Wall clock time and date at job start Mon Mar 30 2020 07:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29739 * 120.00688 * 2 1 4 4 N 1.40105 * 119.99285 * 0.02562 * 3 2 1 5 5 C 1.46499 * 119.99713 * 179.72034 * 4 3 2 6 6 H 1.09003 * 109.47332 * 330.27237 * 5 4 3 7 7 C 1.53000 * 109.47458 * 90.27596 * 5 4 3 8 8 C 1.50699 * 109.47250 * 210.27693 * 5 4 3 9 9 H 1.08002 * 120.00000 * 0.02562 * 8 5 4 10 10 C 1.37884 * 120.00427 * 179.97438 * 8 5 4 11 11 N 1.31512 * 120.00055 * 179.97438 * 10 8 5 12 12 Si 1.86806 * 119.99670 * 0.02562 * 10 8 5 13 13 H 1.48496 * 109.46829 * 89.99476 * 12 10 8 14 14 H 1.48490 * 109.46674 * 209.99919 * 12 10 8 15 15 H 1.48502 * 109.46636 * 329.99890 * 12 10 8 16 16 C 1.47483 * 119.99938 * 180.02562 * 2 1 3 17 17 C 1.39678 * 120.13792 * 359.71593 * 16 2 1 18 18 C 1.37892 * 119.88566 * 179.72141 * 17 16 2 19 19 C 1.38623 * 120.18103 * 0.56098 * 18 17 16 20 20 F 1.35101 * 119.85535 * 179.73638 * 19 18 17 21 21 C 1.38523 * 120.28999 * 359.71695 * 19 18 17 22 22 C 1.38155 * 120.10488 * 0.02562 * 21 19 18 23 23 F 1.35103 * 120.08961 * 179.97438 * 22 21 19 24 24 H 1.08997 * 109.47617 * 89.99373 * 1 2 3 25 25 H 1.09002 * 109.47074 * 209.99728 * 1 2 3 26 26 H 1.09003 * 109.46734 * 329.99254 * 1 2 3 27 27 H 0.97001 * 120.00437 * 0.02562 * 4 3 2 28 28 H 1.08996 * 109.47205 * 180.02562 * 7 5 4 29 29 H 1.09003 * 109.46606 * 300.00280 * 7 5 4 30 30 H 1.08998 * 109.46704 * 59.99690 * 7 5 4 31 31 H 0.96998 * 119.99950 * 180.02562 * 11 10 8 32 32 H 1.08001 * 120.05914 * 359.97438 * 17 16 2 33 33 H 1.08000 * 119.90521 * 180.25630 * 18 17 16 34 34 H 1.08000 * 119.94621 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1558 1.1235 0.0000 4 7 1.4553 2.3368 0.0005 5 6 2.1878 3.6055 0.0067 6 1 3.1404 3.4726 0.5196 7 6 2.4424 4.0546 -1.4336 8 6 1.3737 4.6522 0.7227 9 1 0.4074 4.3977 1.1326 10 6 1.8628 5.9345 0.8556 11 7 1.1520 6.8480 1.4800 12 14 3.5344 6.3745 0.1473 13 1 3.3706 6.8477 -1.2507 14 1 4.1509 7.4498 0.9650 15 1 4.4104 5.1755 0.1646 16 6 2.2444 -1.2772 -0.0006 17 6 1.5489 -2.4886 0.0049 18 6 2.2435 -3.6797 -0.0015 19 6 3.6298 -3.6780 -0.0016 20 9 4.3037 -4.8489 -0.0024 21 6 4.3270 -2.4811 -0.0011 22 6 3.6431 -1.2807 -0.0001 23 9 4.3234 -0.1135 0.0008 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5140 27 1 0.4853 2.3369 0.0013 28 1 2.9878 4.9982 -1.4289 29 1 3.0313 3.2974 -1.9514 30 1 1.4898 4.1875 -1.9464 31 1 1.4960 7.7502 1.5731 32 1 0.4689 -2.4923 0.0099 33 1 1.7061 -4.6165 -0.0015 34 1 5.4070 -2.4863 -0.0016 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771891068.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:49 Heat of formation + Delta-G solvation = -14.597679 kcal Electronic energy + Delta-G solvation = -19691.458654 eV Core-core repulsion = 16261.775451 eV Total energy + Delta-G solvation = -3429.683204 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.08751 -48.64510 -39.01746 -37.03529 -34.59880 -32.20757 -31.12510 -30.41645 -28.59846 -27.23641 -25.14230 -23.34201 -22.86495 -20.65694 -19.42981 -18.21646 -17.50608 -16.89838 -16.08627 -15.95770 -15.70797 -15.20881 -15.15691 -14.87361 -14.31041 -14.09427 -13.84823 -13.56456 -13.09104 -12.81929 -12.38535 -12.24046 -12.14042 -12.01934 -11.71679 -11.52912 -11.45955 -10.83271 -10.70802 -10.22759 -9.71551 -9.57036 -9.25370 -9.16492 -8.88568 -8.68101 -6.99955 -6.23379 -4.26053 0.67854 0.96753 2.61387 3.20628 3.32362 3.34640 3.52206 3.56645 3.84796 4.28126 4.37672 4.48331 4.64646 4.77717 5.08173 5.11066 5.35753 5.41480 5.65480 5.72531 5.78912 5.85383 5.91807 6.04850 6.24311 6.27116 6.39503 6.54136 6.63273 6.75003 6.92150 7.29275 7.47626 7.89585 8.35755 8.75797 9.05783 9.36702 10.88999 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.034753 B = 0.004251 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.484874 B = 6585.821134 C = 7135.744311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.005 3.995 3 N -0.179 5.179 4 N -0.608 5.608 5 C 0.269 3.731 6 H 0.043 0.957 7 C -0.164 4.164 8 C -0.535 4.535 9 H 0.078 0.922 10 C 0.079 3.921 11 N -0.892 5.892 12 Si 0.888 3.112 13 H -0.276 1.276 14 H -0.294 1.294 15 H -0.263 1.263 16 C -0.040 4.040 17 C -0.061 4.061 18 C -0.162 4.162 19 C 0.115 3.885 20 F -0.137 7.137 21 C -0.193 4.193 22 C 0.145 3.855 23 F -0.108 7.108 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.378 0.622 28 H 0.047 0.953 29 H 0.034 0.966 30 H 0.052 0.948 31 H 0.268 0.732 32 H 0.146 0.854 33 H 0.141 0.859 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.436 -19.612 -4.146 20.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.181 4.181 3 N 0.006 4.994 4 N -0.345 5.345 5 C 0.165 3.835 6 H 0.061 0.939 7 C -0.222 4.222 8 C -0.574 4.574 9 H 0.096 0.904 10 C -0.125 4.125 11 N -0.529 5.529 12 Si 0.718 3.282 13 H -0.203 1.203 14 H -0.221 1.221 15 H -0.188 1.188 16 C -0.044 4.044 17 C -0.082 4.082 18 C -0.181 4.181 19 C 0.094 3.906 20 F -0.116 7.116 21 C -0.212 4.212 22 C 0.123 3.877 23 F -0.086 7.086 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.217 0.783 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.164 0.836 33 H 0.159 0.841 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.469 -18.751 -4.077 19.347 hybrid contribution -0.084 0.245 -0.353 0.438 sum 2.386 -18.506 -4.430 19.178 Atomic orbital electron populations 1.20976 0.92416 1.03182 1.02468 1.22082 0.93140 0.90276 1.12623 1.74262 1.27972 0.93075 1.04061 1.48715 1.06470 0.99833 1.79488 1.18923 0.93674 0.78779 0.92150 0.93874 1.22569 1.00499 0.99241 0.99937 1.21040 1.05940 0.93547 1.36834 0.90376 1.24812 0.97346 0.95834 0.94479 1.69862 1.37875 1.03482 1.41693 0.86842 0.84554 0.78417 0.78434 1.20269 1.22097 1.18766 1.18435 0.90562 0.92577 1.02804 1.20937 1.00533 0.89430 0.97276 1.21015 0.91978 0.99764 1.05329 1.17329 0.89917 0.80626 1.02690 1.91505 1.80539 1.45657 1.93866 1.20954 1.01727 0.90326 1.08218 1.17413 0.89078 0.81429 0.99821 1.91635 1.79157 1.45063 1.92719 0.91200 0.90988 0.91345 0.78326 0.93458 0.94677 0.92900 0.92220 0.83642 0.84135 0.83619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 9.04 36.00 0.33 -1.31 16 2 C 0.01 0.08 7.10 -79.71 -0.57 -0.48 16 3 N -0.18 -3.51 9.53 35.11 0.33 -3.18 16 4 N -0.61 -12.81 5.95 -5.88 -0.04 -12.84 16 5 C 0.27 6.44 2.82 -69.08 -0.20 6.25 16 6 H 0.04 1.11 7.20 -51.93 -0.37 0.73 16 7 C -0.16 -3.63 9.00 37.16 0.33 -3.30 16 8 C -0.53 -14.61 9.32 -34.44 -0.32 -14.93 16 9 H 0.08 2.28 8.03 -52.49 -0.42 1.86 16 10 C 0.08 2.21 5.45 -17.82 -0.10 2.12 16 11 N -0.89 -26.44 13.96 55.43 0.77 -25.67 16 12 Si 0.89 21.49 24.37 -169.99 -4.14 17.35 16 13 H -0.28 -6.46 6.87 56.52 0.39 -6.08 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 H -0.26 -6.22 6.53 56.52 0.37 -5.85 16 16 C -0.04 -0.55 5.87 -104.98 -0.62 -1.17 16 17 C -0.06 -0.61 9.36 -39.17 -0.37 -0.98 16 18 C -0.16 -1.50 10.01 -39.57 -0.40 -1.89 16 19 C 0.11 1.24 7.30 -39.33 -0.29 0.96 16 20 F -0.14 -1.50 17.26 2.25 0.04 -1.46 16 21 C -0.19 -2.29 9.99 -39.51 -0.39 -2.68 16 22 C 0.14 2.08 7.28 -39.00 -0.28 1.80 16 23 F -0.11 -1.87 15.35 2.25 0.03 -1.83 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.07 0.69 6.46 -51.93 -0.34 0.35 16 26 H 0.07 0.94 6.35 -51.93 -0.33 0.61 16 27 H 0.38 7.40 6.36 -182.59 -1.16 6.23 16 28 H 0.05 1.07 3.27 -51.93 -0.17 0.90 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.15 1.07 6.35 -52.49 -0.33 0.73 16 33 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 292.34 15.07 4.41 4.41 Total: -1.00 -30.12 292.34 -5.87 -36.00 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -4.42 Total: 2.84 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -2.86 Total: -15.62 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 1.07 Total: -41.68 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.07 Total: -3.29 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.14 Total: 17.35 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.12 -5.87 -36.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771891068.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.397 kcal (2) G-P(sol) polarization free energy of solvation -30.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds