Wall clock time and date at job start Mon Mar 30 2020 07:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29744 * 119.99922 * 2 1 4 4 N 1.40095 * 119.99900 * 0.02562 * 3 2 1 5 5 C 1.46506 * 120.00189 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.46578 * 329.99503 * 5 4 3 7 7 C 1.52998 * 109.47320 * 89.99312 * 5 4 3 8 8 C 1.50693 * 109.47188 * 210.00068 * 5 4 3 9 9 H 1.08002 * 120.00562 * 359.97438 * 8 5 4 10 10 C 1.37882 * 120.00041 * 179.97438 * 8 5 4 11 11 N 1.31512 * 119.99626 * 359.97438 * 10 8 5 12 12 Si 1.86801 * 120.00131 * 179.97438 * 10 8 5 13 13 H 1.48506 * 109.46809 * 90.00078 * 12 10 8 14 14 H 1.48495 * 109.47103 * 209.99957 * 12 10 8 15 15 H 1.48500 * 109.47114 * 330.00647 * 12 10 8 16 16 C 1.47499 * 120.00118 * 180.02562 * 2 1 3 17 17 C 1.39694 * 120.11879 * 179.97438 * 16 2 1 18 18 C 1.37913 * 119.91282 * 179.97438 * 17 16 2 19 19 C 1.38546 * 120.15573 * 0.02562 * 18 17 16 20 20 F 1.35096 * 119.87886 * 179.97438 * 19 18 17 21 21 C 1.38776 * 120.24215 * 359.97438 * 19 18 17 22 22 F 1.35098 * 119.95785 * 179.97438 * 21 19 18 23 23 C 1.38119 * 120.08868 * 359.71842 * 21 19 18 24 24 H 1.08999 * 109.47280 * 89.99742 * 1 2 3 25 25 H 1.08997 * 109.47027 * 209.99702 * 1 2 3 26 26 H 1.09000 * 109.47497 * 329.99936 * 1 2 3 27 27 H 0.96999 * 120.00122 * 359.97438 * 4 3 2 28 28 H 1.09004 * 109.46895 * 60.00075 * 7 5 4 29 29 H 1.09002 * 109.47177 * 180.02562 * 7 5 4 30 30 H 1.08997 * 109.47106 * 300.00561 * 7 5 4 31 31 H 0.97006 * 119.99899 * 179.97438 * 11 10 8 32 32 H 1.08006 * 120.04841 * 0.02623 * 17 16 2 33 33 H 1.08002 * 119.92289 * 179.97438 * 18 17 16 34 34 H 1.07996 * 120.08465 * 180.27420 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1556 1.1236 0.0000 4 7 1.4551 2.3369 0.0005 5 6 2.1876 3.6057 0.0011 6 1 3.1399 3.4751 0.5150 7 6 2.4427 4.0480 -1.4412 8 6 1.3731 4.6555 0.7120 9 1 0.4064 4.4032 1.1220 10 6 1.8621 5.9385 0.8390 11 7 3.0395 6.2457 0.3402 12 14 0.8522 7.2401 1.7195 13 1 1.1900 7.2342 3.1656 14 1 1.1570 8.5752 1.1455 15 1 -0.5931 6.9454 1.5477 16 6 2.2445 -1.2774 -0.0006 17 6 3.6414 -1.2802 -0.0011 18 6 4.3267 -2.4770 -0.0011 19 6 3.6329 -3.6763 -0.0011 20 9 4.3099 -4.8454 -0.0016 21 6 2.2452 -3.6810 -0.0006 22 9 1.5745 -4.8537 -0.0011 23 6 1.5487 -2.4883 0.0058 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 0.4851 2.3369 0.0005 28 1 1.4903 4.1785 -1.9550 29 1 2.9881 4.9918 -1.4407 30 1 3.0318 3.2885 -1.9552 31 1 3.3835 7.1484 0.4292 32 1 4.1841 -0.3464 -0.0007 33 1 5.4067 -2.4794 -0.0019 34 1 0.4688 -2.4920 0.0107 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771888172.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:42 Heat of formation + Delta-G solvation = -29.247015 kcal Electronic energy + Delta-G solvation = -19281.400460 eV Core-core repulsion = 15851.082013 eV Total energy + Delta-G solvation = -3430.318446 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.108 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.46401 -48.53903 -39.13051 -36.88465 -34.47411 -32.16338 -31.00719 -30.00381 -28.47282 -26.85467 -25.29330 -23.37011 -22.85549 -20.67200 -19.39614 -18.03607 -17.49003 -16.92015 -16.32951 -16.29960 -15.32141 -15.11151 -14.96638 -14.70278 -14.38506 -14.14635 -13.97994 -13.50975 -12.89515 -12.60813 -12.40788 -12.18380 -12.11233 -11.67424 -11.40533 -11.33963 -11.09558 -10.90121 -10.53470 -10.31593 -10.26478 -9.66515 -9.18708 -9.09251 -8.78865 -8.56548 -6.92562 -6.22171 -4.31079 0.71278 1.00449 2.63091 3.19139 3.25805 3.27463 3.54306 3.66714 3.81869 4.27427 4.35435 4.56921 4.68113 4.98005 5.10753 5.11097 5.39463 5.52255 5.63965 5.74306 5.82383 5.85262 6.08479 6.16833 6.43586 6.62594 6.75350 6.87003 6.89746 7.04087 7.47284 7.66411 7.74466 8.02505 8.17226 8.75025 9.12658 9.36157 10.83682 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.039356 B = 0.003460 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.288400 B = 8091.309241 C = 8469.871865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.001 4.001 3 N -0.181 5.181 4 N -0.610 5.610 5 C 0.294 3.706 6 H 0.044 0.956 7 C -0.150 4.150 8 C -0.533 4.533 9 H 0.060 0.940 10 C 0.068 3.932 11 N -0.885 5.885 12 Si 0.903 3.097 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.274 1.274 16 C 0.029 3.971 17 C -0.084 4.084 18 C -0.121 4.121 19 C 0.049 3.951 20 F -0.135 7.135 21 C 0.070 3.930 22 F -0.133 7.133 23 C -0.129 4.129 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.373 0.627 28 H 0.026 0.974 29 H 0.091 0.909 30 H 0.013 0.987 31 H 0.265 0.735 32 H 0.150 0.850 33 H 0.145 0.855 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.392 -15.001 -1.333 15.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.187 4.187 3 N 0.004 4.996 4 N -0.348 5.348 5 C 0.192 3.808 6 H 0.061 0.939 7 C -0.210 4.210 8 C -0.573 4.573 9 H 0.078 0.922 10 C -0.135 4.135 11 N -0.522 5.522 12 Si 0.731 3.269 13 H -0.205 1.205 14 H -0.210 1.210 15 H -0.198 1.198 16 C 0.026 3.974 17 C -0.105 4.105 18 C -0.139 4.139 19 C 0.028 3.972 20 F -0.114 7.114 21 C 0.050 3.950 22 F -0.112 7.112 23 C -0.150 4.150 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.211 0.789 28 H 0.046 0.954 29 H 0.110 0.890 30 H 0.032 0.968 31 H 0.075 0.925 32 H 0.168 0.832 33 H 0.163 0.837 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.266 -14.266 -1.354 14.332 hybrid contribution -1.713 0.117 0.438 1.772 sum -1.979 -14.149 -0.916 14.316 Atomic orbital electron populations 1.20982 0.92904 1.02952 1.02381 1.22054 0.92865 0.90483 1.13277 1.74006 1.28606 0.93244 1.03760 1.49210 1.06552 1.00257 1.78746 1.18627 0.92856 0.76127 0.93189 0.93853 1.22204 0.99327 1.01920 0.97505 1.21201 1.04605 0.94436 1.37042 0.92176 1.24851 0.95128 0.98224 0.95307 1.69882 1.17365 1.20478 1.44477 0.86415 0.80242 0.80563 0.79714 1.20474 1.20970 1.19846 1.18102 0.92347 0.90338 0.96631 1.21359 0.93365 0.98283 0.97470 1.21020 1.01160 0.90106 1.01656 1.17730 0.88290 0.82495 1.08690 1.91495 1.79807 1.45814 1.94273 1.17443 0.88308 0.82185 1.07089 1.91507 1.80148 1.45331 1.94201 1.21071 1.01152 0.89414 1.03380 0.91320 0.91157 0.91543 0.78896 0.95441 0.89035 0.96764 0.92458 0.83214 0.83735 0.83489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 9.04 36.00 0.33 -1.36 16 2 C 0.00 -0.01 7.10 -79.70 -0.57 -0.58 16 3 N -0.18 -3.39 10.61 35.11 0.37 -3.01 16 4 N -0.61 -12.60 5.95 -5.88 -0.04 -12.63 16 5 C 0.29 7.11 3.23 -69.08 -0.22 6.89 16 6 H 0.04 1.16 8.14 -51.93 -0.42 0.74 16 7 C -0.15 -3.53 9.29 37.16 0.35 -3.18 16 8 C -0.53 -13.76 8.74 -34.44 -0.30 -14.06 16 9 H 0.06 1.52 7.79 -52.49 -0.41 1.11 16 10 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 11 N -0.88 -23.84 11.32 55.43 0.63 -23.21 16 12 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 13 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 15 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 16 C 0.03 0.38 5.87 -105.05 -0.62 -0.23 16 17 C -0.08 -1.09 9.57 -39.16 -0.37 -1.46 16 18 C -0.12 -1.37 10.01 -39.59 -0.40 -1.77 16 19 C 0.05 0.61 7.31 -39.27 -0.29 0.33 16 20 F -0.14 -1.76 17.17 2.25 0.04 -1.72 16 21 C 0.07 0.87 7.30 -39.43 -0.29 0.59 16 22 F -0.13 -1.72 17.17 2.25 0.04 -1.68 16 23 C -0.13 -1.52 9.34 -39.10 -0.37 -1.89 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.07 0.72 6.46 -51.93 -0.34 0.39 16 26 H 0.07 0.90 6.35 -51.93 -0.33 0.57 16 27 H 0.37 7.13 6.36 -182.60 -1.16 5.97 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 30 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 32 H 0.15 2.00 7.55 -52.48 -0.40 1.60 16 33 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 34 H 0.15 1.44 6.35 -52.49 -0.33 1.11 16 LS Contribution 301.04 15.07 4.54 4.54 Total: -1.00 -26.87 301.04 -6.81 -33.68 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -4.53 Total: 3.98 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: -2.84 Total: -15.05 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.97 Total: -38.86 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.08 Total: -3.40 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -26.87 -6.81 -33.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771888172.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.437 kcal (2) G-P(sol) polarization free energy of solvation -26.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds