Wall clock time and date at job start Mon Mar 30 2020 06:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47101 * 2 1 4 4 C 1.50699 * 109.47225 * 239.99999 * 2 1 3 5 5 H 1.08000 * 120.00094 * 244.50937 * 4 2 1 6 6 C 1.37879 * 119.99816 * 64.50871 * 4 2 1 7 7 N 1.31520 * 119.99810 * 193.22818 * 6 4 2 8 8 Si 1.86803 * 120.00298 * 13.23272 * 6 4 2 9 9 H 1.48493 * 109.46883 * 88.00768 * 8 6 4 10 10 H 1.48491 * 109.47097 * 208.00887 * 8 6 4 11 11 H 1.48494 * 109.46728 * 328.00870 * 8 6 4 12 12 N 1.46900 * 109.47060 * 120.00077 * 2 1 3 13 13 C 1.46894 * 110.99915 * 55.94816 * 12 2 1 14 14 C 1.39665 * 110.99808 * 291.99234 * 12 2 1 15 15 C 1.38913 * 120.06919 * 69.65061 * 14 12 2 16 16 C 1.38201 * 119.91166 * 180.02562 * 15 14 12 17 17 Cl 1.73599 * 119.97600 * 179.97438 * 16 15 14 18 18 C 1.38424 * 120.04916 * 0.02562 * 16 15 14 19 19 C 1.38247 * 120.13686 * 359.70564 * 18 16 15 20 20 C 1.38130 * 120.08382 * 0.55301 * 19 18 16 21 21 C 1.50706 * 120.01984 * 179.74959 * 20 19 18 22 22 N 1.46906 * 109.46905 * 259.71784 * 21 20 19 23 23 H 1.08995 * 109.46980 * 313.29452 * 1 2 3 24 24 H 1.09003 * 109.46729 * 73.29588 * 1 2 3 25 25 H 1.08997 * 109.46957 * 193.29061 * 1 2 3 26 26 H 0.97000 * 119.99878 * 180.02562 * 7 6 4 27 27 H 1.08999 * 109.47235 * 293.32482 * 13 12 2 28 28 H 1.09002 * 109.47728 * 53.32808 * 13 12 2 29 29 H 1.09004 * 109.47494 * 173.33099 * 13 12 2 30 30 H 1.07995 * 120.04033 * 359.97438 * 15 14 12 31 31 H 1.08004 * 119.93292 * 179.97438 * 18 16 15 32 32 H 1.07998 * 119.95724 * 180.29352 * 19 18 16 33 33 H 1.09000 * 109.46844 * 139.72308 * 21 20 19 34 34 H 1.08997 * 109.47426 * 19.71627 * 21 20 19 35 35 H 1.00896 * 111.00172 * 180.02562 * 22 21 20 36 36 H 1.00901 * 110.99959 * 303.95840 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5919 -1.6290 -1.1330 6 6 1.7777 -0.1876 -2.4806 7 7 1.9794 -0.9209 -3.5536 8 14 1.1461 1.5623 -2.6503 9 1 2.2963 2.4990 -2.7194 10 1 0.3378 1.6786 -3.8905 11 1 0.3024 1.9000 -1.4760 12 7 2.0197 -0.6925 1.1994 13 6 1.4712 -2.0526 1.2828 14 6 1.7261 0.0372 2.3535 15 6 0.4115 0.1561 2.7863 16 6 0.1247 0.8794 3.9284 17 17 -1.5177 1.0295 4.4704 18 6 1.1459 1.4851 4.6400 19 6 2.4555 1.3634 4.2143 20 6 2.7480 0.6463 3.0705 21 6 4.1756 0.5194 2.6046 22 7 4.4217 1.4735 1.5149 23 1 -0.3633 0.7047 0.7479 24 1 -0.3633 0.2954 -0.9843 25 1 -0.3633 -1.0001 0.2362 26 1 1.8006 -0.5529 -4.4331 27 1 0.3947 -2.0009 1.4463 28 1 1.6722 -2.5833 0.3521 29 1 1.9394 -2.5832 2.1119 30 1 -0.3854 -0.3154 2.2304 31 1 0.9195 2.0502 5.5322 32 1 3.2505 1.8332 4.7743 33 1 4.3520 -0.4948 2.2462 34 1 4.8491 0.7339 3.4343 35 1 5.3727 1.4077 1.1845 36 1 3.7665 1.3368 0.7598 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723172201.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:37 Heat of formation + Delta-G solvation = 37.211362 kcal Electronic energy + Delta-G solvation = -19049.523830 eV Core-core repulsion = 16173.883916 eV Total energy + Delta-G solvation = -2875.639915 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.04920 -37.05199 -36.21117 -34.25639 -32.79671 -30.36384 -30.23733 -28.86399 -25.83124 -25.19768 -24.24716 -22.05995 -21.02970 -19.44780 -16.99005 -16.52156 -15.93277 -15.79484 -14.93026 -14.71332 -14.30432 -13.94501 -13.68756 -13.62330 -13.28763 -12.95451 -12.39318 -12.17032 -11.91783 -11.69637 -11.60115 -11.45066 -11.08952 -10.96923 -10.92478 -10.85376 -10.45253 -10.16527 -9.59288 -9.27322 -8.63068 -8.55269 -8.46518 -8.11399 -7.71473 -6.18886 -4.15415 1.33919 1.46285 2.25821 3.23193 3.32226 3.36797 3.75942 4.33698 4.51940 4.95334 5.06666 5.12371 5.17992 5.35563 5.45146 5.70040 5.81239 5.88660 5.99140 6.03292 6.12467 6.18135 6.30670 6.37044 6.39924 6.53724 6.59813 6.73222 6.85324 6.97505 7.08742 7.46221 7.54439 7.74634 7.87346 8.00919 8.52269 8.89297 9.44731 10.93281 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.018884 B = 0.007320 C = 0.006295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.389055 B = 3824.380574 C = 4447.126433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.192 3.808 3 H 0.037 0.963 4 C -0.512 4.512 5 H 0.082 0.918 6 C 0.079 3.921 7 N -0.890 5.890 8 Si 0.858 3.142 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.254 1.254 12 N -0.493 5.493 13 C 0.032 3.968 14 C 0.125 3.875 15 C -0.146 4.146 16 C -0.029 4.029 17 Cl -0.086 7.086 18 C -0.127 4.127 19 C -0.091 4.091 20 C -0.063 4.063 21 C 0.113 3.887 22 N -0.848 5.848 23 H 0.032 0.968 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.265 0.735 27 H 0.025 0.975 28 H 0.089 0.911 29 H 0.050 0.950 30 H 0.138 0.862 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.337 0.663 36 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.819 2.969 14.519 14.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.087 3.913 3 H 0.055 0.945 4 C -0.550 4.550 5 H 0.100 0.900 6 C -0.124 4.124 7 N -0.527 5.527 8 Si 0.685 3.315 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.178 1.178 12 N -0.213 5.213 13 C -0.115 4.115 14 C 0.029 3.971 15 C -0.167 4.167 16 C -0.057 4.057 17 Cl -0.057 7.057 18 C -0.146 4.146 19 C -0.110 4.110 20 C -0.065 4.065 21 C -0.017 4.017 22 N -0.379 5.379 23 H 0.051 0.949 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.044 0.956 28 H 0.108 0.892 29 H 0.069 0.931 30 H 0.156 0.844 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.149 0.851 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.613 3.469 14.811 15.224 hybrid contribution -1.353 0.213 -0.776 1.574 sum -1.966 3.682 14.034 14.642 Atomic orbital electron populations 1.23112 1.00882 0.99901 1.01015 1.19711 0.89607 0.94571 0.87448 0.94526 1.20797 1.35951 1.10594 0.87654 0.90002 1.24834 0.94752 0.97146 0.95706 1.69929 1.48657 1.35860 0.98261 0.87326 0.79689 0.86289 0.78210 1.20209 1.21399 1.17808 1.59991 1.58976 1.02214 1.00090 1.22404 0.96731 0.89492 1.02854 1.18982 0.90182 0.95038 0.92900 1.22031 0.98437 1.00479 0.95743 1.20814 0.84992 1.02688 0.97167 1.98342 1.20586 1.97047 1.89772 1.20908 0.91853 1.01284 1.00565 1.20858 0.95599 0.98202 0.96373 1.19875 0.95574 0.96840 0.94224 1.20445 0.91212 0.95543 0.94497 1.58958 1.08970 1.54782 1.15205 0.94943 0.92230 0.92943 0.92519 0.95629 0.89215 0.93132 0.84392 0.85491 0.85207 0.93122 0.91580 0.85101 0.82931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.00 6.64 37.16 0.25 -3.75 16 2 C 0.19 4.22 1.50 -68.86 -0.10 4.12 16 3 H 0.04 0.85 5.71 -51.93 -0.30 0.56 16 4 C -0.51 -13.23 8.41 -34.44 -0.29 -13.52 16 5 H 0.08 2.31 7.07 -52.49 -0.37 1.94 16 6 C 0.08 2.13 5.30 -17.82 -0.09 2.03 16 7 N -0.89 -25.81 13.96 55.43 0.77 -25.04 16 8 Si 0.86 20.39 25.74 -169.99 -4.38 16.01 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.25 -5.76 5.45 56.52 0.31 -5.46 16 12 N -0.49 -9.43 3.73 -172.69 -0.64 -10.07 16 13 C 0.03 0.58 8.52 60.06 0.51 1.09 16 14 C 0.12 2.17 4.67 -83.79 -0.39 1.78 16 15 C -0.15 -2.43 6.98 -39.35 -0.27 -2.71 16 16 C -0.03 -0.44 6.32 -39.53 -0.25 -0.69 16 17 Cl -0.09 -1.17 28.95 -51.86 -1.50 -2.67 16 18 C -0.13 -1.71 9.83 -39.51 -0.39 -2.09 16 19 C -0.09 -1.23 9.66 -39.62 -0.38 -1.62 16 20 C -0.06 -1.00 5.41 -104.41 -0.56 -1.56 16 21 C 0.11 1.68 6.54 -4.97 -0.03 1.65 16 22 N -0.85 -13.44 9.61 -11.40 -0.11 -13.55 16 23 H 0.03 0.63 5.86 -51.93 -0.30 0.33 16 24 H 0.06 1.33 4.91 -51.93 -0.25 1.07 16 25 H 0.05 1.04 5.59 -51.93 -0.29 0.75 16 26 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 27 H 0.03 0.44 5.10 -51.93 -0.26 0.17 16 28 H 0.09 1.77 6.47 -51.93 -0.34 1.44 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.14 2.35 4.96 -52.49 -0.26 2.09 16 31 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 32 H 0.13 1.43 8.03 -52.49 -0.42 1.01 16 33 H 0.05 0.80 7.80 -51.93 -0.40 0.40 16 34 H 0.07 0.83 8.00 -51.93 -0.42 0.41 16 35 H 0.34 4.66 9.08 -39.29 -0.36 4.30 16 36 H 0.36 6.59 7.24 -39.29 -0.28 6.31 16 LS Contribution 291.75 15.07 4.40 4.40 Total: -1.00 -27.45 291.75 -7.81 -35.26 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -4.34 Total: 10.94 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -2.01 Total: -15.27 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 0.02 Total: -48.66 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.38 Total: 16.01 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -1.50 Total: -2.67 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.45 -7.81 -35.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723172201.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.471 kcal (2) G-P(sol) polarization free energy of solvation -27.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds