Wall clock time and date at job start Mon Mar 30 2020 06:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46923 * 2 1 4 4 C 1.50698 * 109.46673 * 240.00060 * 2 1 3 5 5 H 1.08003 * 119.99836 * 239.99830 * 4 2 1 6 6 C 1.37875 * 120.00037 * 60.00282 * 4 2 1 7 7 N 1.31515 * 120.00177 * 359.72511 * 6 4 2 8 8 Si 1.86801 * 119.99854 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47349 * 59.99884 * 8 6 4 10 10 H 1.48497 * 109.46993 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47213 * 299.99956 * 8 6 4 12 12 N 1.46502 * 109.47107 * 120.00269 * 2 1 3 13 13 C 1.46497 * 120.00086 * 55.32209 * 12 2 1 14 14 C 1.39666 * 119.99984 * 235.32684 * 12 2 1 15 15 C 1.38944 * 120.06774 * 5.50655 * 14 12 2 16 16 C 1.38089 * 119.94881 * 179.74511 * 15 14 12 17 17 C 1.38292 * 120.09099 * 0.53257 * 16 15 14 18 18 C 1.50697 * 119.93349 * 179.70182 * 17 16 15 19 19 N 1.46899 * 109.46810 * 260.02146 * 18 17 16 20 20 C 1.38386 * 120.13227 * 359.71995 * 17 16 15 21 21 Cl 1.73595 * 119.97403 * 180.02562 * 20 17 16 22 22 C 1.38240 * 120.04731 * 0.02562 * 20 17 16 23 23 H 1.09001 * 109.46844 * 300.00081 * 1 2 3 24 24 H 1.09000 * 109.47225 * 59.99467 * 1 2 3 25 25 H 1.08994 * 109.47320 * 180.02562 * 1 2 3 26 26 H 0.96993 * 119.99916 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.46986 * 90.00276 * 13 12 2 28 28 H 1.08999 * 109.47327 * 209.99903 * 13 12 2 29 29 H 1.09001 * 109.47361 * 330.00432 * 13 12 2 30 30 H 1.08003 * 120.02390 * 0.02562 * 15 14 12 31 31 H 1.08003 * 119.95755 * 180.22979 * 16 15 14 32 32 H 1.09003 * 109.47351 * 20.02060 * 18 17 16 33 33 H 1.09002 * 109.46927 * 140.02032 * 18 17 16 34 34 H 1.00893 * 111.00557 * 56.04769 * 19 18 17 35 35 H 1.00903 * 110.99773 * 180.02562 * 19 18 17 36 36 H 1.07999 * 120.04088 * 179.97438 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9387 0.8269 -2.6034 8 14 2.3223 -1.1195 -4.0079 9 1 1.8278 -2.5198 -4.0082 10 1 1.8277 -0.4191 -5.2204 11 1 3.8074 -1.1190 -4.0078 12 7 2.0184 -0.6907 1.1962 13 6 1.5820 -2.0598 1.4809 14 6 2.8999 -0.0438 2.0651 15 6 3.2253 1.2914 1.8599 16 6 4.0930 1.9301 2.7236 17 6 4.6471 1.2396 3.7861 18 6 5.5989 1.9382 4.7225 19 7 6.9808 1.5911 4.3649 20 6 4.3296 -0.0917 3.9907 21 17 5.0270 -0.9543 5.3260 22 6 3.4575 -0.7352 3.1326 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 0.7041 1.1580 -3.4843 27 1 2.2706 -2.7649 1.0152 28 1 1.5710 -2.2210 2.5588 29 1 0.5798 -2.2125 1.0804 30 1 2.7963 1.8305 1.0282 31 1 4.3431 2.9689 2.5664 32 1 5.4626 3.0167 4.6413 33 1 5.3983 1.6227 5.7464 34 1 7.1717 1.8148 3.3998 35 1 7.6387 2.0472 4.9791 36 1 3.2101 -1.7742 3.2922 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723163136.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:11 Heat of formation + Delta-G solvation = 8.946276 kcal Electronic energy + Delta-G solvation = -18269.161939 eV Core-core repulsion = 15392.296358 eV Total energy + Delta-G solvation = -2876.865581 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.67867 -38.28841 -37.05428 -35.59065 -34.45890 -32.08652 -31.24849 -30.07587 -27.50212 -27.15021 -24.99152 -23.42294 -22.52190 -20.90276 -18.58073 -18.27717 -17.21157 -16.77944 -16.47321 -15.86203 -15.55734 -15.29314 -15.21609 -14.80146 -14.41918 -14.30722 -13.90603 -13.44543 -13.37670 -12.98089 -12.97412 -12.71214 -12.54891 -12.44220 -12.38022 -12.21219 -12.06515 -11.69008 -11.52919 -11.15686 -10.50327 -10.39550 -9.61859 -9.46041 -8.26568 -7.88444 -6.29390 0.41012 0.64655 1.31056 1.40994 1.41945 1.49397 2.35904 2.60474 2.86202 3.12380 3.87757 3.98348 4.07598 4.26302 4.37357 4.45660 4.57771 4.68193 4.76953 4.80535 4.88527 4.90767 4.95181 5.02866 5.09960 5.29514 5.41093 5.49592 5.60650 5.68205 5.87128 5.93297 6.19164 6.33433 6.48582 6.74024 6.85614 6.89549 7.41709 8.87785 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.025814 B = 0.004930 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.418838 B = 5678.133659 C = 5946.012435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.269 3.731 3 H 0.032 0.968 4 C -0.539 4.539 5 H 0.047 0.953 6 C 0.023 3.977 7 N -0.912 5.912 8 Si 0.954 3.046 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.278 1.278 12 N -0.616 5.616 13 C 0.099 3.901 14 C 0.229 3.771 15 C -0.217 4.217 16 C -0.048 4.048 17 C -0.162 4.162 18 C 0.119 3.881 19 N -0.850 5.850 20 C 0.034 3.966 21 Cl -0.064 7.064 22 C -0.217 4.217 23 H 0.025 0.975 24 H 0.070 0.930 25 H 0.036 0.964 26 H 0.265 0.735 27 H 0.037 0.963 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.114 0.886 31 H 0.146 0.854 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.343 0.657 35 H 0.351 0.649 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.382 1.151 12.939 14.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.168 3.832 3 H 0.049 0.951 4 C -0.577 4.577 5 H 0.066 0.934 6 C -0.177 4.177 7 N -0.551 5.551 8 Si 0.780 3.220 9 H -0.197 1.197 10 H -0.206 1.206 11 H -0.203 1.203 12 N -0.322 5.322 13 C -0.044 4.044 14 C 0.122 3.878 15 C -0.239 4.239 16 C -0.068 4.068 17 C -0.166 4.166 18 C -0.011 4.011 19 N -0.381 5.381 20 C 0.006 3.994 21 Cl -0.035 7.035 22 C -0.241 4.241 23 H 0.044 0.956 24 H 0.089 0.911 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.056 0.944 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.132 0.868 31 H 0.163 0.837 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.155 0.845 35 H 0.165 0.835 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.982 0.326 12.953 14.271 hybrid contribution 0.159 0.434 -1.348 1.425 sum 6.141 0.759 11.605 13.152 Atomic orbital electron populations 1.21947 0.97817 0.99712 1.00185 1.18651 0.91219 0.92399 0.80965 0.95054 1.21594 1.31596 1.12928 0.91616 0.93435 1.25554 0.95068 0.95640 1.01394 1.69951 1.36886 1.23822 1.24463 0.85676 0.78496 0.78870 0.78972 1.19720 1.20605 1.20349 1.47106 1.46748 1.14554 1.23802 1.21526 0.99829 0.82473 1.00559 1.18027 0.89007 0.91717 0.89075 1.20962 1.05456 0.94108 1.03411 1.20878 0.93974 0.99874 0.92046 1.19490 1.03965 0.92775 1.00321 1.20450 0.87124 0.96430 0.97094 1.58614 1.02993 1.67720 1.08781 1.20455 0.95958 0.92347 0.90667 1.98319 1.83425 1.76650 1.45110 1.20476 1.04482 1.00990 0.98152 0.95625 0.91101 0.94458 0.92565 0.94412 0.90574 0.91496 0.86824 0.83681 0.93460 0.90438 0.84458 0.83465 0.84939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.39 8.85 71.98 0.64 -5.75 16 2 C 0.27 13.08 2.58 44.25 0.11 13.19 16 3 H 0.03 1.66 5.31 -2.39 -0.01 1.65 16 4 C -0.54 -28.62 8.44 25.60 0.22 -28.40 16 5 H 0.05 2.57 7.79 -2.91 -0.02 2.55 16 6 C 0.02 1.24 5.31 84.65 0.45 1.69 16 7 N -0.91 -49.87 11.31 21.45 0.24 -49.63 16 8 Si 0.95 42.50 29.54 68.60 2.03 44.52 16 9 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 10 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 N -0.62 -25.86 2.89 -702.29 -2.03 -27.88 16 13 C 0.10 3.52 9.51 127.77 1.22 4.74 16 14 C 0.23 8.93 6.54 38.21 0.25 9.18 16 15 C -0.22 -8.15 9.31 22.40 0.21 -7.94 16 16 C -0.05 -1.46 9.66 22.25 0.21 -1.25 16 17 C -0.16 -4.61 5.40 -19.82 -0.11 -4.72 16 18 C 0.12 2.60 6.32 85.56 0.54 3.14 16 19 N -0.85 -17.04 9.61 -190.01 -1.83 -18.87 16 20 C 0.03 1.04 6.31 22.31 0.14 1.18 16 21 Cl -0.06 -1.74 27.50 -2.72 -0.07 -1.81 16 22 C -0.22 -7.44 8.94 22.42 0.20 -7.24 16 23 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.07 3.62 6.06 -2.39 -0.01 3.61 16 25 H 0.04 1.63 6.52 -2.39 -0.02 1.62 16 26 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 27 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.08 2.27 6.46 -2.39 -0.02 2.25 16 29 H 0.07 2.37 6.19 -2.39 -0.01 2.35 16 30 H 0.11 4.71 5.74 -2.91 -0.02 4.69 16 31 H 0.15 3.52 8.03 -2.91 -0.02 3.50 16 32 H 0.05 0.87 8.00 -2.39 -0.02 0.85 16 33 H 0.08 1.69 7.35 -2.39 -0.02 1.67 16 34 H 0.34 6.79 8.98 -89.70 -0.81 5.98 16 35 H 0.35 5.22 9.08 -89.69 -0.81 4.40 16 36 H 0.13 4.23 6.31 -2.91 -0.02 4.21 16 Total: -1.00 -57.24 305.75 1.92 -55.32 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -0.50 Total: 20.53 kcal Atomic # 6 Polarization: -26.26 SS G_CDS: 4.08 Total: -22.18 kcal Atomic # 7 Polarization: -92.77 SS G_CDS: -3.61 Total: -96.38 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -0.07 Total: -1.81 kcal Total: -57.24 1.92 -55.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723163136.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.268 kcal (2) G-P(sol) polarization free energy of solvation -57.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds