Wall clock time and date at job start Mon Mar 30 2020 07:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86804 * 119.99988 * 2 1 4 4 H 1.48497 * 109.47331 * 270.00406 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00456 * 3 2 1 6 6 H 1.48497 * 109.46773 * 149.99947 * 3 2 1 7 7 C 1.39944 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00265 * 162.21906 * 7 2 1 9 9 C 1.41400 * 119.99801 * 342.21704 * 7 2 1 10 10 C 1.40732 * 120.24311 * 335.28012 * 9 7 2 11 11 C 1.37600 * 119.74178 * 180.02562 * 10 9 7 12 12 C 1.38654 * 120.25002 * 359.71941 * 11 10 9 13 13 C 1.38619 * 120.49909 * 0.55999 * 12 11 10 14 14 C 1.50700 * 119.87434 * 179.72263 * 13 12 11 15 15 O 1.42903 * 109.46851 * 269.72334 * 14 13 12 16 16 C 1.42901 * 113.99932 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.46750 * 179.97438 * 16 15 14 18 18 C 1.38234 * 119.99891 * 90.00397 * 17 16 15 19 19 C 1.38245 * 119.99956 * 179.97438 * 18 17 16 20 20 C 1.38239 * 119.99606 * 0.08628 * 19 18 17 21 21 C 1.38229 * 120.00257 * 359.86841 * 20 19 18 22 22 C 1.38234 * 120.00130 * 269.97383 * 17 16 15 23 23 C 1.37637 * 120.24806 * 359.43722 * 13 12 11 24 24 H 0.97000 * 119.99400 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.13332 * 359.97438 * 10 9 7 26 26 H 1.08000 * 119.87239 * 180.02562 * 11 10 9 27 27 H 1.08001 * 119.75446 * 180.29836 * 12 11 10 28 28 H 1.08994 * 109.47052 * 149.72378 * 14 13 12 29 29 H 1.09005 * 109.47271 * 29.71841 * 14 13 12 30 30 H 1.09001 * 109.46846 * 59.99987 * 16 15 14 31 31 H 1.09000 * 109.47095 * 299.99866 * 16 15 14 32 32 H 1.07995 * 120.00279 * 359.69410 * 18 17 16 33 33 H 1.07995 * 120.00117 * 179.97438 * 19 18 17 34 34 H 1.08002 * 119.99313 * 179.97438 * 20 19 18 35 35 H 1.08001 * 120.00081 * 180.02562 * 21 20 19 36 36 H 1.08007 * 119.99932 * 0.02562 * 22 17 16 37 37 H 1.08002 * 120.12550 * 180.25048 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4398 2.6527 0.7001 6 1 3.5398 1.4401 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0492 -1.2342 -0.2861 9 6 1.3516 -2.4074 0.3729 10 6 0.2235 -2.3639 1.2132 11 6 -0.4069 -3.5336 1.5706 12 6 0.0617 -4.7513 1.1014 13 6 1.1754 -4.8064 0.2779 14 6 1.6765 -6.1380 -0.2189 15 8 2.6349 -6.6605 0.7034 16 6 3.1760 -7.9275 0.3240 17 6 4.1702 -8.3803 1.3621 18 6 3.7494 -9.1416 2.4364 19 6 4.6615 -9.5574 3.3884 20 6 5.9941 -9.2103 3.2669 21 6 6.4150 -8.4498 2.1921 22 6 5.5030 -8.0348 1.2397 23 6 1.8218 -3.6491 -0.0925 24 1 -0.4849 0.8401 0.0004 25 1 -0.1455 -1.4163 1.5768 26 1 -1.2731 -3.5026 2.2150 27 1 -0.4422 -5.6641 1.3831 28 1 2.1442 -6.0091 -1.1948 29 1 0.8401 -6.8317 -0.3055 30 1 3.6750 -7.8352 -0.6407 31 1 2.3709 -8.6584 0.2482 32 1 2.7073 -9.4078 2.5345 33 1 4.3327 -10.1518 4.2280 34 1 6.7065 -9.5348 4.0109 35 1 7.4561 -8.1789 2.0970 36 1 5.8318 -7.4400 0.4002 37 1 2.6869 -3.6941 -0.7375 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725242043.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:47 Heat of formation + Delta-G solvation = -24.400875 kcal Electronic energy + Delta-G solvation = -18600.104027 eV Core-core repulsion = 15691.932504 eV Total energy + Delta-G solvation = -2908.171523 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.32007 -39.63432 -38.25647 -35.62209 -33.21616 -31.81318 -31.78941 -31.73333 -27.50693 -27.11505 -25.98682 -23.47662 -22.62620 -22.27837 -21.92262 -18.96755 -17.84208 -17.46148 -17.20407 -16.92588 -16.47518 -16.31278 -15.74955 -15.53952 -14.93093 -14.74029 -14.27260 -14.22376 -13.72864 -13.62055 -13.45062 -13.09069 -12.93141 -12.84190 -12.66500 -12.40614 -12.14222 -11.90703 -11.84008 -11.46817 -11.30554 -11.03045 -10.56111 -9.82137 -9.76303 -9.40830 -9.25821 -8.64899 -6.36117 0.32642 0.49994 0.94768 1.00241 1.37433 1.48234 1.54113 2.20811 2.59056 2.79869 3.27486 3.75444 3.91644 3.91857 4.15459 4.21662 4.23142 4.31286 4.36131 4.45184 4.49800 4.59359 4.66282 4.70741 4.77193 5.01017 5.07745 5.11628 5.15700 5.27822 5.47059 5.54764 5.60073 5.66614 5.68510 5.99330 6.07763 6.10170 6.15192 6.27942 6.36966 6.67273 6.92462 7.01290 8.33178 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.024061 B = 0.003658 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.418229 B = 7652.641915 C = 8265.696904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.036 3.964 3 Si 0.982 3.018 4 H -0.260 1.260 5 H -0.264 1.264 6 H -0.261 1.261 7 C -0.504 4.504 8 H 0.073 0.927 9 C 0.076 3.924 10 C -0.185 4.185 11 C -0.113 4.113 12 C -0.219 4.219 13 C -0.075 4.075 14 C 0.118 3.882 15 O -0.399 6.399 16 C 0.095 3.905 17 C -0.108 4.108 18 C -0.114 4.114 19 C -0.130 4.130 20 C -0.121 4.121 21 C -0.132 4.132 22 C -0.118 4.118 23 C -0.221 4.221 24 H 0.289 0.711 25 H 0.102 0.898 26 H 0.114 0.886 27 H 0.117 0.883 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.130 0.870 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.143 0.857 36 H 0.124 0.876 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.675 -14.955 2.878 17.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.179 4.179 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.185 1.185 7 C -0.534 4.534 8 H 0.091 0.909 9 C 0.074 3.926 10 C -0.204 4.204 11 C -0.131 4.131 12 C -0.238 4.238 13 C -0.075 4.075 14 C 0.043 3.957 15 O -0.319 6.319 16 C 0.020 3.980 17 C -0.108 4.108 18 C -0.132 4.132 19 C -0.148 4.148 20 C -0.139 4.139 21 C -0.150 4.150 22 C -0.136 4.136 23 C -0.241 4.241 24 H 0.099 0.901 25 H 0.120 0.880 26 H 0.132 0.868 27 H 0.135 0.865 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.148 0.852 33 H 0.164 0.836 34 H 0.166 0.834 35 H 0.161 0.839 36 H 0.142 0.858 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.511 -14.715 3.016 16.795 hybrid contribution 0.004 0.886 -0.395 0.970 sum 7.515 -13.830 2.620 15.957 Atomic orbital electron populations 1.69873 1.08993 1.30585 1.35793 1.26755 0.95512 1.04476 0.91122 0.85211 0.79064 0.75871 0.79598 1.18485 1.18840 1.18490 1.19798 0.98260 0.92600 1.42727 0.90889 1.17960 0.92107 0.92993 0.89558 1.21341 1.00085 0.97204 1.01795 1.20990 0.99287 0.92955 0.99871 1.20614 1.00689 0.96888 1.05621 1.19437 0.95878 0.93445 0.98734 1.21254 0.91267 0.91759 0.91470 1.88066 1.59154 1.35915 1.48779 1.21480 0.95261 0.85352 0.95952 1.19833 0.94323 0.99266 0.97426 1.21320 1.00502 0.97687 0.93729 1.21489 0.93566 1.00470 0.99281 1.21563 0.96512 0.97645 0.98150 1.21466 1.00491 0.98423 0.94587 1.21315 0.93061 0.99068 1.00173 1.21036 1.03371 0.92797 1.06901 0.90076 0.87957 0.86797 0.86506 0.92440 0.91185 0.91690 0.91010 0.85178 0.83619 0.83395 0.83930 0.85756 0.88906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.30 10.97 21.83 0.24 -44.06 16 2 C 0.04 1.87 5.14 85.26 0.44 2.31 16 3 Si 0.98 39.19 29.60 68.60 2.03 41.22 16 4 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 5 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 6 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 7 C -0.50 -28.41 9.05 23.46 0.21 -28.20 16 8 H 0.07 3.99 7.91 -2.91 -0.02 3.96 16 9 C 0.08 4.31 5.57 -21.29 -0.12 4.20 16 10 C -0.18 -10.17 8.70 22.73 0.20 -9.97 16 11 C -0.11 -5.46 10.02 22.22 0.22 -5.24 16 12 C -0.22 -9.92 9.70 22.46 0.22 -9.70 16 13 C -0.07 -3.44 5.50 -19.92 -0.11 -3.55 16 14 C 0.12 4.25 6.06 71.24 0.43 4.68 16 15 O -0.40 -14.54 10.31 -148.98 -1.54 -16.08 16 16 C 0.10 2.57 6.06 71.24 0.43 3.00 16 17 C -0.11 -2.88 5.51 -19.87 -0.11 -2.99 16 18 C -0.11 -2.71 9.70 22.27 0.22 -2.49 16 19 C -0.13 -2.58 10.05 22.27 0.22 -2.36 16 20 C -0.12 -2.26 10.05 22.27 0.22 -2.04 16 21 C -0.13 -2.74 10.05 22.27 0.22 -2.52 16 22 C -0.12 -2.94 9.70 22.27 0.22 -2.73 16 23 C -0.22 -11.52 9.44 22.73 0.21 -11.31 16 24 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 25 H 0.10 5.83 6.18 -2.91 -0.02 5.81 16 26 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 27 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 28 H 0.06 1.92 8.08 -2.39 -0.02 1.90 16 29 H 0.07 2.15 8.08 -2.38 -0.02 2.13 16 30 H 0.06 1.56 8.08 -2.39 -0.02 1.55 16 31 H 0.07 1.63 8.09 -2.39 -0.02 1.61 16 32 H 0.13 2.73 8.06 -2.91 -0.02 2.71 16 33 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 34 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 35 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 36 H 0.12 2.91 8.06 -2.91 -0.02 2.88 16 37 H 0.09 4.64 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -65.07 321.67 4.91 -60.16 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: 1.05 Total: 27.65 kcal Atomic # 6 Polarization: -72.02 SS G_CDS: 3.13 Total: -68.89 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.24 Total: -44.06 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -1.54 Total: -16.08 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Total: -65.07 4.91 -60.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725242043.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.758 kcal (2) G-P(sol) polarization free energy of solvation -65.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds