Wall clock time and date at job start Mon Mar 30 2020 06:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47250 * 2 1 4 4 C 1.50701 * 109.46923 * 239.99670 * 2 1 3 5 5 H 1.08002 * 119.99942 * 240.00150 * 4 2 1 6 6 C 1.37876 * 119.99807 * 60.00164 * 4 2 1 7 7 N 1.31512 * 120.00342 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00026 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.46786 * 60.00122 * 8 6 4 10 10 H 1.48497 * 109.47382 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47338 * 300.00406 * 8 6 4 12 12 N 1.46902 * 109.46964 * 119.99823 * 2 1 3 13 13 C 1.46893 * 111.00193 * 299.43381 * 12 2 1 14 14 C 1.39751 * 110.99937 * 175.47495 * 12 2 1 15 15 C 1.38883 * 120.07319 * 59.75881 * 14 12 2 16 16 C 1.38117 * 119.93799 * 179.72424 * 15 14 12 17 17 C 1.38299 * 120.09341 * 0.28044 * 16 15 14 18 18 C 1.50694 * 119.92136 * 180.02562 * 17 16 15 19 19 N 1.46892 * 109.47493 * 89.99482 * 18 17 16 20 20 C 1.38269 * 120.15238 * 0.02562 * 17 16 15 21 21 C 1.38214 * 120.06552 * 359.97438 * 20 17 16 22 22 Cl 1.73602 * 120.04554 * 180.02562 * 21 20 17 23 23 H 1.08998 * 109.46697 * 185.97333 * 1 2 3 24 24 H 1.08998 * 109.46853 * 305.97489 * 1 2 3 25 25 H 1.08999 * 109.46779 * 65.97156 * 1 2 3 26 26 H 0.97000 * 120.00541 * 180.02562 * 7 6 4 27 27 H 1.09004 * 109.46938 * 296.04293 * 13 12 2 28 28 H 1.08995 * 109.47262 * 56.04589 * 13 12 2 29 29 H 1.08999 * 109.47212 * 176.04938 * 13 12 2 30 30 H 1.08002 * 120.03652 * 359.97438 * 15 14 12 31 31 H 1.07997 * 119.95636 * 180.29768 * 16 15 14 32 32 H 1.09000 * 109.46907 * 209.99889 * 18 17 16 33 33 H 1.09010 * 109.47157 * 329.99243 * 18 17 16 34 34 H 1.00901 * 111.00039 * 56.04511 * 19 18 17 35 35 H 1.00900 * 111.00330 * 179.97438 * 19 18 17 36 36 H 1.08002 * 119.96725 * 179.97438 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3224 -1.1197 -4.0079 9 1 1.8278 -2.5200 -4.0080 10 1 1.8278 -0.4194 -5.2204 11 1 3.8073 -1.1192 -4.0077 12 7 2.0197 -0.6925 1.1995 13 6 1.5598 -0.0186 2.4210 14 6 3.4129 -0.8009 1.1815 15 6 4.1994 0.3427 1.1340 16 6 5.5761 0.2324 1.1221 17 6 6.1721 -1.0152 1.1515 18 6 7.6746 -1.1310 1.1390 19 7 8.1775 -1.1288 2.5192 20 6 5.3927 -2.1565 1.1925 21 6 4.0144 -2.0536 1.2046 22 17 3.0362 -3.4869 1.2566 23 1 -0.3633 -1.0221 0.1069 24 1 -0.3633 0.6037 0.8317 25 1 -0.3633 0.4185 -0.9386 26 1 0.7081 1.1607 -3.4844 27 1 1.9889 0.9824 2.4673 28 1 0.4722 0.0525 2.4093 29 1 1.8771 -0.5905 3.2929 30 1 3.7351 1.3175 1.1105 31 1 6.1881 1.1217 1.0900 32 1 7.9632 -2.0606 0.6485 33 1 8.0996 -0.2866 0.5961 34 1 7.7487 -1.8639 3.0614 35 1 9.1833 -1.2060 2.5377 36 1 5.8612 -3.1293 1.2150 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723172112.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:24 Heat of formation + Delta-G solvation = 8.524949 kcal Electronic energy + Delta-G solvation = -18727.319417 eV Core-core repulsion = 15850.435566 eV Total energy + Delta-G solvation = -2876.883851 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.91890 -38.35786 -37.19447 -35.42797 -34.53417 -31.63239 -31.50014 -30.03505 -27.74699 -26.32499 -24.84148 -23.75013 -22.34703 -21.05467 -18.53697 -17.85424 -17.22760 -16.83813 -16.45792 -15.98254 -15.70610 -15.34072 -15.00218 -14.78757 -14.69259 -14.03840 -13.78995 -13.59228 -13.34597 -12.95455 -12.69159 -12.62636 -12.49181 -12.37537 -12.30779 -12.19747 -12.05530 -11.81452 -11.46904 -10.94073 -10.51585 -9.75845 -9.55823 -9.26018 -9.11423 -8.09805 -6.18707 0.33498 0.37115 1.39475 1.40716 1.45198 1.48070 2.41985 2.69910 3.17921 3.23812 3.81472 3.92255 3.97628 4.26664 4.35793 4.44554 4.52501 4.59030 4.71324 4.81415 4.82455 4.95318 4.99129 5.07973 5.11188 5.19430 5.43245 5.54194 5.59099 5.74189 5.79437 5.88601 6.22840 6.27859 6.47091 6.66086 6.71694 6.95500 7.48762 8.95730 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.016628 B = 0.007532 C = 0.006763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.452254 B = 3716.653276 C = 4139.325850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.227 3.773 3 H -0.026 1.026 4 C -0.504 4.504 5 H 0.053 0.947 6 C 0.017 3.983 7 N -0.918 5.918 8 Si 0.945 3.055 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.274 1.274 12 N -0.512 5.512 13 C 0.032 3.968 14 C 0.127 3.873 15 C -0.149 4.149 16 C -0.089 4.089 17 C -0.090 4.090 18 C 0.112 3.888 19 N -0.851 5.851 20 C -0.106 4.106 21 C -0.034 4.034 22 Cl -0.069 7.069 23 H 0.031 0.969 24 H 0.031 0.969 25 H 0.064 0.936 26 H 0.261 0.739 27 H 0.021 0.979 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.140 0.860 32 H 0.049 0.951 33 H 0.087 0.913 34 H 0.346 0.654 35 H 0.355 0.645 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.501 -4.172 9.141 15.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.122 3.878 3 H -0.009 1.009 4 C -0.543 4.543 5 H 0.072 0.928 6 C -0.181 4.181 7 N -0.558 5.558 8 Si 0.771 3.229 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.200 1.200 12 N -0.234 5.234 13 C -0.115 4.115 14 C 0.032 3.968 15 C -0.169 4.169 16 C -0.109 4.109 17 C -0.091 4.091 18 C -0.018 4.018 19 N -0.383 5.383 20 C -0.125 4.125 21 C -0.061 4.061 22 Cl -0.040 7.040 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.040 0.960 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.130 0.870 31 H 0.157 0.843 32 H 0.067 0.933 33 H 0.105 0.895 34 H 0.158 0.842 35 H 0.170 0.830 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 10.798 -3.924 9.046 14.623 hybrid contribution 0.288 -0.412 -1.285 1.379 sum 11.086 -4.337 7.761 14.211 Atomic orbital electron populations 1.21682 0.97039 0.98880 1.00616 1.19092 0.92571 0.90182 0.85966 1.00866 1.21269 1.30368 1.11913 0.90745 0.92846 1.25521 0.95551 0.95732 1.01333 1.69973 1.37846 1.24072 1.23917 0.85808 0.78749 0.78901 0.79442 1.20024 1.20751 1.19981 1.59826 1.06252 1.53584 1.03721 1.22401 1.01388 0.96121 0.91573 1.18646 0.89917 0.91637 0.96638 1.21606 0.95166 0.98105 1.02050 1.21102 0.93400 0.98281 0.98089 1.19856 0.96480 0.91817 1.00910 1.20593 0.88507 1.01799 0.90915 1.58663 1.11927 1.56050 1.11614 1.21007 0.90378 0.99990 1.01139 1.20995 0.91770 0.86987 1.06372 1.98312 1.72021 1.36914 1.96774 0.94954 0.94968 0.91686 0.93008 0.96029 0.90607 0.91069 0.87042 0.84266 0.93251 0.89512 0.84157 0.83037 0.83482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.06 8.65 71.98 0.62 -5.44 16 2 C 0.23 11.46 1.76 44.17 0.08 11.54 16 3 H -0.03 -1.45 7.27 -2.39 -0.02 -1.47 16 4 C -0.50 -27.82 8.04 25.60 0.21 -27.61 16 5 H 0.05 3.01 6.90 -2.91 -0.02 2.99 16 6 C 0.02 0.95 5.29 84.65 0.45 1.40 16 7 N -0.92 -52.66 11.29 21.45 0.24 -52.42 16 8 Si 0.94 44.55 29.54 68.60 2.03 46.58 16 9 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 12 N -0.51 -22.14 4.01 -700.11 -2.81 -24.95 16 13 C 0.03 1.15 9.11 127.69 1.16 2.31 16 14 C 0.13 5.16 3.45 38.21 0.13 5.29 16 15 C -0.15 -5.66 8.62 22.40 0.19 -5.47 16 16 C -0.09 -2.82 9.69 22.26 0.22 -2.60 16 17 C -0.09 -2.51 5.39 -19.84 -0.11 -2.61 16 18 C 0.11 2.24 6.91 85.56 0.59 2.83 16 19 N -0.85 -14.53 9.61 -190.02 -1.83 -16.36 16 20 C -0.11 -3.19 9.48 22.27 0.21 -2.98 16 21 C -0.03 -1.25 5.94 22.44 0.13 -1.11 16 22 Cl -0.07 -2.52 28.44 -2.72 -0.08 -2.60 16 23 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.03 1.37 6.66 -2.39 -0.02 1.35 16 25 H 0.06 3.52 5.93 -2.39 -0.01 3.50 16 26 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 27 H 0.02 0.75 7.36 -2.38 -0.02 0.74 16 28 H 0.08 2.64 6.25 -2.39 -0.01 2.62 16 29 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.11 4.39 7.06 -2.91 -0.02 4.37 16 31 H 0.14 3.73 8.06 -2.91 -0.02 3.70 16 32 H 0.05 0.86 8.08 -2.39 -0.02 0.84 16 33 H 0.09 1.64 8.08 -2.38 -0.02 1.62 16 34 H 0.35 5.58 8.99 -89.69 -0.81 4.78 16 35 H 0.36 4.26 9.08 -89.69 -0.81 3.44 16 36 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -62.02 308.89 0.93 -61.09 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -0.51 Total: 13.11 kcal Atomic # 6 Polarization: -28.34 SS G_CDS: 3.89 Total: -24.46 kcal Atomic # 7 Polarization: -89.33 SS G_CDS: -4.39 Total: -93.72 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 17 Polarization: -2.52 SS G_CDS: -0.08 Total: -2.60 kcal Total: -62.02 0.93 -61.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723172112.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.612 kcal (2) G-P(sol) polarization free energy of solvation -62.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds