Wall clock time and date at job start Mon Mar 30 2020 07:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99639 * 2 1 4 4 H 1.48498 * 109.47049 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47351 * 119.99660 * 3 2 1 6 6 H 1.48504 * 109.46872 * 239.99966 * 3 2 1 7 7 C 1.38805 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00304 * 200.08391 * 7 2 1 9 9 N 1.36937 * 119.99923 * 20.08790 * 7 2 1 10 10 C 1.46497 * 120.00261 * 38.07663 * 9 7 2 11 11 C 1.50694 * 109.47103 * 90.00260 * 10 9 7 12 12 C 1.36210 * 120.66581 * 259.99742 * 11 10 9 13 13 N 1.32583 * 121.87345 * 179.97438 * 12 11 10 14 14 C 1.31265 * 122.77807 * 0.02762 * 13 12 11 15 15 C 1.40392 * 119.88138 * 359.97438 * 14 13 12 16 16 C 1.40384 * 122.08133 * 179.97438 * 15 14 13 17 17 C 1.36178 * 119.51300 * 179.22799 * 16 15 14 18 18 C 1.39378 * 121.08659 * 0.72639 * 17 16 15 19 19 C 1.36220 * 121.02653 * 359.52979 * 18 17 16 20 20 C 1.40238 * 119.47633 * 359.97276 * 19 18 17 21 21 C 1.46505 * 119.99785 * 218.08061 * 9 7 2 22 22 C 1.52996 * 117.49852 * 2.92367 * 21 9 7 23 23 C 1.53004 * 60.00258 * 252.51329 * 22 21 9 24 24 H 0.96992 * 120.00572 * 354.79492 * 1 2 3 25 25 H 1.09000 * 109.47027 * 210.00658 * 10 9 7 26 26 H 1.08998 * 109.47371 * 330.00084 * 10 9 7 27 27 H 1.07997 * 119.06101 * 359.97438 * 12 11 10 28 28 H 1.07996 * 120.05909 * 180.02562 * 14 13 12 29 29 H 1.08000 * 120.24213 * 359.97438 * 16 15 14 30 30 H 1.08001 * 119.45435 * 180.23317 * 17 16 15 31 31 H 1.08002 * 119.48580 * 179.50716 * 18 17 16 32 32 H 1.07993 * 120.25810 * 179.97438 * 19 18 17 33 33 H 1.08994 * 115.55136 * 148.63629 * 21 9 7 34 34 H 1.08996 * 117.49945 * 359.97438 * 22 21 9 35 35 H 1.08997 * 117.50164 * 145.02447 * 22 21 9 36 36 H 1.09001 * 117.49772 * 252.51405 * 23 22 21 37 37 H 1.08997 * 117.49970 * 107.48484 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7464 -0.0006 5 1 3.1038 1.6966 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0411 -1.2303 0.3217 9 7 1.3882 -2.3521 -0.4063 10 6 0.4495 -2.3188 -1.5305 11 6 1.1960 -2.5672 -2.8157 12 6 1.5447 -1.5309 -3.6280 13 7 2.2019 -1.7219 -4.7635 14 6 2.5612 -2.9119 -5.1852 15 6 2.2500 -4.0480 -4.4214 16 6 2.6112 -5.3421 -4.8285 17 6 2.2965 -6.4061 -4.0390 18 6 1.6080 -6.2335 -2.8395 19 6 1.2367 -4.9934 -2.4152 20 6 1.5528 -3.8731 -3.1973 21 6 1.6612 -3.6158 0.2829 22 6 2.5977 -3.5730 1.4920 23 6 3.0763 -4.1877 0.1751 24 1 -0.4850 0.8365 0.0762 25 1 -0.3075 -3.0914 -1.3948 26 1 -0.0321 -1.3419 -1.5730 27 1 1.2782 -0.5251 -3.3388 28 1 3.0959 -3.0168 -6.1176 29 1 3.1454 -5.4915 -5.7551 30 1 2.5783 -7.4008 -4.3513 31 1 1.3647 -7.0963 -2.2373 32 1 0.7032 -4.8740 -1.4839 33 1 0.8331 -4.3238 0.3121 34 1 3.0110 -2.6048 1.7745 35 1 2.3858 -4.2529 2.3171 36 1 3.1790 -5.2721 0.1339 37 1 3.8039 -3.6238 -0.4085 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769100936.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:13 Heat of formation + Delta-G solvation = 89.417175 kcal Electronic energy + Delta-G solvation = -20450.841605 eV Core-core repulsion = 17579.898354 eV Total energy + Delta-G solvation = -2870.943251 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.69364 -38.81831 -38.11486 -35.71198 -34.25955 -32.20858 -31.78971 -30.48579 -27.72825 -25.73933 -24.39152 -24.24505 -22.97537 -22.30418 -21.42814 -18.75028 -18.45709 -18.10222 -17.52779 -16.90393 -16.29592 -15.72649 -15.60092 -15.33158 -15.16760 -14.64392 -14.47741 -14.17945 -13.63220 -13.48001 -13.10449 -12.92753 -12.87188 -12.77542 -12.59213 -12.25882 -12.22365 -11.94916 -11.75430 -11.35918 -11.04753 -10.69949 -10.50155 -10.30522 -9.86704 -8.82098 -8.49131 -7.91876 -5.51324 -0.38658 0.09347 1.14042 1.38129 1.43107 1.47968 2.26124 2.41734 3.11311 3.20082 3.39644 3.60050 3.62270 3.79499 3.99029 4.01421 4.15373 4.22748 4.33539 4.39731 4.47411 4.51376 4.58860 4.71875 4.89678 4.91481 4.95884 5.02310 5.16362 5.25387 5.31222 5.35091 5.49069 5.50817 5.60814 5.64978 5.79468 5.87552 6.11142 6.41372 7.07784 7.14390 7.76278 8.27611 9.05182 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.019181 B = 0.007990 C = 0.006333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.400755 B = 3503.476696 C = 4420.548860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.020 4.020 3 Si 0.946 3.054 4 H -0.286 1.286 5 H -0.274 1.274 6 H -0.287 1.287 7 C -0.262 4.262 8 H 0.047 0.953 9 N -0.554 5.554 10 C 0.190 3.810 11 C -0.114 4.114 12 C 0.049 3.951 13 N -0.511 5.511 14 C 0.119 3.881 15 C -0.127 4.127 16 C -0.093 4.093 17 C -0.116 4.116 18 C -0.103 4.103 19 C -0.112 4.112 20 C -0.035 4.035 21 C 0.108 3.892 22 C -0.188 4.188 23 C -0.196 4.196 24 H 0.257 0.743 25 H 0.045 0.955 26 H 0.077 0.923 27 H 0.120 0.880 28 H 0.193 0.807 29 H 0.163 0.837 30 H 0.160 0.840 31 H 0.151 0.849 32 H 0.124 0.876 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.389 -14.339 -7.321 16.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.218 4.218 3 Si 0.774 3.226 4 H -0.211 1.211 5 H -0.200 1.200 6 H -0.213 1.213 7 C -0.392 4.392 8 H 0.065 0.935 9 N -0.270 5.270 10 C 0.064 3.936 11 C -0.119 4.119 12 C -0.094 4.094 13 N -0.219 5.219 14 C -0.054 4.054 15 C -0.129 4.129 16 C -0.113 4.113 17 C -0.134 4.134 18 C -0.122 4.122 19 C -0.130 4.130 20 C -0.041 4.041 21 C 0.000 4.000 22 C -0.226 4.226 23 C -0.236 4.236 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.095 0.905 27 H 0.138 0.862 28 H 0.210 0.790 29 H 0.180 0.820 30 H 0.178 0.822 31 H 0.168 0.832 32 H 0.142 0.858 33 H 0.120 0.880 34 H 0.090 0.910 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.353 -13.311 -7.725 15.751 hybrid contribution 0.165 1.013 0.857 1.337 sum 3.518 -12.298 -6.868 14.518 Atomic orbital electron populations 1.69948 1.06414 1.26672 1.52261 1.25693 0.95679 1.00822 0.99640 0.85681 0.78277 0.80443 0.78178 1.21122 1.19972 1.21332 1.18922 0.93566 0.86088 1.40666 0.93522 1.43336 1.50390 1.03123 1.30193 1.19705 0.90079 1.01896 0.81932 1.21770 0.99490 0.93208 0.97409 1.21739 0.97884 0.98720 0.91093 1.67300 1.11598 1.27526 1.15480 1.23639 0.95976 0.86264 0.99493 1.19343 1.01041 0.96976 0.95583 1.21284 0.99102 0.89865 1.01035 1.21301 0.97736 1.00355 0.93998 1.21300 0.96959 0.96947 0.96984 1.21178 1.00415 0.92180 0.99221 1.18340 0.97265 0.93625 0.94848 1.21327 0.91377 0.89848 0.97422 1.23086 1.05652 1.01766 0.92137 1.23219 1.00715 0.99505 1.00199 0.93368 0.93637 0.90526 0.86205 0.79024 0.81983 0.82200 0.83159 0.85836 0.87969 0.91008 0.87426 0.87572 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.82 11.42 21.65 0.25 -51.57 16 2 C -0.02 -1.09 4.98 84.86 0.42 -0.67 16 3 Si 0.95 45.25 29.60 68.60 2.03 47.28 16 4 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 5 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 7 C -0.26 -14.27 8.38 84.03 0.70 -13.57 16 8 H 0.05 2.63 6.93 -2.91 -0.02 2.61 16 9 N -0.55 -26.99 2.74 -682.36 -1.87 -28.86 16 10 C 0.19 8.97 5.00 85.63 0.43 9.39 16 11 C -0.11 -4.95 5.48 -19.75 -0.11 -5.06 16 12 C 0.05 2.19 10.72 84.11 0.90 3.10 16 13 N -0.51 -20.61 10.30 -195.54 -2.01 -22.62 16 14 C 0.12 3.79 11.05 85.30 0.94 4.73 16 15 C -0.13 -3.97 5.74 -21.31 -0.12 -4.10 16 16 C -0.09 -2.03 9.81 22.31 0.22 -1.81 16 17 C -0.12 -2.23 9.94 22.06 0.22 -2.01 16 18 C -0.10 -2.32 9.95 22.07 0.22 -2.10 16 19 C -0.11 -3.46 8.10 22.29 0.18 -3.28 16 20 C -0.04 -1.30 5.75 -21.29 -0.12 -1.42 16 21 C 0.11 4.37 4.70 44.99 0.21 4.58 16 22 C -0.19 -7.14 9.78 30.59 0.30 -6.84 16 23 C -0.20 -7.07 9.90 30.60 0.30 -6.77 16 24 H 0.26 14.19 8.32 -92.71 -0.77 13.42 16 25 H 0.05 2.01 7.06 -2.39 -0.02 1.99 16 26 H 0.08 4.14 5.36 -2.39 -0.01 4.12 16 27 H 0.12 5.83 8.01 -2.91 -0.02 5.81 16 28 H 0.19 4.27 8.06 -2.91 -0.02 4.24 16 29 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 30 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 31 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 32 H 0.12 3.96 4.34 -2.91 -0.01 3.95 16 33 H 0.10 3.72 6.97 -2.39 -0.02 3.70 16 34 H 0.07 3.13 6.57 -2.39 -0.02 3.12 16 35 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 36 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 37 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -65.71 304.89 4.17 -61.54 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 1.08 Total: 20.06 kcal Atomic # 6 Polarization: -30.53 SS G_CDS: 4.70 Total: -25.83 kcal Atomic # 7 Polarization: -99.41 SS G_CDS: -3.64 Total: -103.05 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -65.71 4.17 -61.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769100936.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.959 kcal (2) G-P(sol) polarization free energy of solvation -65.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds