Wall clock time and date at job start Mon Mar 30 2020 07:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29739 * 120.00688 * 2 1 4 4 N 1.40105 * 119.99285 * 0.02562 * 3 2 1 5 5 C 1.46499 * 119.99713 * 179.72034 * 4 3 2 6 6 H 1.09003 * 109.47332 * 330.27237 * 5 4 3 7 7 C 1.53000 * 109.47458 * 90.27596 * 5 4 3 8 8 C 1.50699 * 109.47250 * 210.27693 * 5 4 3 9 9 H 1.08002 * 120.00000 * 0.02562 * 8 5 4 10 10 C 1.37884 * 120.00427 * 179.97438 * 8 5 4 11 11 N 1.31512 * 120.00055 * 179.97438 * 10 8 5 12 12 Si 1.86806 * 119.99670 * 0.02562 * 10 8 5 13 13 H 1.48496 * 109.46829 * 89.99476 * 12 10 8 14 14 H 1.48490 * 109.46674 * 209.99919 * 12 10 8 15 15 H 1.48502 * 109.46636 * 329.99890 * 12 10 8 16 16 C 1.47483 * 119.99938 * 180.02562 * 2 1 3 17 17 C 1.39678 * 120.13792 * 359.71593 * 16 2 1 18 18 C 1.37892 * 119.88566 * 179.72141 * 17 16 2 19 19 C 1.38623 * 120.18103 * 0.56098 * 18 17 16 20 20 F 1.35101 * 119.85535 * 179.73638 * 19 18 17 21 21 C 1.38523 * 120.28999 * 359.71695 * 19 18 17 22 22 C 1.38155 * 120.10488 * 0.02562 * 21 19 18 23 23 F 1.35103 * 120.08961 * 179.97438 * 22 21 19 24 24 H 1.08997 * 109.47617 * 89.99373 * 1 2 3 25 25 H 1.09002 * 109.47074 * 209.99728 * 1 2 3 26 26 H 1.09003 * 109.46734 * 329.99254 * 1 2 3 27 27 H 0.97001 * 120.00437 * 0.02562 * 4 3 2 28 28 H 1.08996 * 109.47205 * 180.02562 * 7 5 4 29 29 H 1.09003 * 109.46606 * 300.00280 * 7 5 4 30 30 H 1.08998 * 109.46704 * 59.99690 * 7 5 4 31 31 H 0.96998 * 119.99950 * 180.02562 * 11 10 8 32 32 H 1.08001 * 120.05914 * 359.97438 * 17 16 2 33 33 H 1.08000 * 119.90521 * 180.25630 * 18 17 16 34 34 H 1.08000 * 119.94621 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1558 1.1235 0.0000 4 7 1.4553 2.3368 0.0005 5 6 2.1878 3.6055 0.0067 6 1 3.1404 3.4726 0.5196 7 6 2.4424 4.0546 -1.4336 8 6 1.3737 4.6522 0.7227 9 1 0.4074 4.3977 1.1326 10 6 1.8628 5.9345 0.8556 11 7 1.1520 6.8480 1.4800 12 14 3.5344 6.3745 0.1473 13 1 3.3706 6.8477 -1.2507 14 1 4.1509 7.4498 0.9650 15 1 4.4104 5.1755 0.1646 16 6 2.2444 -1.2772 -0.0006 17 6 1.5489 -2.4886 0.0049 18 6 2.2435 -3.6797 -0.0015 19 6 3.6298 -3.6780 -0.0016 20 9 4.3037 -4.8489 -0.0024 21 6 4.3270 -2.4811 -0.0011 22 6 3.6431 -1.2807 -0.0001 23 9 4.3234 -0.1135 0.0008 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5140 27 1 0.4853 2.3369 0.0013 28 1 2.9878 4.9982 -1.4289 29 1 3.0313 3.2974 -1.9514 30 1 1.4898 4.1875 -1.9464 31 1 1.4960 7.7502 1.5731 32 1 0.4689 -2.4923 0.0099 33 1 1.7061 -4.6165 -0.0015 34 1 5.4070 -2.4863 -0.0016 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771891068.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:48 Heat of formation + Delta-G solvation = -33.729168 kcal Electronic energy + Delta-G solvation = -19692.288258 eV Core-core repulsion = 16261.775451 eV Total energy + Delta-G solvation = -3430.512807 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.96618 -49.81881 -40.00842 -38.39765 -36.27287 -34.03143 -32.29618 -31.57590 -29.68898 -28.61528 -27.15874 -24.42385 -23.79687 -22.36210 -20.74283 -19.29300 -18.93647 -18.18990 -17.62026 -16.93402 -16.86281 -16.69263 -16.23547 -16.06053 -15.51031 -15.23380 -15.13410 -14.96181 -14.76293 -14.15325 -13.98635 -13.68410 -13.42025 -13.18570 -12.96157 -12.78294 -12.67320 -12.39333 -12.27445 -11.99797 -11.54306 -11.31540 -10.85130 -10.83097 -10.14027 -9.86780 -8.44491 -8.38258 -6.45781 -0.30947 0.08180 1.27990 1.35182 1.45207 1.49398 2.10464 2.25824 2.58323 2.91730 2.96793 3.44229 3.53184 3.66414 3.96125 4.17525 4.26791 4.41266 4.46546 4.59332 4.69775 4.73046 4.84090 4.84946 4.97070 5.00616 5.04897 5.13620 5.28693 5.32554 5.48066 5.68257 5.81002 6.06225 6.45097 6.60848 7.20824 7.67969 8.76725 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.034753 B = 0.004251 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.484874 B = 6585.821134 C = 7135.744311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.040 3.960 3 N -0.238 5.238 4 N -0.631 5.631 5 C 0.279 3.721 6 H 0.021 0.979 7 C -0.155 4.155 8 C -0.536 4.536 9 H 0.044 0.956 10 C 0.027 3.973 11 N -0.937 5.937 12 Si 0.946 3.054 13 H -0.258 1.258 14 H -0.292 1.292 15 H -0.257 1.257 16 C -0.072 4.072 17 C -0.038 4.038 18 C -0.146 4.146 19 C 0.121 3.879 20 F -0.135 7.135 21 C -0.197 4.197 22 C 0.119 3.881 23 F -0.134 7.134 24 H 0.088 0.912 25 H 0.110 0.890 26 H 0.051 0.949 27 H 0.378 0.622 28 H 0.042 0.958 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.271 0.729 32 H 0.182 0.818 33 H 0.180 0.820 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.224 -22.949 -5.179 23.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.149 4.149 3 N -0.049 5.049 4 N -0.369 5.369 5 C 0.174 3.826 6 H 0.039 0.961 7 C -0.214 4.214 8 C -0.575 4.575 9 H 0.063 0.937 10 C -0.172 4.172 11 N -0.576 5.576 12 Si 0.773 3.227 13 H -0.184 1.184 14 H -0.219 1.219 15 H -0.182 1.182 16 C -0.075 4.075 17 C -0.058 4.058 18 C -0.165 4.165 19 C 0.101 3.899 20 F -0.113 7.113 21 C -0.217 4.217 22 C 0.097 3.903 23 F -0.113 7.113 24 H 0.107 0.893 25 H 0.129 0.871 26 H 0.070 0.930 27 H 0.218 0.782 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.200 0.800 33 H 0.197 0.803 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.260 -22.114 -5.120 22.812 hybrid contribution -0.083 0.854 0.021 0.859 sum 2.177 -21.260 -5.099 21.971 Atomic orbital electron populations 1.21118 0.89947 1.04258 1.03989 1.22911 0.95202 0.90151 1.06595 1.74306 1.28546 0.93333 1.08694 1.48202 1.06030 0.99757 1.82865 1.18487 0.92115 0.79598 0.92437 0.96144 1.22436 1.00865 0.99229 0.98846 1.21283 1.04966 0.94725 1.36533 0.93729 1.25614 1.00993 0.95762 0.94854 1.69987 1.39940 1.04085 1.43586 0.85892 0.80107 0.78216 0.78493 1.18412 1.21879 1.18157 1.18646 0.90363 0.92942 1.05599 1.21326 1.02142 0.87907 0.94385 1.21435 0.91170 1.01049 1.02828 1.17512 0.90739 0.80119 1.01536 1.91523 1.80722 1.45389 1.93704 1.21036 1.02383 0.90065 1.08199 1.17802 0.89807 0.81287 1.01393 1.91568 1.79789 1.46700 1.93220 0.89304 0.87116 0.92995 0.78192 0.93910 0.93321 0.92482 0.91981 0.80044 0.80261 0.82837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 9.04 71.23 0.64 -2.36 16 2 C 0.04 1.22 7.10 45.31 0.32 1.54 16 3 N -0.24 -9.47 9.53 -42.83 -0.41 -9.88 16 4 N -0.63 -27.44 5.95 -172.52 -1.03 -28.47 16 5 C 0.28 13.80 2.82 44.25 0.12 13.92 16 6 H 0.02 1.10 7.20 -2.39 -0.02 1.08 16 7 C -0.16 -6.88 9.00 71.98 0.65 -6.23 16 8 C -0.54 -30.53 9.32 25.60 0.24 -30.29 16 9 H 0.04 2.76 8.03 -2.91 -0.02 2.73 16 10 C 0.03 1.57 5.45 84.66 0.46 2.03 16 11 N -0.94 -57.34 13.96 21.45 0.30 -57.04 16 12 Si 0.95 44.95 24.37 68.60 1.67 46.63 16 13 H -0.26 -11.49 6.87 99.48 0.68 -10.81 16 14 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 15 H -0.26 -11.89 6.53 99.48 0.65 -11.24 16 16 C -0.07 -1.80 5.87 -20.10 -0.12 -1.92 16 17 C -0.04 -0.57 9.36 22.54 0.21 -0.36 16 18 C -0.15 -1.93 10.01 22.28 0.22 -1.71 16 19 C 0.12 2.20 7.30 22.43 0.16 2.36 16 20 F -0.13 -2.47 17.26 44.97 0.78 -1.69 16 21 C -0.20 -4.36 9.99 22.32 0.22 -4.13 16 22 C 0.12 3.33 7.28 22.65 0.16 3.50 16 23 F -0.13 -4.80 15.35 44.97 0.69 -4.11 16 24 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.11 1.59 6.46 -2.39 -0.02 1.57 16 26 H 0.05 1.38 6.35 -2.39 -0.02 1.37 16 27 H 0.38 15.43 6.36 -213.32 -1.36 14.07 16 28 H 0.04 1.90 3.27 -2.39 -0.01 1.89 16 29 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 32 H 0.18 1.44 6.35 -2.91 -0.02 1.42 16 33 H 0.18 1.10 8.06 -2.91 -0.02 1.07 16 34 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -69.23 292.34 5.02 -64.21 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -0.29 Total: 14.02 kcal Atomic # 6 Polarization: -26.96 SS G_CDS: 3.31 Total: -23.66 kcal Atomic # 7 Polarization: -94.25 SS G_CDS: -1.14 Total: -95.39 kcal Atomic # 9 Polarization: -7.27 SS G_CDS: 1.47 Total: -5.80 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.67 Total: 46.63 kcal Total: -69.23 5.02 -64.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771891068.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.479 kcal (2) G-P(sol) polarization free energy of solvation -69.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds