Wall clock time and date at job start Mon Mar 30 2020 07:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38235 * 120.00095 * 2 1 4 4 C 1.38229 * 120.00509 * 180.02562 * 3 2 1 5 5 C 1.38236 * 119.99837 * 359.94952 * 4 3 2 6 6 C 1.50700 * 120.00251 * 180.02562 * 5 4 3 7 7 N 1.46498 * 109.46769 * 90.00266 * 6 5 4 8 8 C 1.38826 * 119.99929 * 179.72448 * 7 6 5 9 9 C 1.39803 * 119.58329 * 0.27967 * 8 7 6 10 10 C 1.38598 * 119.49027 * 179.97438 * 9 8 7 11 11 C 1.38380 * 118.68061 * 359.97438 * 10 9 8 12 12 C 1.40559 * 119.15236 * 0.02562 * 11 10 9 13 13 C 1.41316 * 119.78778 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99697 * 359.97438 * 13 12 11 15 15 C 1.40026 * 119.99906 * 179.97438 * 13 12 11 16 16 N 1.30740 * 120.00312 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99593 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47264 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46798 * 120.00373 * 17 15 13 20 20 H 1.48505 * 109.47212 * 240.00102 * 17 15 13 21 21 N 1.31955 * 119.58557 * 180.02562 * 8 7 6 22 22 C 1.38237 * 119.99834 * 0.28457 * 5 4 3 23 23 C 1.38235 * 120.00111 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.47046 * 90.00530 * 1 2 3 25 25 H 1.09000 * 109.46744 * 209.99698 * 1 2 3 26 26 H 1.08993 * 109.47304 * 330.00090 * 1 2 3 27 27 H 1.08004 * 119.99741 * 359.97438 * 3 2 1 28 28 H 1.08000 * 120.00220 * 179.97438 * 4 3 2 29 29 H 1.09004 * 109.47210 * 330.00623 * 6 5 4 30 30 H 1.08994 * 109.47121 * 210.00593 * 6 5 4 31 31 H 0.97001 * 120.00384 * 0.02562 * 7 6 5 32 32 H 1.07998 * 120.25142 * 359.95312 * 9 8 7 33 33 H 1.08002 * 120.65631 * 180.02562 * 10 9 8 34 34 H 1.07998 * 120.42591 * 179.97438 * 11 10 9 35 35 H 0.96995 * 120.00059 * 179.97438 * 16 15 13 36 36 H 1.08000 * 119.99739 * 179.72353 * 22 5 4 37 37 H 1.08000 * 120.00082 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0001 0.0000 6 6 5.7787 0.0001 0.0000 7 7 6.2670 0.0006 1.3812 8 6 7.6318 -0.0050 1.6350 9 6 8.5326 -0.0053 0.5658 10 6 9.8948 -0.0105 0.8214 11 6 10.3237 -0.0146 2.1370 12 6 9.3688 -0.0141 3.1685 13 6 9.7919 -0.0178 4.5168 14 1 10.8460 -0.0214 4.7520 15 6 8.8444 -0.0167 5.5479 16 7 7.5684 -0.0128 5.2632 17 14 9.4037 -0.0224 7.3302 18 1 10.8878 -0.0269 7.3833 19 1 8.8880 1.1905 8.0146 20 1 8.8800 -1.2346 8.0096 21 7 8.0626 -0.0050 2.8822 22 6 3.5806 -1.1971 -0.0049 23 6 2.1982 -1.1971 0.0005 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5138 27 1 1.6581 2.1325 -0.0004 28 1 4.1205 2.1326 -0.0010 29 1 6.1421 0.8899 -0.5142 30 1 6.1420 -0.8900 -0.5135 31 1 5.6366 0.0006 2.1185 32 1 8.1697 -0.0019 -0.4514 33 1 10.6074 -0.0103 0.0098 34 1 11.3786 -0.0191 2.3684 35 1 6.9121 -0.0125 5.9774 36 1 4.1206 -2.1323 -0.0090 37 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764388256.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:30 Heat of formation + Delta-G solvation = 54.483339 kcal Electronic energy + Delta-G solvation = -18855.755990 eV Core-core repulsion = 15983.297894 eV Total energy + Delta-G solvation = -2872.458096 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.48182 -38.13717 -35.35405 -33.47098 -32.43283 -30.89980 -30.36173 -29.24769 -27.32266 -25.30661 -24.13826 -22.68026 -21.50162 -20.79963 -20.19779 -17.33663 -16.67734 -15.69736 -15.51166 -15.04957 -14.75812 -14.58211 -14.15536 -13.79908 -13.46355 -13.28690 -13.22163 -12.98723 -12.41270 -12.36765 -11.91924 -11.81735 -11.80903 -11.18844 -10.95369 -10.93051 -10.92642 -10.56505 -10.41630 -9.88207 -9.47356 -8.89781 -8.84694 -8.55682 -7.87534 -7.47075 -6.47466 -6.29156 -4.44075 1.29334 1.44223 2.89428 3.13669 3.18166 3.27295 3.32704 3.68668 4.01166 4.50348 4.77619 4.80327 4.87931 4.99471 5.05526 5.19050 5.43368 5.50964 5.63002 5.67387 5.81840 5.91808 6.08304 6.11941 6.16291 6.19003 6.42057 6.57765 6.60829 6.73225 6.89598 6.92724 6.97165 7.03554 7.28685 7.63261 7.84860 7.95333 8.20991 8.40122 8.73052 8.84049 9.15972 10.28399 10.44168 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.020709 B = 0.004274 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.767421 B = 6549.587822 C = 7591.561832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C -0.125 4.125 4 C -0.096 4.096 5 C -0.099 4.099 6 C 0.181 3.819 7 N -0.734 5.734 8 C 0.411 3.589 9 C -0.368 4.368 10 C -0.032 4.032 11 C -0.317 4.317 12 C 0.292 3.708 13 C -0.435 4.435 14 H 0.083 0.917 15 C 0.071 3.929 16 N -0.716 5.716 17 Si 0.904 3.096 18 H -0.261 1.261 19 H -0.274 1.274 20 H -0.274 1.274 21 N -0.531 5.531 22 C -0.096 4.096 23 C -0.125 4.125 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.120 0.880 28 H 0.124 0.876 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.396 0.604 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.269 0.731 36 H 0.123 0.877 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.819 0.011 -8.178 14.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.143 4.143 4 C -0.115 4.115 5 C -0.100 4.100 6 C 0.056 3.944 7 N -0.371 5.371 8 C 0.172 3.828 9 C -0.394 4.394 10 C -0.056 4.056 11 C -0.340 4.340 12 C 0.165 3.835 13 C -0.467 4.467 14 H 0.101 0.899 15 C -0.154 4.154 16 N -0.337 5.337 17 Si 0.728 3.272 18 H -0.184 1.184 19 H -0.200 1.200 20 H -0.200 1.200 21 N -0.253 5.253 22 C -0.115 4.115 23 C -0.143 4.143 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.138 0.862 28 H 0.141 0.859 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.231 0.769 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.080 0.920 36 H 0.141 0.859 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.576 0.020 -7.603 14.696 hybrid contribution 0.610 -0.010 0.318 0.687 sum -11.966 0.011 -7.285 14.010 Atomic orbital electron populations 1.20780 0.91432 1.02690 1.02082 1.19921 0.95920 0.93324 0.99740 1.21000 0.94144 0.97429 1.01720 1.21112 0.94038 0.97848 0.98473 1.20018 0.95680 0.93304 1.00953 1.19933 0.87966 1.01164 0.85318 1.44151 1.03914 1.83939 1.05128 1.18529 0.83768 0.89842 0.90706 1.20607 0.93559 1.28703 0.96521 1.20591 0.94259 0.95240 0.95536 1.21532 0.98643 1.20607 0.93239 1.18211 0.85864 0.86511 0.92889 1.19615 0.94151 1.43527 0.89394 0.89868 1.26050 0.94657 0.93583 1.01077 1.70163 1.01103 1.29240 1.33232 0.86337 0.80195 0.78414 0.82210 1.18444 1.19968 1.19964 1.68213 1.16622 1.25064 1.15398 1.21115 0.94041 0.97842 0.98481 1.21002 0.94141 0.97429 1.01715 0.91359 0.91641 0.91641 0.86211 0.85851 0.92340 0.92346 0.76895 0.89213 0.88956 0.88730 0.92023 0.85855 0.86209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.01 36.01 0.36 -0.57 16 2 C -0.09 -1.00 5.88 -104.62 -0.62 -1.61 16 3 C -0.12 -1.47 9.70 -39.59 -0.38 -1.85 16 4 C -0.10 -1.27 9.70 -39.59 -0.38 -1.66 16 5 C -0.10 -1.42 5.25 -104.62 -0.55 -1.97 16 6 C 0.18 2.97 5.01 -5.19 -0.03 2.94 16 7 N -0.73 -15.25 5.71 -61.57 -0.35 -15.60 16 8 C 0.41 10.29 7.65 -155.32 -1.19 9.10 16 9 C -0.37 -8.65 9.34 -38.86 -0.36 -9.02 16 10 C -0.03 -0.75 10.15 -39.40 -0.40 -1.15 16 11 C -0.32 -8.19 9.83 -38.65 -0.38 -8.57 16 12 C 0.29 8.30 6.55 -85.00 -0.56 7.75 16 13 C -0.43 -11.99 9.14 -37.74 -0.34 -12.33 16 14 H 0.08 2.16 7.85 -52.49 -0.41 1.74 16 15 C 0.07 1.86 5.50 -17.35 -0.10 1.76 16 16 N -0.72 -19.42 11.46 55.55 0.64 -18.78 16 17 Si 0.90 19.02 29.56 -169.99 -5.02 13.99 16 18 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 19 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 N -0.53 -15.02 7.89 -10.32 -0.08 -15.10 16 22 C -0.10 -1.28 9.70 -39.58 -0.38 -1.66 16 23 C -0.12 -1.47 9.70 -39.58 -0.38 -1.85 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 26 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 27 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 28 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.06 0.94 7.87 -51.93 -0.41 0.53 16 30 H 0.06 0.94 7.86 -51.93 -0.41 0.53 16 31 H 0.40 8.45 8.58 -40.82 -0.35 8.10 16 32 H 0.09 1.87 6.68 -52.49 -0.35 1.52 16 33 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 34 H 0.09 2.27 8.06 -52.49 -0.42 1.84 16 35 H 0.27 6.61 8.29 -40.82 -0.34 6.28 16 36 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 37 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 318.83 15.07 4.80 4.80 Total: -1.00 -30.44 318.83 -10.57 -41.01 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -4.86 Total: 10.37 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: -5.69 Total: -20.70 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: 0.20 Total: -49.48 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 13.99 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.44 -10.57 -41.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764388256.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.495 kcal (2) G-P(sol) polarization free energy of solvation -30.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds