Wall clock time and date at job start Mon Mar 30 2020 06:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47101 * 2 1 4 4 C 1.50699 * 109.47225 * 239.99999 * 2 1 3 5 5 H 1.08000 * 120.00094 * 244.50937 * 4 2 1 6 6 C 1.37879 * 119.99816 * 64.50871 * 4 2 1 7 7 N 1.31520 * 119.99810 * 193.22818 * 6 4 2 8 8 Si 1.86803 * 120.00298 * 13.23272 * 6 4 2 9 9 H 1.48493 * 109.46883 * 88.00768 * 8 6 4 10 10 H 1.48491 * 109.47097 * 208.00887 * 8 6 4 11 11 H 1.48494 * 109.46728 * 328.00870 * 8 6 4 12 12 N 1.46900 * 109.47060 * 120.00077 * 2 1 3 13 13 C 1.46894 * 110.99915 * 55.94816 * 12 2 1 14 14 C 1.39665 * 110.99808 * 291.99234 * 12 2 1 15 15 C 1.38913 * 120.06919 * 69.65061 * 14 12 2 16 16 C 1.38201 * 119.91166 * 180.02562 * 15 14 12 17 17 Cl 1.73599 * 119.97600 * 179.97438 * 16 15 14 18 18 C 1.38424 * 120.04916 * 0.02562 * 16 15 14 19 19 C 1.38247 * 120.13686 * 359.70564 * 18 16 15 20 20 C 1.38130 * 120.08382 * 0.55301 * 19 18 16 21 21 C 1.50706 * 120.01984 * 179.74959 * 20 19 18 22 22 N 1.46906 * 109.46905 * 259.71784 * 21 20 19 23 23 H 1.08995 * 109.46980 * 313.29452 * 1 2 3 24 24 H 1.09003 * 109.46729 * 73.29588 * 1 2 3 25 25 H 1.08997 * 109.46957 * 193.29061 * 1 2 3 26 26 H 0.97000 * 119.99878 * 180.02562 * 7 6 4 27 27 H 1.08999 * 109.47235 * 293.32482 * 13 12 2 28 28 H 1.09002 * 109.47728 * 53.32808 * 13 12 2 29 29 H 1.09004 * 109.47494 * 173.33099 * 13 12 2 30 30 H 1.07995 * 120.04033 * 359.97438 * 15 14 12 31 31 H 1.08004 * 119.93292 * 179.97438 * 18 16 15 32 32 H 1.07998 * 119.95724 * 180.29352 * 19 18 16 33 33 H 1.09000 * 109.46844 * 139.72308 * 21 20 19 34 34 H 1.08997 * 109.47426 * 19.71627 * 21 20 19 35 35 H 1.00896 * 111.00172 * 180.02562 * 22 21 20 36 36 H 1.00901 * 110.99959 * 303.95840 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5919 -1.6290 -1.1330 6 6 1.7777 -0.1876 -2.4806 7 7 1.9794 -0.9209 -3.5536 8 14 1.1461 1.5623 -2.6503 9 1 2.2963 2.4990 -2.7194 10 1 0.3378 1.6786 -3.8905 11 1 0.3024 1.9000 -1.4760 12 7 2.0197 -0.6925 1.1994 13 6 1.4712 -2.0526 1.2828 14 6 1.7261 0.0372 2.3535 15 6 0.4115 0.1561 2.7863 16 6 0.1247 0.8794 3.9284 17 17 -1.5177 1.0295 4.4704 18 6 1.1459 1.4851 4.6400 19 6 2.4555 1.3634 4.2143 20 6 2.7480 0.6463 3.0705 21 6 4.1756 0.5194 2.6046 22 7 4.4217 1.4735 1.5149 23 1 -0.3633 0.7047 0.7479 24 1 -0.3633 0.2954 -0.9843 25 1 -0.3633 -1.0001 0.2362 26 1 1.8006 -0.5529 -4.4331 27 1 0.3947 -2.0009 1.4463 28 1 1.6722 -2.5833 0.3521 29 1 1.9394 -2.5832 2.1119 30 1 -0.3854 -0.3154 2.2304 31 1 0.9195 2.0502 5.5322 32 1 3.2505 1.8332 4.7743 33 1 4.3520 -0.4948 2.2462 34 1 4.8491 0.7339 3.4343 35 1 5.3727 1.4077 1.1845 36 1 3.7665 1.3368 0.7598 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723172201.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:37 Heat of formation + Delta-G solvation = 19.012917 kcal Electronic energy + Delta-G solvation = -19050.312974 eV Core-core repulsion = 16173.883916 eV Total energy + Delta-G solvation = -2876.429059 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.34305 -38.39593 -37.39023 -35.42850 -34.73949 -32.02564 -31.42146 -30.22873 -27.43921 -26.90544 -25.49265 -23.41422 -22.36265 -20.92517 -18.77816 -17.92547 -17.34108 -17.10696 -16.48531 -16.03432 -15.68490 -15.36976 -15.14215 -15.09549 -14.50640 -14.37397 -14.02800 -13.62851 -13.38775 -13.20726 -13.17708 -12.76693 -12.65736 -12.33574 -12.28787 -12.10407 -11.96596 -11.83789 -11.41962 -11.16313 -10.59254 -9.81936 -9.70931 -9.32147 -9.19260 -8.29150 -6.28090 0.17765 0.29801 1.14770 1.33434 1.39602 1.45456 2.34226 2.59633 3.04435 3.10915 3.86141 3.90730 4.05513 4.13783 4.27328 4.38638 4.43754 4.56462 4.61964 4.64876 4.73804 4.78492 4.81655 5.01115 5.06128 5.17311 5.22788 5.28175 5.37951 5.51265 5.63480 5.80586 6.04803 6.27467 6.28937 6.62058 6.76448 6.78086 7.35262 8.86514 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.018884 B = 0.007320 C = 0.006295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.389055 B = 3824.380574 C = 4447.126433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.201 3.799 3 H 0.031 0.969 4 C -0.502 4.502 5 H 0.045 0.955 6 C 0.027 3.973 7 N -0.938 5.938 8 Si 0.916 3.084 9 H -0.273 1.273 10 H -0.291 1.291 11 H -0.235 1.235 12 N -0.496 5.496 13 C 0.037 3.963 14 C 0.099 3.901 15 C -0.157 4.157 16 C -0.036 4.036 17 Cl -0.075 7.075 18 C -0.116 4.116 19 C -0.083 4.083 20 C -0.073 4.073 21 C 0.115 3.885 22 N -0.850 5.850 23 H 0.049 0.951 24 H 0.044 0.956 25 H 0.056 0.944 26 H 0.265 0.735 27 H 0.032 0.968 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.129 0.871 31 H 0.157 0.843 32 H 0.162 0.838 33 H 0.033 0.967 34 H 0.095 0.905 35 H 0.346 0.654 36 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.119 4.870 17.278 17.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.095 3.905 3 H 0.049 0.951 4 C -0.541 4.541 5 H 0.064 0.936 6 C -0.171 4.171 7 N -0.578 5.578 8 Si 0.741 3.259 9 H -0.199 1.199 10 H -0.217 1.217 11 H -0.159 1.159 12 N -0.215 5.215 13 C -0.110 4.110 14 C 0.004 3.996 15 C -0.178 4.178 16 C -0.064 4.064 17 Cl -0.047 7.047 18 C -0.135 4.135 19 C -0.102 4.102 20 C -0.074 4.074 21 C -0.016 4.016 22 N -0.380 5.380 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.147 0.853 31 H 0.175 0.825 32 H 0.180 0.820 33 H 0.052 0.948 34 H 0.113 0.887 35 H 0.159 0.841 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.905 5.372 17.612 18.435 hybrid contribution -1.226 -0.438 -1.497 1.984 sum -2.131 4.934 16.115 16.987 Atomic orbital electron populations 1.23000 0.99936 1.00720 1.00622 1.19427 0.90051 0.93776 0.87257 0.95115 1.20978 1.34421 1.09233 0.89421 0.93645 1.25547 0.95444 1.00714 0.95431 1.70062 1.51147 1.37776 0.98829 0.86383 0.79361 0.81671 0.78495 1.19905 1.21748 1.15871 1.59811 1.59146 1.02464 1.00124 1.22330 0.97344 0.89191 1.02115 1.19017 0.91250 0.96510 0.92792 1.21926 0.97805 1.01360 0.96716 1.20937 0.86052 1.02495 0.96871 1.98348 1.19839 1.96959 1.89516 1.21284 0.91276 1.00097 1.00833 1.21209 0.96633 0.96952 0.95364 1.20075 0.95426 0.96996 0.94952 1.20507 0.91654 0.94458 0.94934 1.59004 1.09154 1.55006 1.14802 0.93244 0.93689 0.92483 0.92619 0.94965 0.91986 0.91142 0.85349 0.82518 0.82000 0.94839 0.88671 0.84119 0.84864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.60 6.64 71.98 0.48 -7.12 16 2 C 0.20 8.84 1.50 44.17 0.07 8.91 16 3 H 0.03 1.41 5.71 -2.39 -0.01 1.40 16 4 C -0.50 -26.73 8.41 25.60 0.22 -26.52 16 5 H 0.05 2.70 7.07 -2.91 -0.02 2.68 16 6 C 0.03 1.50 5.30 84.65 0.45 1.95 16 7 N -0.94 -56.31 13.96 21.45 0.30 -56.01 16 8 Si 0.92 42.44 25.74 68.60 1.77 44.20 16 9 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 10 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 11 H -0.24 -10.11 5.45 99.48 0.54 -9.57 16 12 N -0.50 -18.91 3.73 -700.25 -2.61 -21.52 16 13 C 0.04 1.34 8.52 127.69 1.09 2.43 16 14 C 0.10 3.32 4.67 38.21 0.18 3.50 16 15 C -0.16 -4.93 6.98 22.42 0.16 -4.78 16 16 C -0.04 -0.97 6.32 22.31 0.14 -0.83 16 17 Cl -0.08 -1.84 28.95 -2.72 -0.08 -1.92 16 18 C -0.12 -2.63 9.83 22.32 0.22 -2.41 16 19 C -0.08 -1.89 9.66 22.25 0.21 -1.68 16 20 C -0.07 -2.11 5.41 -19.73 -0.11 -2.21 16 21 C 0.11 3.16 6.54 85.56 0.56 3.72 16 22 N -0.85 -25.68 9.61 -189.99 -1.83 -27.51 16 23 H 0.05 1.86 5.86 -2.39 -0.01 1.85 16 24 H 0.04 1.96 4.91 -2.39 -0.01 1.95 16 25 H 0.06 2.26 5.59 -2.39 -0.01 2.25 16 26 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 27 H 0.03 1.10 5.10 -2.39 -0.01 1.09 16 28 H 0.06 2.56 6.47 -2.39 -0.02 2.55 16 29 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.13 4.19 4.96 -2.91 -0.01 4.18 16 31 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 32 H 0.16 2.67 8.03 -2.91 -0.02 2.65 16 33 H 0.03 1.04 7.80 -2.39 -0.02 1.02 16 34 H 0.10 2.05 8.00 -2.39 -0.02 2.03 16 35 H 0.35 9.14 9.08 -89.70 -0.81 8.33 16 36 H 0.34 12.35 7.24 -89.69 -0.65 11.70 16 Total: -1.00 -59.96 291.75 0.71 -59.25 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: -0.50 Total: 28.55 kcal Atomic # 6 Polarization: -28.69 SS G_CDS: 3.66 Total: -25.04 kcal Atomic # 7 Polarization: -100.90 SS G_CDS: -4.14 Total: -105.04 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.77 Total: 44.20 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -0.08 Total: -1.92 kcal Total: -59.96 0.71 -59.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723172201.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.260 kcal (2) G-P(sol) polarization free energy of solvation -59.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds