Wall clock time and date at job start Mon Mar 30 2020 07:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38235 * 120.00095 * 2 1 4 4 C 1.38229 * 120.00509 * 180.02562 * 3 2 1 5 5 C 1.38236 * 119.99837 * 359.94952 * 4 3 2 6 6 C 1.50700 * 120.00251 * 180.02562 * 5 4 3 7 7 N 1.46498 * 109.46769 * 90.00266 * 6 5 4 8 8 C 1.38826 * 119.99929 * 179.72448 * 7 6 5 9 9 C 1.39803 * 119.58329 * 0.27967 * 8 7 6 10 10 C 1.38598 * 119.49027 * 179.97438 * 9 8 7 11 11 C 1.38380 * 118.68061 * 359.97438 * 10 9 8 12 12 C 1.40559 * 119.15236 * 0.02562 * 11 10 9 13 13 C 1.41316 * 119.78778 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99697 * 359.97438 * 13 12 11 15 15 C 1.40026 * 119.99906 * 179.97438 * 13 12 11 16 16 N 1.30740 * 120.00312 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99593 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47264 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46798 * 120.00373 * 17 15 13 20 20 H 1.48505 * 109.47212 * 240.00102 * 17 15 13 21 21 N 1.31955 * 119.58557 * 180.02562 * 8 7 6 22 22 C 1.38237 * 119.99834 * 0.28457 * 5 4 3 23 23 C 1.38235 * 120.00111 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.47046 * 90.00530 * 1 2 3 25 25 H 1.09000 * 109.46744 * 209.99698 * 1 2 3 26 26 H 1.08993 * 109.47304 * 330.00090 * 1 2 3 27 27 H 1.08004 * 119.99741 * 359.97438 * 3 2 1 28 28 H 1.08000 * 120.00220 * 179.97438 * 4 3 2 29 29 H 1.09004 * 109.47210 * 330.00623 * 6 5 4 30 30 H 1.08994 * 109.47121 * 210.00593 * 6 5 4 31 31 H 0.97001 * 120.00384 * 0.02562 * 7 6 5 32 32 H 1.07998 * 120.25142 * 359.95312 * 9 8 7 33 33 H 1.08002 * 120.65631 * 180.02562 * 10 9 8 34 34 H 1.07998 * 120.42591 * 179.97438 * 11 10 9 35 35 H 0.96995 * 120.00059 * 179.97438 * 16 15 13 36 36 H 1.08000 * 119.99739 * 179.72353 * 22 5 4 37 37 H 1.08000 * 120.00082 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0001 0.0000 6 6 5.7787 0.0001 0.0000 7 7 6.2670 0.0006 1.3812 8 6 7.6318 -0.0050 1.6350 9 6 8.5326 -0.0053 0.5658 10 6 9.8948 -0.0105 0.8214 11 6 10.3237 -0.0146 2.1370 12 6 9.3688 -0.0141 3.1685 13 6 9.7919 -0.0178 4.5168 14 1 10.8460 -0.0214 4.7520 15 6 8.8444 -0.0167 5.5479 16 7 7.5684 -0.0128 5.2632 17 14 9.4037 -0.0224 7.3302 18 1 10.8878 -0.0269 7.3833 19 1 8.8880 1.1905 8.0146 20 1 8.8800 -1.2346 8.0096 21 7 8.0626 -0.0050 2.8822 22 6 3.5806 -1.1971 -0.0049 23 6 2.1982 -1.1971 0.0005 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5138 27 1 1.6581 2.1325 -0.0004 28 1 4.1205 2.1326 -0.0010 29 1 6.1421 0.8899 -0.5142 30 1 6.1420 -0.8900 -0.5135 31 1 5.6366 0.0006 2.1185 32 1 8.1697 -0.0019 -0.4514 33 1 10.6074 -0.0103 0.0098 34 1 11.3786 -0.0191 2.3684 35 1 6.9121 -0.0125 5.9774 36 1 4.1206 -2.1323 -0.0090 37 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764388256.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:30 Heat of formation + Delta-G solvation = 38.739615 kcal Electronic energy + Delta-G solvation = -18856.438689 eV Core-core repulsion = 15983.297894 eV Total energy + Delta-G solvation = -2873.140795 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.56506 -39.92972 -36.88496 -35.25779 -33.72456 -32.26299 -31.85131 -30.89731 -28.59146 -27.24512 -25.32918 -23.63700 -23.37047 -22.32887 -21.57493 -19.27258 -18.26031 -17.07073 -16.53551 -16.50275 -16.40021 -16.00045 -15.77898 -15.06529 -14.85534 -14.63577 -14.49811 -14.31451 -13.82382 -13.68172 -13.33793 -12.98174 -12.84452 -12.80540 -12.72384 -12.58033 -12.21321 -11.92255 -11.87427 -11.71688 -11.31190 -10.67983 -9.85653 -9.83632 -9.53571 -9.43729 -8.30725 -8.22757 -6.48217 0.29853 0.47916 1.05409 1.34462 1.41358 1.56910 1.57241 2.25144 2.54926 2.92580 3.06141 3.74687 3.88358 4.05404 4.07596 4.12512 4.31565 4.38125 4.52620 4.61682 4.68475 4.79239 4.85556 4.85795 4.94918 4.99024 5.00725 5.11388 5.17552 5.27395 5.35915 5.47252 5.67289 5.69258 5.71453 5.96390 6.06008 6.09607 6.22943 6.54711 6.83056 6.92848 7.21153 8.34329 8.51542 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.020709 B = 0.004274 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.767421 B = 6549.587822 C = 7591.561832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.088 4.088 3 C -0.130 4.130 4 C -0.107 4.107 5 C -0.117 4.117 6 C 0.184 3.816 7 N -0.729 5.729 8 C 0.394 3.606 9 C -0.367 4.367 10 C -0.029 4.029 11 C -0.344 4.344 12 C 0.258 3.742 13 C -0.471 4.471 14 H 0.087 0.913 15 C 0.026 3.974 16 N -0.754 5.754 17 Si 0.987 3.013 18 H -0.254 1.254 19 H -0.267 1.267 20 H -0.267 1.267 21 N -0.566 5.566 22 C -0.107 4.107 23 C -0.130 4.130 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.142 0.858 28 H 0.124 0.876 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.390 0.610 32 H 0.118 0.882 33 H 0.131 0.869 34 H 0.103 0.897 35 H 0.275 0.725 36 H 0.124 0.876 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.131 0.012 -8.585 15.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.088 4.088 3 C -0.148 4.148 4 C -0.126 4.126 5 C -0.118 4.118 6 C 0.060 3.940 7 N -0.364 5.364 8 C 0.153 3.847 9 C -0.393 4.393 10 C -0.053 4.053 11 C -0.367 4.367 12 C 0.131 3.869 13 C -0.503 4.503 14 H 0.105 0.895 15 C -0.196 4.196 16 N -0.376 5.376 17 Si 0.807 3.193 18 H -0.178 1.178 19 H -0.192 1.192 20 H -0.192 1.192 21 N -0.289 5.289 22 C -0.126 4.126 23 C -0.148 4.148 24 H 0.101 0.899 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.160 0.840 28 H 0.142 0.858 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.224 0.776 32 H 0.136 0.864 33 H 0.148 0.852 34 H 0.121 0.879 35 H 0.086 0.914 36 H 0.142 0.858 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.909 0.021 -8.062 16.077 hybrid contribution 0.901 -0.010 0.287 0.945 sum -13.009 0.012 -7.775 15.155 Atomic orbital electron populations 1.20847 0.89026 1.03678 1.03306 1.20344 0.97732 0.92822 0.97900 1.21298 0.93602 0.98804 1.01079 1.21235 0.95011 0.97509 0.98822 1.19861 0.94317 0.94304 1.03269 1.20049 0.89704 1.01351 0.82856 1.44352 1.02332 1.82856 1.06847 1.18984 0.85663 0.89548 0.90494 1.20954 0.93533 1.27333 0.97495 1.21014 0.95128 0.93443 0.95757 1.21703 0.98813 1.22182 0.93977 1.18702 0.86738 0.87290 0.94158 1.19972 0.94857 1.45241 0.90232 0.89494 1.26977 0.94426 0.92482 1.05709 1.70265 1.02374 1.29882 1.35059 0.85104 0.79858 0.78690 0.75657 1.17770 1.19174 1.19161 1.68185 1.16973 1.26527 1.17228 1.21238 0.95013 0.97503 0.98832 1.21300 0.93601 0.98806 1.01080 0.89876 0.90694 0.90692 0.84037 0.85805 0.91957 0.91973 0.77586 0.86385 0.85166 0.87863 0.91422 0.85811 0.84040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 10.01 71.24 0.71 -0.78 16 2 C -0.09 -1.77 5.88 -19.87 -0.12 -1.89 16 3 C -0.13 -2.82 9.70 22.27 0.22 -2.61 16 4 C -0.11 -2.77 9.70 22.27 0.22 -2.55 16 5 C -0.12 -3.31 5.25 -19.86 -0.10 -3.41 16 6 C 0.18 5.99 5.01 85.63 0.43 6.42 16 7 N -0.73 -30.75 5.71 -348.71 -1.99 -32.74 16 8 C 0.39 19.99 7.65 133.42 1.02 21.01 16 9 C -0.37 -17.04 9.34 22.73 0.21 -16.83 16 10 C -0.03 -1.36 10.15 22.39 0.23 -1.13 16 11 C -0.34 -18.01 9.83 22.87 0.22 -17.79 16 12 C 0.26 15.15 6.55 40.18 0.26 15.41 16 13 C -0.47 -26.78 9.14 23.46 0.21 -26.57 16 14 H 0.09 4.64 7.85 -2.91 -0.02 4.62 16 15 C 0.03 1.35 5.50 85.29 0.47 1.82 16 16 N -0.75 -42.00 11.46 21.84 0.25 -41.75 16 17 Si 0.99 39.48 29.56 68.60 2.03 41.51 16 18 H -0.25 -9.78 7.11 99.48 0.71 -9.08 16 19 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 20 H -0.27 -10.25 7.11 99.48 0.71 -9.55 16 21 N -0.57 -33.03 7.89 -186.57 -1.47 -34.50 16 22 C -0.11 -2.77 9.70 22.27 0.22 -2.56 16 23 C -0.13 -2.83 9.70 22.27 0.22 -2.61 16 24 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.07 0.88 8.09 -2.39 -0.02 0.86 16 26 H 0.07 0.88 8.08 -2.39 -0.02 0.86 16 27 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 28 H 0.12 3.08 8.06 -2.91 -0.02 3.05 16 29 H 0.06 1.97 7.87 -2.38 -0.02 1.95 16 30 H 0.06 1.96 7.86 -2.39 -0.02 1.95 16 31 H 0.39 17.16 8.58 -92.71 -0.80 16.36 16 32 H 0.12 4.70 6.68 -2.91 -0.02 4.69 16 33 H 0.13 4.94 8.06 -2.91 -0.02 4.91 16 34 H 0.10 5.03 8.06 -2.91 -0.02 5.01 16 35 H 0.28 13.85 8.29 -92.71 -0.77 13.08 16 36 H 0.12 3.08 8.06 -2.91 -0.02 3.05 16 37 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -67.22 318.83 3.51 -63.71 By element: Atomic # 1 Polarization: 37.55 SS G_CDS: 0.28 Total: 37.82 kcal Atomic # 6 Polarization: -38.47 SS G_CDS: 4.42 Total: -34.05 kcal Atomic # 7 Polarization: -105.78 SS G_CDS: -3.21 Total: -108.99 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.51 kcal Total: -67.22 3.51 -63.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764388256.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.452 kcal (2) G-P(sol) polarization free energy of solvation -67.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds