Wall clock time and date at job start Mon Mar 30 2020 07:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86804 * 119.99988 * 2 1 4 4 H 1.48497 * 109.47331 * 270.00406 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00456 * 3 2 1 6 6 H 1.48497 * 109.46773 * 149.99947 * 3 2 1 7 7 C 1.39944 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00265 * 162.21906 * 7 2 1 9 9 C 1.41400 * 119.99801 * 342.21704 * 7 2 1 10 10 C 1.40732 * 120.24311 * 335.28012 * 9 7 2 11 11 C 1.37600 * 119.74178 * 180.02562 * 10 9 7 12 12 C 1.38654 * 120.25002 * 359.71941 * 11 10 9 13 13 C 1.38619 * 120.49909 * 0.55999 * 12 11 10 14 14 C 1.50700 * 119.87434 * 179.72263 * 13 12 11 15 15 O 1.42903 * 109.46851 * 269.72334 * 14 13 12 16 16 C 1.42901 * 113.99932 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.46750 * 179.97438 * 16 15 14 18 18 C 1.38234 * 119.99891 * 90.00397 * 17 16 15 19 19 C 1.38245 * 119.99956 * 179.97438 * 18 17 16 20 20 C 1.38239 * 119.99606 * 0.08628 * 19 18 17 21 21 C 1.38229 * 120.00257 * 359.86841 * 20 19 18 22 22 C 1.38234 * 120.00130 * 269.97383 * 17 16 15 23 23 C 1.37637 * 120.24806 * 359.43722 * 13 12 11 24 24 H 0.97000 * 119.99400 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.13332 * 359.97438 * 10 9 7 26 26 H 1.08000 * 119.87239 * 180.02562 * 11 10 9 27 27 H 1.08001 * 119.75446 * 180.29836 * 12 11 10 28 28 H 1.08994 * 109.47052 * 149.72378 * 14 13 12 29 29 H 1.09005 * 109.47271 * 29.71841 * 14 13 12 30 30 H 1.09001 * 109.46846 * 59.99987 * 16 15 14 31 31 H 1.09000 * 109.47095 * 299.99866 * 16 15 14 32 32 H 1.07995 * 120.00279 * 359.69410 * 18 17 16 33 33 H 1.07995 * 120.00117 * 179.97438 * 19 18 17 34 34 H 1.08002 * 119.99313 * 179.97438 * 20 19 18 35 35 H 1.08001 * 120.00081 * 180.02562 * 21 20 19 36 36 H 1.08007 * 119.99932 * 0.02562 * 22 17 16 37 37 H 1.08002 * 120.12550 * 180.25048 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4398 2.6527 0.7001 6 1 3.5398 1.4401 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0492 -1.2342 -0.2861 9 6 1.3516 -2.4074 0.3729 10 6 0.2235 -2.3639 1.2132 11 6 -0.4069 -3.5336 1.5706 12 6 0.0617 -4.7513 1.1014 13 6 1.1754 -4.8064 0.2779 14 6 1.6765 -6.1380 -0.2189 15 8 2.6349 -6.6605 0.7034 16 6 3.1760 -7.9275 0.3240 17 6 4.1702 -8.3803 1.3621 18 6 3.7494 -9.1416 2.4364 19 6 4.6615 -9.5574 3.3884 20 6 5.9941 -9.2103 3.2669 21 6 6.4150 -8.4498 2.1921 22 6 5.5030 -8.0348 1.2397 23 6 1.8218 -3.6491 -0.0925 24 1 -0.4849 0.8401 0.0004 25 1 -0.1455 -1.4163 1.5768 26 1 -1.2731 -3.5026 2.2150 27 1 -0.4422 -5.6641 1.3831 28 1 2.1442 -6.0091 -1.1948 29 1 0.8401 -6.8317 -0.3055 30 1 3.6750 -7.8352 -0.6407 31 1 2.3709 -8.6584 0.2482 32 1 2.7073 -9.4078 2.5345 33 1 4.3327 -10.1518 4.2280 34 1 6.7065 -9.5348 4.0109 35 1 7.4561 -8.1789 2.0970 36 1 5.8318 -7.4400 0.4002 37 1 2.6869 -3.6941 -0.7375 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725242043.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:47 Heat of formation + Delta-G solvation = -10.475667 kcal Electronic energy + Delta-G solvation = -18599.500185 eV Core-core repulsion = 15691.932504 eV Total energy + Delta-G solvation = -2907.567681 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.34294 -37.97695 -36.76915 -33.73215 -32.06510 -30.92446 -30.17638 -29.80153 -26.18529 -25.27259 -24.50090 -22.60293 -21.31124 -20.70293 -20.10068 -17.15808 -16.81557 -16.11689 -15.77192 -15.45171 -15.22096 -14.68559 -14.46472 -14.06466 -13.46610 -13.30974 -13.22320 -12.75252 -12.53095 -12.17906 -11.83267 -11.58735 -11.36116 -11.13563 -11.05439 -10.96825 -10.84350 -10.58254 -10.38580 -9.62749 -9.42133 -9.25138 -9.10456 -8.93833 -8.83586 -7.45126 -7.32416 -6.73429 -4.32789 1.25423 1.38244 2.77200 2.89106 3.08846 3.13261 3.23411 3.69117 3.95938 4.37243 4.69350 4.80246 4.92072 5.01466 5.11933 5.27822 5.41084 5.52080 5.61993 5.71356 5.75224 5.79666 5.94562 6.01799 6.05879 6.39189 6.41237 6.45689 6.51882 6.60949 6.94864 6.95716 7.07864 7.24255 7.38628 7.54762 7.63117 7.91173 8.06428 8.10306 8.29524 8.65407 8.91767 8.99232 10.22153 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.024061 B = 0.003658 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.418229 B = 7652.641915 C = 8265.696904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.465 4.465 8 H 0.077 0.923 9 C 0.106 3.894 10 C -0.156 4.156 11 C -0.110 4.110 12 C -0.217 4.217 13 C -0.074 4.074 14 C 0.113 3.887 15 O -0.371 6.371 16 C 0.098 3.902 17 C -0.083 4.083 18 C -0.099 4.099 19 C -0.126 4.126 20 C -0.120 4.120 21 C -0.125 4.125 22 C -0.098 4.098 23 C -0.200 4.200 24 H 0.280 0.720 25 H 0.118 0.882 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.047 0.953 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.039 -13.800 2.272 15.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.495 4.495 8 H 0.095 0.905 9 C 0.104 3.896 10 C -0.175 4.175 11 C -0.129 4.129 12 C -0.236 4.236 13 C -0.074 4.074 14 C 0.037 3.963 15 O -0.291 6.291 16 C 0.021 3.979 17 C -0.083 4.083 18 C -0.118 4.118 19 C -0.144 4.144 20 C -0.138 4.138 21 C -0.143 4.143 22 C -0.117 4.117 23 C -0.219 4.219 24 H 0.091 0.909 25 H 0.136 0.864 26 H 0.107 0.893 27 H 0.105 0.895 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.882 -13.533 2.414 15.373 hybrid contribution 0.192 0.688 -0.248 0.756 sum 7.074 -12.846 2.167 14.824 Atomic orbital electron populations 1.69826 1.07571 1.29124 1.35725 1.25888 0.94701 1.01242 0.92247 0.86346 0.80708 0.80699 0.79170 1.19541 1.20118 1.18466 1.19540 0.98076 0.91218 1.40644 0.90495 1.17581 0.91305 0.91896 0.88834 1.21366 0.99048 0.96805 1.00311 1.20668 0.98912 0.93261 1.00036 1.20212 1.00817 0.96182 1.06422 1.18956 0.96495 0.91889 1.00058 1.21352 0.90075 0.93499 0.91368 1.88135 1.58992 1.33579 1.48373 1.21272 0.94508 0.86956 0.95156 1.19697 0.94008 0.97955 0.96609 1.21086 0.99606 0.97496 0.93573 1.21128 0.93489 1.00705 0.99036 1.21157 0.96013 0.98617 0.98004 1.21137 0.99603 0.98697 0.94842 1.21109 0.92764 0.98440 0.99340 1.20855 1.02700 0.92295 1.06078 0.90944 0.86413 0.89295 0.89547 0.93524 0.93748 0.92817 0.92896 0.85959 0.86072 0.86216 0.86023 0.85862 0.88977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.88 10.97 55.55 0.61 -20.27 16 2 C 0.08 1.95 5.14 -17.34 -0.09 1.86 16 3 Si 0.91 18.93 29.60 -169.99 -5.03 13.90 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 6 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.47 -12.62 9.05 -37.74 -0.34 -12.96 16 8 H 0.08 2.01 7.91 -52.49 -0.41 1.60 16 9 C 0.11 2.91 5.57 -106.82 -0.60 2.31 16 10 C -0.16 -4.17 8.70 -38.87 -0.34 -4.50 16 11 C -0.11 -2.68 10.02 -39.66 -0.40 -3.07 16 12 C -0.22 -5.04 9.70 -39.29 -0.38 -5.42 16 13 C -0.07 -1.71 5.50 -104.70 -0.58 -2.29 16 14 C 0.11 2.12 6.06 36.01 0.22 2.33 16 15 O -0.37 -6.97 10.31 -35.23 -0.36 -7.34 16 16 C 0.10 1.38 6.06 36.01 0.22 1.60 16 17 C -0.08 -1.14 5.51 -104.62 -0.58 -1.71 16 18 C -0.10 -1.25 9.70 -39.58 -0.38 -1.63 16 19 C -0.13 -1.39 10.05 -39.58 -0.40 -1.78 16 20 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 21 C -0.12 -1.40 10.05 -39.59 -0.40 -1.80 16 22 C -0.10 -1.26 9.70 -39.58 -0.38 -1.65 16 23 C -0.20 -5.07 9.44 -38.87 -0.37 -5.44 16 24 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 25 H 0.12 3.22 6.18 -52.49 -0.32 2.89 16 26 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 27 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 28 H 0.05 0.81 8.08 -51.93 -0.42 0.39 16 29 H 0.04 0.74 8.08 -51.93 -0.42 0.32 16 30 H 0.05 0.68 8.08 -51.93 -0.42 0.26 16 31 H 0.05 0.65 8.09 -51.93 -0.42 0.23 16 32 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 33 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.12 1.45 8.06 -52.48 -0.42 1.02 16 37 H 0.09 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 321.67 15.07 4.85 4.85 Total: -1.00 -29.54 321.67 -10.06 -39.60 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -4.94 Total: 5.09 kcal Atomic # 6 Polarization: -30.64 SS G_CDS: -5.19 Total: -35.82 kcal Atomic # 7 Polarization: -20.88 SS G_CDS: 0.61 Total: -20.27 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -0.36 Total: -7.34 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.54 -10.06 -39.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725242043.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.124 kcal (2) G-P(sol) polarization free energy of solvation -29.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds