Wall clock time and date at job start Mon Mar 30 2020 07:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29744 * 119.99922 * 2 1 4 4 N 1.40095 * 119.99900 * 0.02562 * 3 2 1 5 5 C 1.46506 * 120.00189 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.46578 * 329.99503 * 5 4 3 7 7 C 1.52998 * 109.47320 * 89.99312 * 5 4 3 8 8 C 1.50693 * 109.47188 * 210.00068 * 5 4 3 9 9 H 1.08002 * 120.00562 * 359.97438 * 8 5 4 10 10 C 1.37882 * 120.00041 * 179.97438 * 8 5 4 11 11 N 1.31512 * 119.99626 * 359.97438 * 10 8 5 12 12 Si 1.86801 * 120.00131 * 179.97438 * 10 8 5 13 13 H 1.48506 * 109.46809 * 90.00078 * 12 10 8 14 14 H 1.48495 * 109.47103 * 209.99957 * 12 10 8 15 15 H 1.48500 * 109.47114 * 330.00647 * 12 10 8 16 16 C 1.47499 * 120.00118 * 180.02562 * 2 1 3 17 17 C 1.39694 * 120.11879 * 179.97438 * 16 2 1 18 18 C 1.37913 * 119.91282 * 179.97438 * 17 16 2 19 19 C 1.38546 * 120.15573 * 0.02562 * 18 17 16 20 20 F 1.35096 * 119.87886 * 179.97438 * 19 18 17 21 21 C 1.38776 * 120.24215 * 359.97438 * 19 18 17 22 22 F 1.35098 * 119.95785 * 179.97438 * 21 19 18 23 23 C 1.38119 * 120.08868 * 359.71842 * 21 19 18 24 24 H 1.08999 * 109.47280 * 89.99742 * 1 2 3 25 25 H 1.08997 * 109.47027 * 209.99702 * 1 2 3 26 26 H 1.09000 * 109.47497 * 329.99936 * 1 2 3 27 27 H 0.96999 * 120.00122 * 359.97438 * 4 3 2 28 28 H 1.09004 * 109.46895 * 60.00075 * 7 5 4 29 29 H 1.09002 * 109.47177 * 180.02562 * 7 5 4 30 30 H 1.08997 * 109.47106 * 300.00561 * 7 5 4 31 31 H 0.97006 * 119.99899 * 179.97438 * 11 10 8 32 32 H 1.08006 * 120.04841 * 0.02623 * 17 16 2 33 33 H 1.08002 * 119.92289 * 179.97438 * 18 17 16 34 34 H 1.07996 * 120.08465 * 180.27420 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1556 1.1236 0.0000 4 7 1.4551 2.3369 0.0005 5 6 2.1876 3.6057 0.0011 6 1 3.1399 3.4751 0.5150 7 6 2.4427 4.0480 -1.4412 8 6 1.3731 4.6555 0.7120 9 1 0.4064 4.4032 1.1220 10 6 1.8621 5.9385 0.8390 11 7 3.0395 6.2457 0.3402 12 14 0.8522 7.2401 1.7195 13 1 1.1900 7.2342 3.1656 14 1 1.1570 8.5752 1.1455 15 1 -0.5931 6.9454 1.5477 16 6 2.2445 -1.2774 -0.0006 17 6 3.6414 -1.2802 -0.0011 18 6 4.3267 -2.4770 -0.0011 19 6 3.6329 -3.6763 -0.0011 20 9 4.3099 -4.8454 -0.0016 21 6 2.2452 -3.6810 -0.0006 22 9 1.5745 -4.8537 -0.0011 23 6 1.5487 -2.4883 0.0058 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 0.4851 2.3369 0.0005 28 1 1.4903 4.1785 -1.9550 29 1 2.9881 4.9918 -1.4407 30 1 3.0318 3.2885 -1.9552 31 1 3.3835 7.1484 0.4292 32 1 4.1841 -0.3464 -0.0007 33 1 5.4067 -2.4794 -0.0019 34 1 0.4688 -2.4920 0.0107 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771888172.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:42 Heat of formation + Delta-G solvation = -43.164942 kcal Electronic energy + Delta-G solvation = -19282.003987 eV Core-core repulsion = 15851.082013 eV Total energy + Delta-G solvation = -3430.921973 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.47755 -49.55536 -40.20367 -38.25759 -36.15883 -33.76220 -32.15208 -31.32314 -29.62270 -28.32061 -27.24590 -24.50930 -23.86687 -22.37528 -20.70490 -19.23736 -18.70845 -18.06728 -17.75662 -17.30851 -17.01241 -16.40450 -16.06507 -15.98028 -15.45508 -15.25561 -15.10872 -14.92355 -14.53242 -13.93258 -13.81503 -13.45632 -13.16760 -13.12241 -12.90129 -12.78144 -12.63537 -12.35206 -12.26225 -12.10579 -11.91870 -11.13342 -10.84302 -10.57469 -10.14146 -9.87375 -8.39982 -8.16471 -6.33997 -0.35527 0.03175 1.43904 1.44451 1.47160 1.54808 2.12572 2.46056 2.59985 2.80196 3.12249 3.31959 3.54811 3.61055 3.97954 4.13514 4.31580 4.49483 4.60614 4.71421 4.77237 4.83243 4.90866 4.99485 5.06004 5.12845 5.14833 5.38708 5.40931 5.57673 5.74346 5.80579 5.89544 6.18602 6.40502 6.84519 7.37586 7.74170 8.87538 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.039356 B = 0.003460 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.288400 B = 8091.309241 C = 8469.871865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.036 3.964 3 N -0.231 5.231 4 N -0.631 5.631 5 C 0.305 3.695 6 H 0.004 0.996 7 C -0.136 4.136 8 C -0.548 4.548 9 H 0.061 0.939 10 C 0.021 3.979 11 N -0.913 5.913 12 Si 0.967 3.033 13 H -0.277 1.277 14 H -0.281 1.281 15 H -0.266 1.266 16 C 0.004 3.996 17 C -0.085 4.085 18 C -0.113 4.113 19 C 0.051 3.949 20 F -0.137 7.137 21 C 0.062 3.938 22 F -0.135 7.135 23 C -0.107 4.107 24 H 0.084 0.916 25 H 0.101 0.899 26 H 0.057 0.943 27 H 0.377 0.623 28 H 0.030 0.970 29 H 0.068 0.932 30 H 0.020 0.980 31 H 0.267 0.733 32 H 0.141 0.859 33 H 0.169 0.831 34 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.573 -16.604 -1.132 16.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 N -0.043 5.043 4 N -0.368 5.368 5 C 0.201 3.799 6 H 0.022 0.978 7 C -0.196 4.196 8 C -0.587 4.587 9 H 0.079 0.921 10 C -0.180 4.180 11 N -0.551 5.551 12 Si 0.792 3.208 13 H -0.203 1.203 14 H -0.207 1.207 15 H -0.190 1.190 16 C 0.001 3.999 17 C -0.105 4.105 18 C -0.131 4.131 19 C 0.030 3.970 20 F -0.116 7.116 21 C 0.042 3.958 22 F -0.113 7.113 23 C -0.128 4.128 24 H 0.103 0.897 25 H 0.119 0.881 26 H 0.076 0.924 27 H 0.216 0.784 28 H 0.049 0.951 29 H 0.087 0.913 30 H 0.039 0.961 31 H 0.076 0.924 32 H 0.159 0.841 33 H 0.186 0.814 34 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -1.450 -15.891 -1.155 15.999 hybrid contribution -1.302 0.276 0.368 1.381 sum -2.752 -15.615 -0.787 15.875 Atomic orbital electron populations 1.21120 0.90796 1.04035 1.03732 1.22724 0.94640 0.90245 1.07629 1.74023 1.29110 0.93366 1.07793 1.48589 1.06183 0.99994 1.82082 1.18152 0.91303 0.77809 0.92585 0.97777 1.22017 0.99098 1.00815 0.97631 1.21518 1.04800 0.95213 1.37181 0.92056 1.25663 0.96096 1.00223 0.95969 1.70009 1.18741 1.20893 1.45493 0.85419 0.79050 0.77928 0.78386 1.20302 1.20659 1.19020 1.18136 0.92650 0.90086 0.99005 1.21390 0.93444 0.98553 0.97125 1.21171 1.02351 0.89052 1.00565 1.17925 0.88499 0.82632 1.07918 1.91497 1.79894 1.46006 1.94205 1.17527 0.88366 0.82355 1.07562 1.91510 1.80162 1.45407 1.94255 1.21199 1.02274 0.88249 1.01083 0.89720 0.88071 0.92418 0.78373 0.95125 0.91344 0.96130 0.92423 0.84121 0.81357 0.80995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.04 71.23 0.64 -2.50 16 2 C 0.04 1.05 7.10 45.31 0.32 1.37 16 3 N -0.23 -8.71 10.61 -42.82 -0.45 -9.17 16 4 N -0.63 -26.54 5.95 -172.52 -1.03 -27.57 16 5 C 0.31 15.31 3.23 44.24 0.14 15.45 16 6 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 7 C -0.14 -6.59 9.29 71.98 0.67 -5.92 16 8 C -0.55 -28.83 8.74 25.60 0.22 -28.60 16 9 H 0.06 3.12 7.79 -2.91 -0.02 3.10 16 10 C 0.02 1.11 5.30 84.66 0.45 1.56 16 11 N -0.91 -50.44 11.32 21.45 0.24 -50.20 16 12 Si 0.97 41.45 29.54 68.60 2.03 43.47 16 13 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 14 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 15 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 16 C 0.00 0.10 5.87 -20.14 -0.12 -0.02 16 17 C -0.08 -2.06 9.57 22.54 0.22 -1.84 16 18 C -0.11 -2.32 10.01 22.27 0.22 -2.09 16 19 C 0.05 1.15 7.31 22.47 0.16 1.32 16 20 F -0.14 -3.25 17.17 44.97 0.77 -2.48 16 21 C 0.06 1.37 7.30 22.37 0.16 1.54 16 22 F -0.13 -3.11 17.17 44.97 0.77 -2.34 16 23 C -0.11 -2.18 9.34 22.58 0.21 -1.97 16 24 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.10 1.68 6.46 -2.39 -0.02 1.66 16 26 H 0.06 1.47 6.35 -2.39 -0.02 1.46 16 27 H 0.38 14.57 6.36 -213.32 -1.36 13.21 16 28 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.07 3.61 6.07 -2.39 -0.01 3.59 16 30 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.27 13.93 8.31 -92.70 -0.77 13.16 16 32 H 0.14 3.73 7.55 -2.91 -0.02 3.71 16 33 H 0.17 2.61 8.06 -2.91 -0.02 2.58 16 34 H 0.17 2.60 6.35 -2.91 -0.02 2.58 16 Total: -1.00 -58.55 301.04 5.43 -53.12 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -0.22 Total: 16.88 kcal Atomic # 6 Polarization: -25.04 SS G_CDS: 3.31 Total: -21.73 kcal Atomic # 7 Polarization: -85.69 SS G_CDS: -1.24 Total: -86.93 kcal Atomic # 9 Polarization: -6.36 SS G_CDS: 1.54 Total: -4.81 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.47 kcal Total: -58.55 5.43 -53.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771888172.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.959 kcal (2) G-P(sol) polarization free energy of solvation -58.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds