Wall clock time and date at job start Mon Mar 30 2020 07:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99639 * 2 1 4 4 H 1.48498 * 109.47049 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47351 * 119.99660 * 3 2 1 6 6 H 1.48504 * 109.46872 * 239.99966 * 3 2 1 7 7 C 1.38805 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00304 * 200.08391 * 7 2 1 9 9 N 1.36937 * 119.99923 * 20.08790 * 7 2 1 10 10 C 1.46497 * 120.00261 * 38.07663 * 9 7 2 11 11 C 1.50694 * 109.47103 * 90.00260 * 10 9 7 12 12 C 1.36210 * 120.66581 * 259.99742 * 11 10 9 13 13 N 1.32583 * 121.87345 * 179.97438 * 12 11 10 14 14 C 1.31265 * 122.77807 * 0.02762 * 13 12 11 15 15 C 1.40392 * 119.88138 * 359.97438 * 14 13 12 16 16 C 1.40384 * 122.08133 * 179.97438 * 15 14 13 17 17 C 1.36178 * 119.51300 * 179.22799 * 16 15 14 18 18 C 1.39378 * 121.08659 * 0.72639 * 17 16 15 19 19 C 1.36220 * 121.02653 * 359.52979 * 18 17 16 20 20 C 1.40238 * 119.47633 * 359.97276 * 19 18 17 21 21 C 1.46505 * 119.99785 * 218.08061 * 9 7 2 22 22 C 1.52996 * 117.49852 * 2.92367 * 21 9 7 23 23 C 1.53004 * 60.00258 * 252.51329 * 22 21 9 24 24 H 0.96992 * 120.00572 * 354.79492 * 1 2 3 25 25 H 1.09000 * 109.47027 * 210.00658 * 10 9 7 26 26 H 1.08998 * 109.47371 * 330.00084 * 10 9 7 27 27 H 1.07997 * 119.06101 * 359.97438 * 12 11 10 28 28 H 1.07996 * 120.05909 * 180.02562 * 14 13 12 29 29 H 1.08000 * 120.24213 * 359.97438 * 16 15 14 30 30 H 1.08001 * 119.45435 * 180.23317 * 17 16 15 31 31 H 1.08002 * 119.48580 * 179.50716 * 18 17 16 32 32 H 1.07993 * 120.25810 * 179.97438 * 19 18 17 33 33 H 1.08994 * 115.55136 * 148.63629 * 21 9 7 34 34 H 1.08996 * 117.49945 * 359.97438 * 22 21 9 35 35 H 1.08997 * 117.50164 * 145.02447 * 22 21 9 36 36 H 1.09001 * 117.49772 * 252.51405 * 23 22 21 37 37 H 1.08997 * 117.49970 * 107.48484 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7464 -0.0006 5 1 3.1038 1.6966 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0411 -1.2303 0.3217 9 7 1.3882 -2.3521 -0.4063 10 6 0.4495 -2.3188 -1.5305 11 6 1.1960 -2.5672 -2.8157 12 6 1.5447 -1.5309 -3.6280 13 7 2.2019 -1.7219 -4.7635 14 6 2.5612 -2.9119 -5.1852 15 6 2.2500 -4.0480 -4.4214 16 6 2.6112 -5.3421 -4.8285 17 6 2.2965 -6.4061 -4.0390 18 6 1.6080 -6.2335 -2.8395 19 6 1.2367 -4.9934 -2.4152 20 6 1.5528 -3.8731 -3.1973 21 6 1.6612 -3.6158 0.2829 22 6 2.5977 -3.5730 1.4920 23 6 3.0763 -4.1877 0.1751 24 1 -0.4850 0.8365 0.0762 25 1 -0.3075 -3.0914 -1.3948 26 1 -0.0321 -1.3419 -1.5730 27 1 1.2782 -0.5251 -3.3388 28 1 3.0959 -3.0168 -6.1176 29 1 3.1454 -5.4915 -5.7551 30 1 2.5783 -7.4008 -4.3513 31 1 1.3647 -7.0963 -2.2373 32 1 0.7032 -4.8740 -1.4839 33 1 0.8331 -4.3238 0.3121 34 1 3.0110 -2.6048 1.7745 35 1 2.3858 -4.2529 2.3171 36 1 3.1790 -5.2721 0.1339 37 1 3.8039 -3.6238 -0.4085 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769100936.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:14 Heat of formation + Delta-G solvation = 103.779151 kcal Electronic energy + Delta-G solvation = -20450.218823 eV Core-core repulsion = 17579.898354 eV Total energy + Delta-G solvation = -2870.320469 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.36275 -37.18267 -36.85378 -34.08582 -32.60825 -30.79757 -30.28678 -29.10819 -25.95665 -24.12371 -23.02944 -22.93135 -21.43386 -20.85428 -19.77460 -17.47917 -17.03513 -16.38865 -15.98293 -15.39438 -14.53561 -14.35560 -14.03331 -13.94600 -13.75659 -13.25458 -13.00493 -12.69477 -12.20817 -11.95374 -11.67495 -11.47591 -11.21385 -11.04606 -10.88462 -10.70201 -10.58789 -10.21600 -10.13605 -9.70040 -9.59447 -9.23862 -8.89857 -8.63405 -8.55029 -7.48204 -6.62797 -5.96822 -3.51411 0.86285 1.37825 2.41859 3.30024 3.36223 3.40439 3.51899 4.32627 4.58118 4.85601 4.91134 5.01364 5.12595 5.20860 5.23683 5.25516 5.36348 5.55909 5.63618 5.77132 5.86976 6.01081 6.09695 6.11670 6.16900 6.31726 6.41751 6.46880 6.52178 6.56647 6.62561 6.73654 6.91112 7.04373 7.06782 7.16307 7.30261 7.48720 7.70457 8.36683 8.57728 9.00374 9.61995 10.18567 11.04860 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.019181 B = 0.007990 C = 0.006333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.400755 B = 3503.476696 C = 4420.548860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.020 3.980 3 Si 0.898 3.102 4 H -0.287 1.287 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.261 4.261 8 H 0.062 0.938 9 N -0.539 5.539 10 C 0.180 3.820 11 C -0.097 4.097 12 C 0.071 3.929 13 N -0.481 5.481 14 C 0.105 3.895 15 C -0.110 4.110 16 C -0.101 4.101 17 C -0.123 4.123 18 C -0.123 4.123 19 C -0.084 4.084 20 C -0.019 4.019 21 C 0.125 3.875 22 C -0.188 4.188 23 C -0.221 4.221 24 H 0.261 0.739 25 H 0.040 0.960 26 H 0.111 0.889 27 H 0.148 0.852 28 H 0.150 0.850 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.133 0.867 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.986 -10.431 -5.997 12.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.181 4.181 3 Si 0.727 3.273 4 H -0.213 1.213 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.390 4.390 8 H 0.080 0.920 9 N -0.254 5.254 10 C 0.054 3.946 11 C -0.102 4.102 12 C -0.073 4.073 13 N -0.188 5.188 14 C -0.067 4.067 15 C -0.112 4.112 16 C -0.121 4.121 17 C -0.141 4.141 18 C -0.143 4.143 19 C -0.102 4.102 20 C -0.024 4.024 21 C 0.016 3.984 22 C -0.226 4.226 23 C -0.262 4.262 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.129 0.871 27 H 0.166 0.834 28 H 0.168 0.832 29 H 0.141 0.859 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.150 0.850 33 H 0.102 0.898 34 H 0.118 0.882 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.946 -9.394 -6.407 11.536 hybrid contribution 0.543 0.062 0.584 0.800 sum 2.489 -9.333 -5.823 11.278 Atomic orbital electron populations 1.69847 1.05570 1.26650 1.50487 1.25208 0.95119 0.98736 0.99046 0.86437 0.79343 0.82892 0.78668 1.21287 1.20545 1.20418 1.18910 0.94132 0.84698 1.41255 0.92039 1.43257 1.50468 1.02682 1.29002 1.20009 0.89973 1.03727 0.80937 1.22029 0.98653 0.91711 0.97786 1.22034 0.96093 0.99614 0.89596 1.67320 1.10068 1.25662 1.15788 1.22869 0.98020 0.87123 0.98718 1.19017 1.00803 0.95192 0.96162 1.20838 1.00069 0.91558 0.99630 1.20772 0.99617 0.98565 0.95168 1.20834 0.99464 0.97288 0.96668 1.21192 0.98468 0.91516 0.99045 1.18157 0.96607 0.94215 0.93443 1.21113 0.90010 0.90537 0.96716 1.23057 1.06197 1.02238 0.91103 1.23372 1.03004 0.98243 1.01575 0.92908 0.94145 0.87126 0.83418 0.83227 0.85906 0.86534 0.86422 0.84953 0.89827 0.88226 0.90529 0.90868 0.90038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.85 11.42 55.49 0.63 -23.21 16 2 C 0.02 0.53 4.98 -17.43 -0.09 0.44 16 3 Si 0.90 20.98 29.60 -169.99 -5.03 15.95 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.26 -6.76 8.38 -15.06 -0.13 -6.88 16 8 H 0.06 1.64 6.93 -52.49 -0.36 1.27 16 9 N -0.54 -12.63 2.74 -167.03 -0.46 -13.09 16 10 C 0.18 4.00 5.00 -5.20 -0.03 3.98 16 11 C -0.10 -2.01 5.48 -104.44 -0.57 -2.58 16 12 C 0.07 1.51 10.72 -17.96 -0.19 1.31 16 13 N -0.48 -9.51 10.30 -13.16 -0.14 -9.65 16 14 C 0.10 1.77 11.05 -16.98 -0.19 1.58 16 15 C -0.11 -1.85 5.74 -106.86 -0.61 -2.46 16 16 C -0.10 -1.37 9.81 -39.51 -0.39 -1.76 16 17 C -0.12 -1.56 9.94 -39.90 -0.40 -1.96 16 18 C -0.12 -1.69 9.95 -39.88 -0.40 -2.09 16 19 C -0.08 -1.39 8.10 -39.56 -0.32 -1.71 16 20 C -0.02 -0.35 5.75 -106.82 -0.61 -0.96 16 21 C 0.13 2.54 4.70 -67.93 -0.32 2.22 16 22 C -0.19 -3.62 9.78 -26.73 -0.26 -3.88 16 23 C -0.22 -4.15 9.90 -26.73 -0.26 -4.41 16 24 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 25 H 0.04 0.84 7.06 -51.93 -0.37 0.48 16 26 H 0.11 2.75 5.36 -51.93 -0.28 2.47 16 27 H 0.15 3.21 8.01 -52.49 -0.42 2.79 16 28 H 0.15 1.96 8.06 -52.49 -0.42 1.54 16 29 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 30 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.13 2.20 4.34 -52.49 -0.23 1.97 16 33 H 0.08 1.57 6.97 -51.93 -0.36 1.20 16 34 H 0.10 2.13 6.57 -51.93 -0.34 1.78 16 35 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 LS Contribution 304.89 15.07 4.59 4.59 Total: -1.00 -28.14 304.89 -9.62 -37.76 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -4.46 Total: 6.82 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -4.77 Total: -19.18 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 0.04 Total: -45.94 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.14 -9.62 -37.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769100936.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.542 kcal (2) G-P(sol) polarization free energy of solvation -28.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds