Wall clock time and date at job start Mon Mar 30 2020 06:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46904 * 111.00299 * 2 1 4 4 C 1.50694 * 109.47248 * 179.97438 * 3 2 1 5 5 C 1.38290 * 119.92348 * 270.01853 * 4 3 2 6 6 C 1.38118 * 120.09803 * 179.70053 * 5 4 3 7 7 C 1.38887 * 119.93354 * 0.57647 * 6 5 4 8 8 N 1.39743 * 120.07587 * 179.69824 * 7 6 5 9 9 C 1.46901 * 111.00305 * 295.77365 * 8 7 6 10 10 C 1.46906 * 111.00121 * 59.72794 * 8 7 6 11 11 C 1.50696 * 109.47351 * 169.99853 * 10 8 7 12 12 H 1.08007 * 119.99780 * 0.02562 * 11 10 8 13 13 C 1.37878 * 120.00506 * 180.02562 * 11 10 8 14 14 N 1.31515 * 119.99253 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00341 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47238 * 59.99702 * 15 13 11 17 17 H 1.48503 * 109.47230 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47102 * 299.99648 * 15 13 11 19 19 C 1.38986 * 119.84110 * 359.42616 * 7 6 5 20 20 Cl 1.73605 * 120.04493 * 180.29689 * 19 7 6 21 21 C 1.38204 * 119.91105 * 0.27607 * 19 7 6 22 22 H 1.09003 * 109.47184 * 299.99886 * 1 2 3 23 23 H 1.08999 * 109.47025 * 59.99975 * 1 2 3 24 24 H 1.09003 * 109.47134 * 180.02562 * 1 2 3 25 25 H 1.00904 * 111.00027 * 123.95423 * 2 1 3 26 26 H 1.08997 * 109.46686 * 59.99645 * 3 2 1 27 27 H 1.09004 * 109.46682 * 299.99912 * 3 2 1 28 28 H 1.08007 * 119.95235 * 0.02562 * 5 4 3 29 29 H 1.08001 * 120.03593 * 180.30125 * 6 5 4 30 30 H 1.09002 * 109.47401 * 183.95424 * 9 8 7 31 31 H 1.09001 * 109.46874 * 63.95437 * 9 8 7 32 32 H 1.09004 * 109.46970 * 303.95570 * 9 8 7 33 33 H 1.08997 * 109.46995 * 289.99833 * 10 8 7 34 34 H 1.09001 * 109.46848 * 49.99839 * 10 8 7 35 35 H 0.96999 * 119.99606 * 179.97438 * 14 13 11 36 36 H 1.08004 * 119.97433 * 180.02562 * 21 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5019 1.3312 0.0006 5 6 4.1910 1.3126 1.1995 6 6 5.5715 1.2694 1.2043 7 6 6.2686 1.2568 0.0031 8 7 7.6656 1.2196 0.0045 9 6 8.2241 2.4371 0.6075 10 6 8.1595 0.0181 0.6905 11 6 9.6429 -0.1167 0.4621 12 1 10.1666 0.6171 -0.1328 13 6 10.3318 -1.1767 1.0125 14 7 9.6942 -2.0698 1.7374 15 14 12.1707 -1.3434 0.7300 16 1 12.8648 -0.1461 1.2684 17 1 12.6700 -2.5580 1.4233 18 1 12.4394 -1.4583 -0.7260 19 6 5.5734 1.2756 -1.2002 20 17 6.4393 1.2522 -2.7047 21 6 4.1919 1.3126 -1.1975 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8306 -0.5261 0.7814 26 1 1.6459 1.8947 0.8899 27 1 1.6460 1.8947 -0.8900 28 1 3.6487 1.3265 2.1334 29 1 6.1085 1.2500 2.1411 30 1 9.3113 2.4139 0.5326 31 1 7.9333 2.4892 1.6567 32 1 7.8422 3.3116 0.0807 33 1 7.9627 0.1032 1.7592 34 1 7.6498 -0.8609 0.2960 35 1 10.1787 -2.8158 2.1243 36 1 3.6506 1.3268 -2.1320 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723163743.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:34 Heat of formation + Delta-G solvation = 25.830739 kcal Electronic energy + Delta-G solvation = -17934.514351 eV Core-core repulsion = 15058.380935 eV Total energy + Delta-G solvation = -2876.133416 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.60426 -36.98648 -35.92194 -35.14605 -32.59249 -30.46664 -30.37082 -27.35010 -26.64700 -24.70475 -23.38159 -22.66237 -21.61752 -20.05184 -16.94973 -16.28350 -16.05668 -15.36384 -14.99471 -14.77433 -14.66670 -14.09069 -13.77092 -13.51730 -13.27887 -12.86870 -12.51438 -12.28746 -12.00978 -11.94016 -11.54638 -11.27560 -11.13396 -10.96984 -10.91481 -10.73011 -10.53934 -10.21937 -9.98109 -9.30902 -8.67226 -8.51663 -8.45507 -8.08543 -7.47441 -6.03855 -4.05427 1.44835 1.53644 2.72291 3.34011 3.37980 3.41268 3.77202 4.31837 4.40680 4.71320 4.83769 4.96904 5.16239 5.24308 5.29520 5.31957 5.37339 5.47585 5.65810 5.70760 5.86703 6.06447 6.13781 6.19197 6.35540 6.60756 6.65666 6.72802 6.76248 6.97897 7.17270 7.23723 7.30216 7.80455 8.01537 8.11969 8.54188 9.00729 9.58438 11.07012 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.024180 B = 0.004761 C = 0.004423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.725072 B = 5879.238786 C = 6329.446609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.691 5.691 3 C 0.105 3.895 4 C -0.097 4.097 5 C -0.104 4.104 6 C -0.139 4.139 7 C 0.127 3.873 8 N -0.507 5.507 9 C 0.045 3.955 10 C 0.202 3.798 11 C -0.508 4.508 12 H 0.065 0.935 13 C 0.057 3.943 14 N -0.898 5.898 15 Si 0.899 3.101 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.275 1.275 19 C -0.020 4.020 20 Cl -0.058 7.058 21 C -0.089 4.089 22 H 0.020 0.980 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.345 0.655 26 H 0.038 0.962 27 H 0.079 0.921 28 H 0.118 0.882 29 H 0.128 0.872 30 H 0.081 0.919 31 H 0.017 0.983 32 H 0.047 0.953 33 H -0.004 1.004 34 H 0.031 0.969 35 H 0.262 0.738 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.301 7.699 -2.067 17.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.322 5.322 3 C -0.024 4.024 4 C -0.098 4.098 5 C -0.123 4.123 6 C -0.159 4.159 7 C 0.031 3.969 8 N -0.229 5.229 9 C -0.101 4.101 10 C 0.079 3.921 11 C -0.547 4.547 12 H 0.083 0.917 13 C -0.144 4.144 14 N -0.537 5.537 15 Si 0.727 3.273 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.201 1.201 19 C -0.048 4.048 20 Cl -0.029 7.029 21 C -0.109 4.109 22 H 0.038 0.962 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.163 0.837 26 H 0.056 0.944 27 H 0.098 0.902 28 H 0.136 0.864 29 H 0.146 0.854 30 H 0.099 0.901 31 H 0.036 0.964 32 H 0.066 0.934 33 H 0.014 0.986 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.962 7.430 -3.268 17.022 hybrid contribution 0.633 -0.026 1.604 1.725 sum -14.329 7.403 -1.664 16.214 Atomic orbital electron populations 1.22204 0.87815 1.01945 1.00244 1.60421 1.07392 1.13775 1.50610 1.20821 0.90559 0.89890 1.01081 1.19488 0.94582 1.03049 0.92653 1.20907 0.94026 1.00253 0.97147 1.21740 0.94424 1.01076 0.98689 1.18980 0.91636 0.95663 0.90647 1.59909 1.00741 1.05097 1.57134 1.22225 1.01660 0.90664 0.95590 1.19800 0.95907 0.85229 0.91201 1.21079 0.92274 1.09692 1.31639 0.91692 1.24968 0.98692 0.95615 0.95172 1.69951 1.36167 1.13417 1.34190 0.86539 0.84935 0.77332 0.78487 1.20261 1.21358 1.20089 1.20948 0.91558 1.05087 0.87202 1.98345 1.77464 1.96693 1.30386 1.20740 0.91470 1.00333 0.98314 0.96170 0.91723 0.91349 0.83654 0.94410 0.90238 0.86421 0.85408 0.90057 0.96404 0.93442 0.98608 0.95053 0.92823 0.85280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.70 60.06 0.64 0.87 16 2 N -0.69 -7.35 6.84 -122.42 -0.84 -8.18 16 3 C 0.10 1.11 5.81 -4.98 -0.03 1.08 16 4 C -0.10 -1.30 5.39 -104.59 -0.56 -1.86 16 5 C -0.10 -1.46 9.69 -39.61 -0.38 -1.85 16 6 C -0.14 -2.39 8.71 -39.39 -0.34 -2.73 16 7 C 0.13 2.45 4.67 -83.73 -0.39 2.06 16 8 N -0.51 -11.12 4.12 -180.28 -0.74 -11.86 16 9 C 0.05 0.88 9.09 60.07 0.55 1.43 16 10 C 0.20 5.26 4.30 -4.97 -0.02 5.23 16 11 C -0.51 -14.22 8.52 -34.44 -0.29 -14.51 16 12 H 0.06 1.79 7.10 -52.48 -0.37 1.42 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 15 Si 0.90 21.66 29.54 -169.99 -5.02 16.63 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 C -0.02 -0.36 6.34 -39.32 -0.25 -0.61 16 20 Cl -0.06 -1.04 28.44 -51.86 -1.47 -2.51 16 21 C -0.09 -1.32 9.48 -39.58 -0.38 -1.70 16 22 H 0.02 0.15 8.14 -51.93 -0.42 -0.28 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.35 3.61 8.81 -39.29 -0.35 3.26 16 26 H 0.04 0.36 8.08 -51.93 -0.42 -0.06 16 27 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 28 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 29 H 0.13 2.23 7.17 -52.49 -0.38 1.86 16 30 H 0.08 1.65 6.86 -51.93 -0.36 1.30 16 31 H 0.02 0.33 7.49 -51.93 -0.39 -0.06 16 32 H 0.05 0.81 8.13 -51.93 -0.42 0.39 16 33 H 0.00 -0.10 7.46 -51.93 -0.39 -0.49 16 34 H 0.03 0.90 8.06 -51.93 -0.42 0.48 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.13 1.70 8.06 -52.48 -0.42 1.27 16 LS Contribution 317.78 15.07 4.79 4.79 Total: -1.00 -30.00 317.78 -9.27 -39.27 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -5.16 Total: -1.19 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -1.56 Total: -11.07 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: -0.84 Total: -45.92 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.47 Total: -2.51 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.00 -9.27 -39.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723163743.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.098 kcal (2) G-P(sol) polarization free energy of solvation -30.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds