Wall clock time and date at job start Mon Mar 30 2020 06:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.46943 * 2 1 4 4 C 1.46889 * 110.99951 * 75.84637 * 3 2 1 5 5 C 1.50699 * 109.47197 * 199.27505 * 4 3 2 6 6 H 1.07995 * 120.00334 * 355.05470 * 5 4 3 7 7 C 1.37879 * 120.00098 * 175.05428 * 5 4 3 8 8 N 1.31519 * 119.99918 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00045 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47240 * 89.99831 * 9 7 5 11 11 H 1.48506 * 109.47096 * 210.00154 * 9 7 5 12 12 H 1.48500 * 109.46906 * 329.99672 * 9 7 5 13 13 C 1.39752 * 110.99831 * 199.80299 * 3 2 1 14 14 C 1.38887 * 120.07708 * 295.77056 * 13 3 2 15 15 C 1.38111 * 119.93779 * 179.70254 * 14 13 3 16 16 C 1.38306 * 120.09191 * 0.57496 * 15 14 13 17 17 C 1.50693 * 119.91951 * 179.74537 * 16 15 14 18 18 N 1.46898 * 109.47185 * 269.97837 * 17 16 15 19 19 C 1.38267 * 120.15400 * 359.72321 * 16 15 14 20 20 C 1.38207 * 120.06513 * 359.97438 * 19 16 15 21 21 Cl 1.73605 * 120.04790 * 180.02562 * 20 19 16 22 22 H 1.09000 * 109.47728 * 54.85607 * 1 2 3 23 23 H 1.09004 * 109.47010 * 174.85832 * 1 2 3 24 24 H 1.09005 * 109.47097 * 294.84930 * 1 2 3 25 25 H 1.09000 * 109.46954 * 240.00170 * 2 1 3 26 26 H 1.08993 * 109.47329 * 120.00450 * 2 1 3 27 27 H 1.09008 * 109.47482 * 79.27485 * 4 3 2 28 28 H 1.08998 * 109.47277 * 319.27568 * 4 3 2 29 29 H 0.97003 * 119.99915 * 180.02562 * 8 7 5 30 30 H 1.08001 * 120.02892 * 359.97438 * 14 13 3 31 31 H 1.07993 * 119.95616 * 180.27582 * 15 14 13 32 32 H 1.09007 * 109.47436 * 29.97545 * 17 16 15 33 33 H 1.08997 * 109.47205 * 149.97586 * 17 16 15 34 34 H 1.00904 * 111.00525 * 180.02562 * 18 17 16 35 35 H 1.00901 * 111.00166 * 303.95419 * 18 17 16 36 36 H 1.08004 * 119.96286 * 179.97438 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8789 1.9931 1.3297 5 6 1.9301 3.4939 1.2037 6 1 2.1344 3.9488 0.2458 7 6 1.7162 4.2864 2.3115 8 7 1.4679 3.7325 3.4783 9 14 1.7790 6.1468 2.1552 10 1 0.4244 6.6625 1.8327 11 1 2.2406 6.7360 3.4379 12 1 2.7222 6.5209 1.0709 13 6 3.3439 1.4480 -0.4420 14 6 4.3527 0.8385 0.2927 15 6 5.6596 0.8973 -0.1500 16 6 5.9666 1.5723 -1.3175 17 6 7.3946 1.6389 -1.7939 18 7 8.0455 2.8270 -1.2257 19 6 4.9661 2.1857 -2.0487 20 6 3.6553 2.1256 -1.6149 21 17 2.3994 2.8954 -2.5337 22 1 -0.3634 0.5915 -0.8403 23 1 -0.3633 -1.0236 -0.0921 24 1 -0.3633 0.4319 0.9326 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.6919 1.6544 1.9721 28 1 0.9245 1.6974 1.7653 29 1 1.3170 4.2901 4.2576 30 1 4.1147 0.3153 1.2071 31 1 6.4436 0.4197 0.4187 32 1 7.9273 0.7440 -1.4719 33 1 7.4122 1.7004 -2.8820 34 1 9.0049 2.8945 -1.5309 35 1 7.5332 3.6651 -1.4565 36 1 5.2094 2.7124 -2.9597 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723172557.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:34 Heat of formation + Delta-G solvation = 0.814171 kcal Electronic energy + Delta-G solvation = -18488.363912 eV Core-core repulsion = 15611.145697 eV Total energy + Delta-G solvation = -2877.218215 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.91919 -38.28144 -37.20671 -35.23050 -34.66083 -32.04697 -31.65492 -30.32757 -28.30459 -25.54908 -24.44211 -23.78980 -22.63477 -21.17942 -18.63289 -17.90722 -17.18533 -16.92318 -16.47996 -16.05430 -15.74053 -15.45035 -15.12418 -14.77650 -14.71284 -14.25404 -13.94192 -13.38930 -13.35176 -13.04495 -12.90432 -12.76033 -12.56020 -12.43732 -12.32002 -12.22216 -12.05539 -11.62752 -11.46722 -11.30460 -10.57963 -9.78896 -9.56182 -9.32345 -9.15228 -8.17251 -6.23454 0.28318 0.33016 1.38580 1.39270 1.43483 1.50447 2.40896 2.65219 3.11019 3.18815 3.81403 3.89187 3.97400 4.13603 4.26549 4.33002 4.44354 4.50137 4.60705 4.68441 4.76035 4.88946 4.93771 5.04267 5.12475 5.22525 5.25896 5.39015 5.51352 5.55947 5.71865 5.84095 6.07381 6.23395 6.46309 6.64441 6.68342 6.91703 7.44183 8.93515 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.013956 B = 0.007761 C = 0.006498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.773753 B = 3607.056686 C = 4308.017186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.058 3.942 3 N -0.507 5.507 4 C 0.215 3.785 5 C -0.509 4.509 6 H 0.061 0.939 7 C 0.005 3.995 8 N -0.934 5.934 9 Si 0.955 3.045 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.269 1.269 13 C 0.113 3.887 14 C -0.153 4.153 15 C -0.088 4.088 16 C -0.087 4.087 17 C 0.112 3.888 18 N -0.858 5.858 19 C -0.104 4.104 20 C -0.031 4.031 21 Cl -0.068 7.068 22 H 0.055 0.945 23 H 0.082 0.918 24 H 0.035 0.965 25 H 0.076 0.924 26 H 0.027 0.973 27 H -0.029 1.029 28 H 0.016 0.984 29 H 0.262 0.738 30 H 0.114 0.886 31 H 0.143 0.857 32 H 0.093 0.907 33 H 0.055 0.945 34 H 0.356 0.644 35 H 0.343 0.657 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.847 -6.314 -12.258 16.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.068 4.068 3 N -0.229 5.229 4 C 0.090 3.910 5 C -0.547 4.547 6 H 0.079 0.921 7 C -0.192 4.192 8 N -0.575 5.575 9 Si 0.780 3.220 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.193 1.193 13 C 0.018 3.982 14 C -0.174 4.174 15 C -0.107 4.107 16 C -0.088 4.088 17 C -0.017 4.017 18 N -0.390 5.390 19 C -0.124 4.124 20 C -0.059 4.059 21 Cl -0.039 7.039 22 H 0.074 0.926 23 H 0.101 0.899 24 H 0.054 0.946 25 H 0.095 0.905 26 H 0.046 0.954 27 H -0.011 1.011 28 H 0.034 0.966 29 H 0.071 0.929 30 H 0.132 0.868 31 H 0.161 0.839 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.170 0.830 35 H 0.156 0.844 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.251 -6.289 -11.784 16.248 hybrid contribution -0.002 0.933 0.127 0.942 sum 9.249 -5.356 -11.657 15.815 Atomic orbital electron populations 1.21671 0.94082 1.01980 1.01421 1.22099 0.97001 0.87605 1.00113 1.59793 1.16233 1.17844 1.29068 1.19507 0.94500 0.94075 0.82899 1.21454 1.46443 0.91903 0.94919 0.92066 1.25735 0.95314 1.03229 0.94938 1.70061 1.50367 1.36872 1.00217 0.85596 0.78592 0.80321 0.77493 1.19940 1.20707 1.19325 1.18807 0.90110 0.96025 0.93275 1.21690 0.94217 1.01656 0.99807 1.21133 0.95252 0.98521 0.95786 1.19907 0.95878 0.98008 0.94999 1.20641 0.88869 0.95141 0.97094 1.58656 1.07293 1.05398 1.67679 1.21036 0.89587 1.00445 1.01296 1.21026 0.90304 0.99957 0.94579 1.98319 1.53682 1.79768 1.72139 0.92581 0.89919 0.94591 0.90511 0.95422 1.01104 0.96582 0.92893 0.86759 0.83942 0.88896 0.92731 0.82953 0.84394 0.83355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 9.96 71.98 0.72 -3.78 16 2 C 0.06 2.11 5.26 86.30 0.45 2.57 16 3 N -0.51 -22.23 3.74 -699.48 -2.62 -24.84 16 4 C 0.21 11.43 4.48 85.56 0.38 11.81 16 5 C -0.51 -29.40 8.95 25.60 0.23 -29.17 16 6 H 0.06 3.55 7.81 -2.91 -0.02 3.52 16 7 C 0.01 0.31 5.46 84.65 0.46 0.78 16 8 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 9 Si 0.95 45.98 29.54 68.60 2.03 48.00 16 10 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 13 C 0.11 4.56 4.19 38.21 0.16 4.72 16 14 C -0.15 -5.65 8.56 22.40 0.19 -5.46 16 15 C -0.09 -2.63 9.69 22.26 0.22 -2.41 16 16 C -0.09 -2.31 5.39 -19.84 -0.11 -2.42 16 17 C 0.11 2.09 6.91 85.55 0.59 2.68 16 18 N -0.86 -16.26 9.61 -190.02 -1.83 -18.09 16 19 C -0.10 -3.05 9.47 22.27 0.21 -2.83 16 20 C -0.03 -1.14 6.34 22.44 0.14 -0.99 16 21 Cl -0.07 -2.49 28.44 -2.72 -0.08 -2.57 16 22 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 23 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 24 H 0.03 1.36 6.90 -2.38 -0.02 1.34 16 25 H 0.08 2.48 7.92 -2.39 -0.02 2.46 16 26 H 0.03 1.00 7.97 -2.39 -0.02 0.98 16 27 H -0.03 -1.64 6.70 -2.38 -0.02 -1.65 16 28 H 0.02 0.92 6.57 -2.39 -0.02 0.91 16 29 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 30 H 0.11 4.33 7.41 -2.91 -0.02 4.30 16 31 H 0.14 3.56 8.06 -2.91 -0.02 3.53 16 32 H 0.09 1.50 8.08 -2.38 -0.02 1.48 16 33 H 0.05 0.81 8.08 -2.39 -0.02 0.79 16 34 H 0.36 4.72 9.08 -89.69 -0.81 3.91 16 35 H 0.34 6.72 8.99 -89.69 -0.81 5.92 16 36 H 0.15 3.51 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -66.64 316.80 0.92 -65.72 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -0.52 Total: 12.85 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: 3.65 Total: -24.50 kcal Atomic # 7 Polarization: -95.35 SS G_CDS: -4.16 Total: -99.51 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Atomic # 17 Polarization: -2.49 SS G_CDS: -0.08 Total: -2.57 kcal Total: -66.64 0.92 -65.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723172557.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.535 kcal (2) G-P(sol) polarization free energy of solvation -66.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds