Wall clock time and date at job start Mon Mar 30 2020 06:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46904 * 111.00299 * 2 1 4 4 C 1.50694 * 109.47248 * 179.97438 * 3 2 1 5 5 C 1.38290 * 119.92348 * 270.01853 * 4 3 2 6 6 C 1.38118 * 120.09803 * 179.70053 * 5 4 3 7 7 C 1.38887 * 119.93354 * 0.57647 * 6 5 4 8 8 N 1.39743 * 120.07587 * 179.69824 * 7 6 5 9 9 C 1.46901 * 111.00305 * 295.77365 * 8 7 6 10 10 C 1.46906 * 111.00121 * 59.72794 * 8 7 6 11 11 C 1.50696 * 109.47351 * 169.99853 * 10 8 7 12 12 H 1.08007 * 119.99780 * 0.02562 * 11 10 8 13 13 C 1.37878 * 120.00506 * 180.02562 * 11 10 8 14 14 N 1.31515 * 119.99253 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00341 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47238 * 59.99702 * 15 13 11 17 17 H 1.48503 * 109.47230 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47102 * 299.99648 * 15 13 11 19 19 C 1.38986 * 119.84110 * 359.42616 * 7 6 5 20 20 Cl 1.73605 * 120.04493 * 180.29689 * 19 7 6 21 21 C 1.38204 * 119.91105 * 0.27607 * 19 7 6 22 22 H 1.09003 * 109.47184 * 299.99886 * 1 2 3 23 23 H 1.08999 * 109.47025 * 59.99975 * 1 2 3 24 24 H 1.09003 * 109.47134 * 180.02562 * 1 2 3 25 25 H 1.00904 * 111.00027 * 123.95423 * 2 1 3 26 26 H 1.08997 * 109.46686 * 59.99645 * 3 2 1 27 27 H 1.09004 * 109.46682 * 299.99912 * 3 2 1 28 28 H 1.08007 * 119.95235 * 0.02562 * 5 4 3 29 29 H 1.08001 * 120.03593 * 180.30125 * 6 5 4 30 30 H 1.09002 * 109.47401 * 183.95424 * 9 8 7 31 31 H 1.09001 * 109.46874 * 63.95437 * 9 8 7 32 32 H 1.09004 * 109.46970 * 303.95570 * 9 8 7 33 33 H 1.08997 * 109.46995 * 289.99833 * 10 8 7 34 34 H 1.09001 * 109.46848 * 49.99839 * 10 8 7 35 35 H 0.96999 * 119.99606 * 179.97438 * 14 13 11 36 36 H 1.08004 * 119.97433 * 180.02562 * 21 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5019 1.3312 0.0006 5 6 4.1910 1.3126 1.1995 6 6 5.5715 1.2694 1.2043 7 6 6.2686 1.2568 0.0031 8 7 7.6656 1.2196 0.0045 9 6 8.2241 2.4371 0.6075 10 6 8.1595 0.0181 0.6905 11 6 9.6429 -0.1167 0.4621 12 1 10.1666 0.6171 -0.1328 13 6 10.3318 -1.1767 1.0125 14 7 9.6942 -2.0698 1.7374 15 14 12.1707 -1.3434 0.7300 16 1 12.8648 -0.1461 1.2684 17 1 12.6700 -2.5580 1.4233 18 1 12.4394 -1.4583 -0.7260 19 6 5.5734 1.2756 -1.2002 20 17 6.4393 1.2522 -2.7047 21 6 4.1919 1.3126 -1.1975 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8306 -0.5261 0.7814 26 1 1.6459 1.8947 0.8899 27 1 1.6460 1.8947 -0.8900 28 1 3.6487 1.3265 2.1334 29 1 6.1085 1.2500 2.1411 30 1 9.3113 2.4139 0.5326 31 1 7.9333 2.4892 1.6567 32 1 7.8422 3.3116 0.0807 33 1 7.9627 0.1032 1.7592 34 1 7.6498 -0.8609 0.2960 35 1 10.1787 -2.8158 2.1243 36 1 3.6506 1.3268 -2.1320 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723163743.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:33 Heat of formation + Delta-G solvation = 6.535989 kcal Electronic energy + Delta-G solvation = -17935.351034 eV Core-core repulsion = 15058.380935 eV Total energy + Delta-G solvation = -2876.970099 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.93115 -38.27729 -37.30510 -36.26391 -34.66308 -31.72461 -31.62139 -29.29301 -27.83378 -26.17155 -24.60860 -23.90266 -23.08954 -21.47184 -18.68625 -17.81386 -17.30016 -16.78837 -16.57288 -16.11354 -15.67324 -15.37248 -15.17460 -14.88577 -14.52309 -14.35126 -13.97284 -13.82443 -13.20585 -13.06250 -12.87093 -12.73210 -12.65557 -12.43056 -12.42058 -12.26982 -12.20020 -11.98047 -11.60999 -11.34268 -10.62274 -9.79821 -9.54146 -9.28161 -9.21328 -8.20899 -6.31093 0.17279 0.27479 1.37196 1.41425 1.44792 1.52510 2.39892 2.56461 3.11213 3.17003 3.49673 3.81332 3.89526 4.14669 4.26481 4.37076 4.47268 4.56114 4.59406 4.64772 4.71620 4.77910 4.90413 5.00571 5.07156 5.08938 5.15556 5.21717 5.42811 5.48033 5.65626 5.79606 6.04174 6.06614 6.17305 6.40820 6.73196 6.82698 7.38163 8.90078 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.024180 B = 0.004761 C = 0.004423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.725072 B = 5879.238786 C = 6329.446609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.708 5.708 3 C 0.109 3.891 4 C -0.081 4.081 5 C -0.094 4.094 6 C -0.150 4.150 7 C 0.089 3.911 8 N -0.513 5.513 9 C 0.050 3.950 10 C 0.224 3.776 11 C -0.525 4.525 12 H 0.065 0.935 13 C 0.005 3.995 14 N -0.933 5.933 15 Si 0.969 3.031 16 H -0.265 1.265 17 H -0.282 1.282 18 H -0.271 1.271 19 C -0.034 4.034 20 Cl -0.067 7.067 21 C -0.086 4.086 22 H 0.031 0.969 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.345 0.655 26 H 0.057 0.943 27 H 0.091 0.909 28 H 0.150 0.850 29 H 0.116 0.884 30 H 0.067 0.933 31 H 0.021 0.979 32 H 0.070 0.930 33 H -0.026 1.026 34 H -0.006 1.006 35 H 0.265 0.735 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.680 8.515 -2.204 18.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.339 5.339 3 C -0.019 4.019 4 C -0.082 4.082 5 C -0.113 4.113 6 C -0.171 4.171 7 C -0.007 4.007 8 N -0.234 5.234 9 C -0.097 4.097 10 C 0.100 3.900 11 C -0.563 4.563 12 H 0.083 0.917 13 C -0.193 4.193 14 N -0.573 5.573 15 Si 0.793 3.207 16 H -0.190 1.190 17 H -0.208 1.208 18 H -0.196 1.196 19 C -0.062 4.062 20 Cl -0.039 7.039 21 C -0.106 4.106 22 H 0.050 0.950 23 H 0.088 0.912 24 H 0.091 0.909 25 H 0.162 0.838 26 H 0.076 0.924 27 H 0.110 0.890 28 H 0.167 0.833 29 H 0.134 0.866 30 H 0.086 0.914 31 H 0.039 0.961 32 H 0.089 0.911 33 H -0.009 1.009 34 H 0.012 0.988 35 H 0.074 0.926 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -16.363 8.271 -3.412 18.649 hybrid contribution 0.896 -0.258 1.652 1.897 sum -15.467 8.013 -1.760 17.508 Atomic orbital electron populations 1.22240 0.86207 1.02591 1.01017 1.60419 1.08982 1.13658 1.50887 1.20851 0.87999 0.90396 1.02697 1.19868 0.96426 1.00244 0.91647 1.21204 0.92686 0.98428 0.98963 1.21715 0.95927 1.02014 0.97424 1.19089 0.90399 0.99008 0.92182 1.59706 1.02933 1.04233 1.56552 1.22202 1.00780 0.90614 0.96108 1.19320 0.94906 0.85973 0.89836 1.21401 0.93394 1.09893 1.31631 0.91729 1.25874 1.03642 0.95111 0.94676 1.70081 1.38142 1.14006 1.35093 0.85446 0.78980 0.77754 0.78508 1.18971 1.20780 1.19603 1.21102 0.92602 1.06126 0.86333 1.98332 1.77948 1.96819 1.30754 1.21019 0.90284 0.99330 0.99926 0.95033 0.91213 0.90876 0.83751 0.92444 0.89022 0.83264 0.86554 0.91408 0.96081 0.91080 1.00872 0.98835 0.92643 0.83304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.70 127.69 1.37 1.74 16 2 N -0.71 -12.93 6.84 -541.24 -3.70 -16.64 16 3 C 0.11 1.90 5.81 85.55 0.50 2.39 16 4 C -0.08 -1.96 5.39 -19.84 -0.11 -2.07 16 5 C -0.09 -2.45 9.69 22.25 0.22 -2.24 16 6 C -0.15 -5.19 8.71 22.40 0.19 -5.00 16 7 C 0.09 3.48 4.67 38.21 0.18 3.66 16 8 N -0.51 -23.17 4.12 -724.29 -2.98 -26.16 16 9 C 0.05 1.96 9.09 127.69 1.16 3.12 16 10 C 0.22 12.22 4.30 85.55 0.37 12.59 16 11 C -0.53 -30.15 8.52 25.60 0.22 -29.93 16 12 H 0.06 3.63 7.10 -2.91 -0.02 3.61 16 13 C 0.01 0.30 5.46 84.65 0.46 0.76 16 14 N -0.93 -56.57 13.29 21.45 0.28 -56.29 16 15 Si 0.97 44.70 29.54 68.60 2.03 46.73 16 16 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 17 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 18 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 19 C -0.03 -1.20 6.34 22.44 0.14 -1.06 16 20 Cl -0.07 -2.42 28.44 -2.72 -0.08 -2.49 16 21 C -0.09 -2.41 9.48 22.27 0.21 -2.20 16 22 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 23 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.34 6.30 8.81 -89.69 -0.79 5.51 16 26 H 0.06 0.82 8.08 -2.39 -0.02 0.80 16 27 H 0.09 1.42 8.08 -2.39 -0.02 1.41 16 28 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 29 H 0.12 4.20 7.17 -2.91 -0.02 4.18 16 30 H 0.07 2.81 6.86 -2.39 -0.02 2.80 16 31 H 0.02 0.80 7.49 -2.39 -0.02 0.78 16 32 H 0.07 2.43 8.13 -2.38 -0.02 2.41 16 33 H -0.03 -1.52 7.46 -2.39 -0.02 -1.54 16 34 H -0.01 -0.40 8.06 -2.39 -0.02 -0.42 16 35 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 36 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -65.88 317.78 0.74 -65.15 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 0.28 Total: 7.93 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: 4.91 Total: -18.22 kcal Atomic # 7 Polarization: -92.68 SS G_CDS: -6.40 Total: -99.09 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 17 Polarization: -2.42 SS G_CDS: -0.08 Total: -2.49 kcal Total: -65.88 0.74 -65.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723163743.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.681 kcal (2) G-P(sol) polarization free energy of solvation -65.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds