Wall clock time and date at job start Mon Mar 30 2020 07:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99562 * 2 1 4 4 H 1.48499 * 109.47078 * 88.91205 * 3 2 1 5 5 H 1.48502 * 109.46799 * 208.91055 * 3 2 1 6 6 H 1.48496 * 109.47480 * 328.90930 * 3 2 1 7 7 C 1.37873 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00193 * 355.12316 * 7 2 1 9 9 C 1.50703 * 119.99850 * 175.12620 * 7 2 1 10 10 O 1.45198 * 112.84956 * 297.05984 * 9 7 2 11 11 C 1.34796 * 117.00441 * 294.72971 * 10 9 7 12 12 O 1.21534 * 119.99472 * 2.71180 * 11 10 9 13 13 C 1.47147 * 120.00248 * 182.71440 * 11 10 9 14 14 F 1.35103 * 120.00109 * 4.38392 * 13 11 10 15 15 C 1.33195 * 120.00147 * 184.38531 * 13 11 10 16 16 C 1.51451 * 126.34096 * 4.75800 * 15 13 11 17 17 C 1.54275 * 106.85241 * 180.24146 * 16 15 13 18 18 C 1.54984 * 103.66288 * 23.48662 * 17 16 15 19 19 C 1.51843 * 126.34434 * 185.07079 * 15 13 11 20 20 C 1.53788 * 113.61102 * 165.86918 * 9 7 2 21 21 C 1.53956 * 87.01471 * 220.04566 * 20 9 7 22 22 C 1.53772 * 87.11273 * 25.36389 * 21 20 9 23 23 H 0.96999 * 120.00046 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.98532 * 299.73166 * 16 15 13 25 25 H 1.09004 * 109.98086 * 61.03381 * 16 15 13 26 26 H 1.08998 * 110.79644 * 264.85950 * 17 16 15 27 27 H 1.09002 * 110.43227 * 141.93447 * 17 16 15 28 28 H 1.08998 * 110.83868 * 204.49101 * 18 17 16 29 29 H 1.08995 * 110.83470 * 80.90536 * 18 17 16 30 30 H 1.08995 * 110.44449 * 274.92648 * 19 15 13 31 31 H 1.09004 * 110.43786 * 37.32742 * 19 15 13 32 32 H 1.08992 * 113.61543 * 334.56193 * 20 9 7 33 33 H 1.09001 * 113.61477 * 105.46768 * 20 9 7 34 34 H 1.09002 * 113.53817 * 270.80955 * 21 20 9 35 35 H 1.09002 * 113.74245 * 139.94413 * 21 20 9 36 36 H 1.09004 * 113.61304 * 220.09069 * 22 21 20 37 37 H 1.08999 * 113.69218 * 89.19804 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4735 2.0599 1.3998 5 1 3.5580 1.4338 -0.6769 6 1 1.4582 2.6460 -0.7230 7 6 2.0045 -1.1940 0.0005 8 1 1.4675 -2.1276 0.0805 9 6 3.5075 -1.1963 -0.1104 10 8 3.9811 -0.6402 -1.3652 11 6 3.6712 -1.3157 -2.4898 12 8 2.9813 -2.3143 -2.4280 13 6 4.1681 -0.8440 -3.7920 14 9 5.0069 0.2133 -3.8523 15 6 3.7910 -1.4595 -4.9114 16 6 2.7848 -2.5861 -5.0208 17 6 2.6949 -2.9620 -6.5144 18 6 4.0486 -2.4803 -7.0952 19 6 4.2951 -1.1661 -6.3133 20 6 4.1493 -2.5477 0.2458 21 6 5.2524 -1.7447 0.9590 22 6 4.2173 -0.6198 1.1259 23 1 -0.4850 0.8400 -0.0004 24 1 3.1210 -3.4439 -4.4383 25 1 1.8107 -2.2516 -4.6637 26 1 1.8656 -2.4429 -6.9948 27 1 2.5909 -4.0409 -6.6297 28 1 3.9644 -2.2853 -8.1643 29 1 4.8371 -3.2052 -6.8932 30 1 3.7297 -0.3471 -6.7576 31 1 5.3584 -0.9267 -6.2931 32 1 3.5449 -3.1538 0.9205 33 1 4.5046 -3.1044 -0.6214 34 1 6.0860 -1.4781 0.3092 35 1 5.5751 -2.1846 1.9026 36 1 4.6274 0.3778 0.9683 37 1 3.6309 -0.6965 2.0415 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816076716.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:07 Heat of formation + Delta-G solvation = -95.498653 kcal Electronic energy + Delta-G solvation = -21392.267626 eV Core-core repulsion = 18050.243847 eV Total energy + Delta-G solvation = -3342.023779 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.48311 -39.74797 -38.24550 -36.99126 -34.40583 -32.40066 -31.15900 -28.80781 -27.13656 -25.63523 -24.98132 -22.61108 -21.43969 -20.79861 -18.67460 -18.40920 -17.54979 -16.56302 -16.13497 -15.99728 -15.34165 -15.09586 -14.82402 -14.37420 -13.83076 -13.67018 -13.31725 -13.04289 -12.78133 -12.38665 -12.12335 -11.77963 -11.56134 -11.43565 -11.41531 -11.18698 -11.13129 -11.02880 -10.67306 -10.40676 -10.30268 -10.03751 -9.89210 -9.57296 -8.97318 -8.76146 -8.64191 -8.43829 -6.19439 -4.25165 1.37705 3.23510 3.29934 3.43982 3.55665 3.58232 4.31920 4.41109 4.60851 4.80424 4.95241 5.12749 5.25658 5.30820 5.42168 5.43129 5.52895 5.58520 5.70241 5.74559 5.77953 5.94140 6.00837 6.08208 6.13297 6.25621 6.28296 6.39562 6.55798 6.58881 6.63359 6.71923 6.95116 7.20283 7.39983 7.67037 8.34511 8.73894 8.90239 9.43161 10.90974 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.021148 B = 0.006953 C = 0.006570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.666871 B = 4026.220298 C = 4260.626141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.084 3.916 3 Si 0.857 3.143 4 H -0.276 1.276 5 H -0.233 1.233 6 H -0.290 1.290 7 C -0.513 4.513 8 H 0.085 0.915 9 C 0.191 3.809 10 O -0.345 6.345 11 C 0.489 3.511 12 O -0.469 6.469 13 C 0.026 3.974 14 F -0.132 7.132 15 C -0.091 4.091 16 C -0.082 4.082 17 C -0.127 4.127 18 C -0.121 4.121 19 C -0.092 4.092 20 C -0.138 4.138 21 C -0.145 4.145 22 C -0.127 4.127 23 H 0.266 0.734 24 H 0.094 0.906 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.301 -3.022 -10.207 14.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.121 4.121 3 Si 0.683 3.317 4 H -0.202 1.202 5 H -0.156 1.156 6 H -0.217 1.217 7 C -0.549 4.549 8 H 0.102 0.898 9 C 0.157 3.843 10 O -0.263 6.263 11 C 0.331 3.669 12 O -0.357 6.357 13 C 0.005 3.995 14 F -0.111 7.111 15 C -0.093 4.093 16 C -0.118 4.118 17 C -0.164 4.164 18 C -0.159 4.159 19 C -0.128 4.128 20 C -0.175 4.175 21 C -0.183 4.183 22 C -0.164 4.164 23 H 0.076 0.924 24 H 0.112 0.888 25 H 0.108 0.892 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.956 -3.180 -10.121 13.884 hybrid contribution 0.343 1.251 0.083 1.300 sum 9.299 -1.929 -10.039 13.819 Atomic orbital electron populations 1.69934 1.06492 1.27394 1.47928 1.25012 0.94644 0.99420 0.92993 0.87180 0.82409 0.83195 0.78921 1.20169 1.15637 1.21697 1.21036 0.87883 0.95084 1.50938 0.89750 1.21161 0.94349 0.90809 0.77992 1.86692 1.71743 1.52167 1.15664 1.20692 0.78986 0.82588 0.84604 1.90824 1.33434 1.24503 1.86947 1.18425 0.98131 0.90689 0.92241 1.91467 1.69124 1.53613 1.96868 1.22931 0.96264 0.96763 0.93361 1.21185 0.98052 0.96348 0.96251 1.22464 0.97346 1.01278 0.95326 1.22518 0.97919 0.96246 0.99190 1.21450 1.01513 0.98918 0.90955 1.23293 0.96976 0.97400 0.99877 1.22945 0.96960 0.98361 1.00008 1.23209 0.97074 0.97633 0.98532 0.92412 0.88768 0.89158 0.91223 0.91000 0.90951 0.91047 0.89402 0.90370 0.89352 0.92491 0.91023 0.92149 0.92257 0.88423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.90 13.96 55.43 0.77 -26.13 16 2 C 0.08 2.45 5.47 -17.82 -0.10 2.36 16 3 Si 0.86 21.78 25.16 -169.99 -4.28 17.51 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.23 -5.83 5.40 56.52 0.31 -5.52 16 6 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 7 C -0.51 -14.53 7.98 -34.44 -0.27 -14.80 16 8 H 0.08 2.63 8.06 -52.49 -0.42 2.21 16 9 C 0.19 4.62 0.10 -90.96 -0.01 4.61 16 10 O -0.35 -8.43 7.71 -40.75 -0.31 -8.74 16 11 C 0.49 11.19 7.28 34.35 0.25 11.44 16 12 O -0.47 -11.28 12.31 -19.29 -0.24 -11.51 16 13 C 0.03 0.49 7.42 -37.73 -0.28 0.21 16 14 F -0.13 -2.50 16.99 2.25 0.04 -2.46 16 15 C -0.09 -1.44 6.15 -100.17 -0.62 -2.06 16 16 C -0.08 -1.22 4.86 -26.85 -0.13 -1.35 16 17 C -0.13 -1.37 6.88 -25.02 -0.17 -1.55 16 18 C -0.12 -1.17 6.94 -24.68 -0.17 -1.34 16 19 C -0.09 -1.07 6.45 -26.32 -0.17 -1.24 16 20 C -0.14 -2.89 6.90 -25.82 -0.18 -3.07 16 21 C -0.15 -2.65 8.03 -25.83 -0.21 -2.85 16 22 C -0.13 -2.69 5.68 -25.93 -0.15 -2.84 16 23 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 24 H 0.09 1.49 7.34 -51.93 -0.38 1.11 16 25 H 0.09 1.52 8.00 -51.93 -0.42 1.10 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 1.82 8.09 -51.93 -0.42 1.40 16 33 H 0.06 1.18 7.30 -51.93 -0.38 0.80 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 1.23 6.82 -51.93 -0.35 0.88 16 37 H 0.10 2.02 8.09 -51.93 -0.42 1.60 16 LS Contribution 303.05 15.07 4.57 4.57 Total: -1.00 -31.44 303.05 -7.06 -38.51 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -5.41 Total: 0.75 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -2.20 Total: -12.48 kcal Atomic # 7 Polarization: -26.90 SS G_CDS: 0.77 Total: -26.13 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.55 Total: -20.26 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.04 Total: -2.46 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.28 Total: 17.51 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.44 -7.06 -38.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816076716.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.994 kcal (2) G-P(sol) polarization free energy of solvation -31.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds