Wall clock time and date at job start Mon Mar 30 2020 07:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29747 * 119.99613 * 2 1 4 4 N 1.40095 * 120.00348 * 0.02562 * 3 2 1 5 5 C 1.46499 * 120.00390 * 179.97438 * 4 3 2 6 6 H 1.09007 * 109.46342 * 329.99546 * 5 4 3 7 7 C 1.52998 * 109.47185 * 89.99481 * 5 4 3 8 8 C 1.50701 * 109.47260 * 209.99968 * 5 4 3 9 9 H 1.08002 * 119.99761 * 359.97438 * 8 5 4 10 10 C 1.37871 * 119.99694 * 180.27562 * 8 5 4 11 11 N 1.31514 * 120.00482 * 359.71466 * 10 8 5 12 12 Si 1.86801 * 119.99746 * 179.72062 * 10 8 5 13 13 H 1.48504 * 109.47266 * 60.00049 * 12 10 8 14 14 H 1.48504 * 109.46970 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47383 * 299.99456 * 12 10 8 16 16 C 1.47472 * 120.00230 * 180.02562 * 2 1 3 17 17 C 1.39707 * 120.15181 * 359.72159 * 16 2 1 18 18 C 1.37924 * 119.90673 * 179.78998 * 17 16 2 19 19 C 1.38379 * 120.23084 * 0.49138 * 18 17 16 20 20 C 1.38496 * 120.31277 * 359.74126 * 19 18 17 21 21 F 1.35097 * 119.95687 * 180.02562 * 20 19 18 22 22 C 1.38406 * 120.08415 * 0.02562 * 20 19 18 23 23 F 1.35107 * 120.11152 * 180.02562 * 22 20 19 24 24 H 1.09002 * 109.47110 * 89.99887 * 1 2 3 25 25 H 1.09001 * 109.47281 * 209.99447 * 1 2 3 26 26 H 1.08999 * 109.47221 * 329.99875 * 1 2 3 27 27 H 0.97001 * 119.99751 * 359.97438 * 4 3 2 28 28 H 1.09004 * 109.46783 * 180.02562 * 7 5 4 29 29 H 1.09005 * 109.46870 * 300.00240 * 7 5 4 30 30 H 1.08998 * 109.47156 * 60.00179 * 7 5 4 31 31 H 0.96995 * 120.00207 * 179.97438 * 11 10 8 32 32 H 1.07998 * 120.04735 * 0.02562 * 17 16 2 33 33 H 1.08001 * 119.88172 * 180.21150 * 18 17 16 34 34 H 1.07994 * 119.84675 * 179.76625 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1557 1.1237 0.0000 4 7 1.4552 2.3369 0.0005 5 6 2.1876 3.6057 0.0011 6 1 3.1400 3.4751 0.5150 7 6 2.4427 4.0480 -1.4412 8 6 1.3731 4.6556 0.7120 9 1 0.4063 4.4031 1.1219 10 6 1.8594 5.9400 0.8335 11 7 3.0365 6.2476 0.3340 12 14 0.8464 7.2434 1.7078 13 1 0.5980 6.8197 3.1093 14 1 1.5868 8.5307 1.7042 15 1 -0.4506 7.4159 1.0055 16 6 2.2444 -1.2771 -0.0006 17 6 1.5492 -2.4889 0.0048 18 6 2.2439 -3.6804 -0.0002 19 6 3.6277 -3.6800 -0.0002 20 6 4.3264 -2.4842 -0.0006 21 9 5.6773 -2.4922 -0.0011 22 6 3.6424 -1.2810 -0.0005 23 9 4.3234 -0.1141 -0.0014 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5137 26 1 -0.3633 0.8900 0.5138 27 1 0.4852 2.3369 0.0005 28 1 2.9880 4.9918 -1.4407 29 1 3.0319 3.2885 -1.9553 30 1 1.4903 4.1785 -1.9550 31 1 3.3784 7.1512 0.4192 32 1 0.4692 -2.4927 0.0089 33 1 1.7060 -4.6169 0.0005 34 1 4.1654 -4.6165 -0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776259285.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:55 Heat of formation + Delta-G solvation = -39.827448 kcal Electronic energy + Delta-G solvation = -19789.014532 eV Core-core repulsion = 16358.237284 eV Total energy + Delta-G solvation = -3430.777248 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.37581 -49.44180 -40.02591 -38.34718 -36.24081 -33.84408 -31.84872 -31.32889 -29.65938 -28.43138 -27.30027 -24.66535 -23.47959 -22.41025 -20.74446 -19.20460 -18.58594 -18.08273 -17.74407 -17.27071 -17.01503 -16.45762 -16.00700 -15.92889 -15.56497 -15.16276 -15.04971 -14.75413 -14.52482 -13.94957 -13.76848 -13.24338 -13.19938 -13.03474 -12.91735 -12.75933 -12.61406 -12.37619 -12.28774 -12.12003 -11.99428 -11.17942 -10.80197 -10.61048 -10.15228 -9.67971 -8.45300 -8.19086 -6.38192 -0.23065 0.03272 1.41300 1.44062 1.51981 1.56619 2.13721 2.45048 2.63859 2.85259 3.08998 3.45438 3.59214 3.81752 3.98271 4.24121 4.30692 4.44379 4.66170 4.72700 4.84473 4.91534 4.92156 5.07490 5.11163 5.13339 5.20888 5.31338 5.40353 5.53132 5.73884 5.84061 5.86636 6.14052 6.37314 6.80185 7.33501 7.74222 8.85551 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.031076 B = 0.004294 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.798412 B = 6519.448237 C = 7091.548128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.026 3.974 3 N -0.240 5.240 4 N -0.631 5.631 5 C 0.306 3.694 6 H -0.007 1.007 7 C -0.134 4.134 8 C -0.549 4.549 9 H 0.064 0.936 10 C 0.017 3.983 11 N -0.916 5.916 12 Si 0.975 3.025 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.264 1.264 16 C -0.038 4.038 17 C -0.078 4.078 18 C -0.080 4.080 19 C -0.117 4.117 20 C 0.040 3.960 21 F -0.146 7.146 22 C 0.039 3.961 23 F -0.142 7.142 24 H 0.086 0.914 25 H 0.113 0.887 26 H 0.053 0.947 27 H 0.377 0.623 28 H 0.069 0.931 29 H 0.011 0.989 30 H 0.034 0.966 31 H 0.267 0.733 32 H 0.179 0.821 33 H 0.193 0.807 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.211 -21.943 -1.037 22.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.162 4.162 3 N -0.052 5.052 4 N -0.369 5.369 5 C 0.202 3.798 6 H 0.011 0.989 7 C -0.193 4.193 8 C -0.588 4.588 9 H 0.082 0.918 10 C -0.183 4.183 11 N -0.554 5.554 12 Si 0.799 3.201 13 H -0.197 1.197 14 H -0.207 1.207 15 H -0.189 1.189 16 C -0.041 4.041 17 C -0.098 4.098 18 C -0.098 4.098 19 C -0.136 4.136 20 C 0.020 3.980 21 F -0.125 7.125 22 C 0.017 3.983 23 F -0.121 7.121 24 H 0.105 0.895 25 H 0.131 0.869 26 H 0.072 0.928 27 H 0.217 0.783 28 H 0.088 0.912 29 H 0.030 0.970 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.196 0.804 33 H 0.210 0.790 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -4.997 -21.080 -1.061 21.690 hybrid contribution -0.380 1.452 0.326 1.536 sum -5.377 -19.628 -0.734 20.364 Atomic orbital electron populations 1.21087 0.89404 1.04392 1.03899 1.22988 0.95475 0.90068 1.07709 1.74376 1.29224 0.93816 1.07804 1.48554 1.06036 1.00004 1.82330 1.18124 0.91066 0.78067 0.92550 0.98946 1.21998 0.99095 1.00562 0.97661 1.21467 1.04858 0.95015 1.37415 0.91779 1.25775 0.96173 1.00401 0.95937 1.70029 1.18975 1.20880 1.45549 0.85367 0.78603 0.77364 0.78802 1.19749 1.20683 1.18901 1.18548 0.89012 0.93591 1.02946 1.21676 1.02418 0.88726 0.96974 1.21521 0.92144 0.99779 0.96327 1.21571 0.96002 0.95797 1.00241 1.18031 0.77103 0.94050 1.08815 1.91472 1.29261 1.97348 1.94433 1.18467 0.91167 0.80806 1.07865 1.91542 1.79811 1.46934 1.93777 0.89525 0.86875 0.92772 0.78347 0.91220 0.96990 0.94704 0.92370 0.80399 0.79008 0.80675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 9.04 71.24 0.64 -2.41 16 2 C 0.03 0.87 7.10 45.30 0.32 1.19 16 3 N -0.24 -10.77 9.54 -42.83 -0.41 -11.18 16 4 N -0.63 -29.80 5.95 -172.52 -1.03 -30.83 16 5 C 0.31 16.94 3.23 44.24 0.14 17.08 16 6 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 7 C -0.13 -7.13 9.29 71.98 0.67 -6.46 16 8 C -0.55 -30.71 8.74 25.60 0.22 -30.48 16 9 H 0.06 3.42 7.79 -2.91 -0.02 3.40 16 10 C 0.02 0.97 5.30 84.65 0.45 1.41 16 11 N -0.92 -53.64 11.31 21.45 0.24 -53.39 16 12 Si 0.97 43.19 29.54 68.60 2.03 45.22 16 13 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 14 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 15 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 16 C -0.04 -1.07 5.87 -20.11 -0.12 -1.18 16 17 C -0.08 -1.23 9.36 22.55 0.21 -1.01 16 18 C -0.08 -0.87 10.03 22.23 0.22 -0.65 16 19 C -0.12 -1.84 10.02 22.36 0.22 -1.62 16 20 C 0.04 1.08 7.30 22.37 0.16 1.24 16 21 F -0.15 -4.44 17.18 44.97 0.77 -3.67 16 22 C 0.04 1.33 7.29 22.69 0.17 1.49 16 23 F -0.14 -6.26 15.27 44.97 0.69 -5.57 16 24 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.11 1.70 6.46 -2.39 -0.02 1.68 16 26 H 0.05 1.46 6.35 -2.39 -0.02 1.45 16 27 H 0.38 15.94 6.36 -213.32 -1.36 14.59 16 28 H 0.07 3.98 6.06 -2.38 -0.01 3.96 16 29 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.03 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 32 H 0.18 1.48 6.35 -2.91 -0.02 1.46 16 33 H 0.19 0.22 8.06 -2.91 -0.02 0.20 16 34 H 0.18 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -73.44 299.03 5.39 -68.04 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -0.22 Total: 12.78 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: 3.32 Total: -21.39 kcal Atomic # 7 Polarization: -94.20 SS G_CDS: -1.19 Total: -95.40 kcal Atomic # 9 Polarization: -10.71 SS G_CDS: 1.46 Total: -9.25 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -73.44 5.39 -68.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776259285.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.214 kcal (2) G-P(sol) polarization free energy of solvation -73.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds