Wall clock time and date at job start Mon Mar 30 2020 07:05:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86808 * 119.99562 * 2 1
4 4 H 1.48499 * 109.47078 * 88.91205 * 3 2 1
5 5 H 1.48502 * 109.46799 * 208.91055 * 3 2 1
6 6 H 1.48496 * 109.47480 * 328.90930 * 3 2 1
7 7 C 1.37873 * 120.00217 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00193 * 355.12316 * 7 2 1
9 9 C 1.50703 * 119.99850 * 175.12620 * 7 2 1
10 10 O 1.45198 * 112.84956 * 297.05984 * 9 7 2
11 11 C 1.34796 * 117.00441 * 294.72971 * 10 9 7
12 12 O 1.21534 * 119.99472 * 2.71180 * 11 10 9
13 13 C 1.47147 * 120.00248 * 182.71440 * 11 10 9
14 14 F 1.35103 * 120.00109 * 4.38392 * 13 11 10
15 15 C 1.33195 * 120.00147 * 184.38531 * 13 11 10
16 16 C 1.51451 * 126.34096 * 4.75800 * 15 13 11
17 17 C 1.54275 * 106.85241 * 180.24146 * 16 15 13
18 18 C 1.54984 * 103.66288 * 23.48662 * 17 16 15
19 19 C 1.51843 * 126.34434 * 185.07079 * 15 13 11
20 20 C 1.53788 * 113.61102 * 165.86918 * 9 7 2
21 21 C 1.53956 * 87.01471 * 220.04566 * 20 9 7
22 22 C 1.53772 * 87.11273 * 25.36389 * 21 20 9
23 23 H 0.96999 * 120.00046 * 0.02562 * 1 2 3
24 24 H 1.09001 * 109.98532 * 299.73166 * 16 15 13
25 25 H 1.09004 * 109.98086 * 61.03381 * 16 15 13
26 26 H 1.08998 * 110.79644 * 264.85950 * 17 16 15
27 27 H 1.09002 * 110.43227 * 141.93447 * 17 16 15
28 28 H 1.08998 * 110.83868 * 204.49101 * 18 17 16
29 29 H 1.08995 * 110.83470 * 80.90536 * 18 17 16
30 30 H 1.08995 * 110.44449 * 274.92648 * 19 15 13
31 31 H 1.09004 * 110.43786 * 37.32742 * 19 15 13
32 32 H 1.08992 * 113.61543 * 334.56193 * 20 9 7
33 33 H 1.09001 * 113.61477 * 105.46768 * 20 9 7
34 34 H 1.09002 * 113.53817 * 270.80955 * 21 20 9
35 35 H 1.09002 * 113.74245 * 139.94413 * 21 20 9
36 36 H 1.09004 * 113.61304 * 220.09069 * 22 21 20
37 37 H 1.08999 * 113.69218 * 89.19804 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6179 0.0000
4 1 2.4735 2.0599 1.3998
5 1 3.5580 1.4338 -0.6769
6 1 1.4582 2.6460 -0.7230
7 6 2.0045 -1.1940 0.0005
8 1 1.4675 -2.1276 0.0805
9 6 3.5075 -1.1963 -0.1104
10 8 3.9811 -0.6402 -1.3652
11 6 3.6712 -1.3157 -2.4898
12 8 2.9813 -2.3143 -2.4280
13 6 4.1681 -0.8440 -3.7920
14 9 5.0069 0.2133 -3.8523
15 6 3.7910 -1.4595 -4.9114
16 6 2.7848 -2.5861 -5.0208
17 6 2.6949 -2.9620 -6.5144
18 6 4.0486 -2.4803 -7.0952
19 6 4.2951 -1.1661 -6.3133
20 6 4.1493 -2.5477 0.2458
21 6 5.2524 -1.7447 0.9590
22 6 4.2173 -0.6198 1.1259
23 1 -0.4850 0.8400 -0.0004
24 1 3.1210 -3.4439 -4.4383
25 1 1.8107 -2.2516 -4.6637
26 1 1.8656 -2.4429 -6.9948
27 1 2.5909 -4.0409 -6.6297
28 1 3.9644 -2.2853 -8.1643
29 1 4.8371 -3.2052 -6.8932
30 1 3.7297 -0.3471 -6.7576
31 1 5.3584 -0.9267 -6.2931
32 1 3.5449 -3.1538 0.9205
33 1 4.5046 -3.1044 -0.6214
34 1 6.0860 -1.4781 0.3092
35 1 5.5751 -2.1846 1.9026
36 1 4.6274 0.3778 0.9683
37 1 3.6309 -0.6965 2.0415
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000816076716.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:05:07
Heat of formation + Delta-G solvation = -113.687814 kcal
Electronic energy + Delta-G solvation = -21393.056368 eV
Core-core repulsion = 18050.243847 eV
Total energy + Delta-G solvation = -3342.812520 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 268.126 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-49.90525 -41.52882 -39.60699 -38.48531 -36.20536 -34.61342 -32.43533 -29.83850
-29.11453 -27.05680 -26.67875 -24.34824 -23.00360 -21.74433 -20.28133 -20.00034
-19.45846 -18.28906 -17.56875 -17.40587 -16.94772 -16.84931 -16.27173 -15.99264
-15.57374 -15.24752 -14.91022 -14.45940 -14.27822 -13.79741 -13.52544 -13.33224
-13.28249 -13.20695 -13.00081 -12.62280 -12.24872 -12.12859 -12.07936 -12.02843
-11.91865 -11.68521 -11.51053 -11.29727 -11.03485 -10.67524 -10.45200 -10.01604
-8.43584 -6.53178 -0.07896 1.26139 1.27425 1.49995 1.74054 1.84464
2.28913 2.92302 3.07791 3.36244 3.63482 3.79101 3.87912 3.95504
4.09756 4.12133 4.22364 4.39253 4.40572 4.60939 4.72552 4.77438
4.86198 4.90498 4.96407 4.99715 5.03469 5.04047 5.10023 5.19491
5.22971 5.31424 5.41122 5.48941 5.55509 5.73918 6.20453 6.55077
6.92156 7.19079 8.71280
Molecular weight = 268.13amu
Principal moments of inertia in cm(-1)
A = 0.021148 B = 0.006953 C = 0.006570
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1323.666871 B = 4026.220298 C = 4260.626141
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.931 5.931
2 C 0.032 3.968
3 Si 0.915 3.085
4 H -0.253 1.253
5 H -0.226 1.226
6 H -0.294 1.294
7 C -0.514 4.514
8 H 0.035 0.965
9 C 0.170 3.830
10 O -0.353 6.353
11 C 0.479 3.521
12 O -0.497 6.497
13 C -0.017 4.017
14 F -0.132 7.132
15 C -0.056 4.056
16 C -0.091 4.091
17 C -0.119 4.119
18 C -0.111 4.111
19 C -0.093 4.093
20 C -0.139 4.139
21 C -0.118 4.118
22 C -0.128 4.128
23 H 0.268 0.732
24 H 0.081 0.919
25 H 0.064 0.936
26 H 0.080 0.920
27 H 0.087 0.913
28 H 0.104 0.896
29 H 0.078 0.922
30 H 0.106 0.894
31 H 0.092 0.908
32 H 0.083 0.917
33 H 0.052 0.948
34 H 0.085 0.915
35 H 0.096 0.904
36 H 0.067 0.933
37 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.827 -2.521 -11.959 17.007
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.570 5.570
2 C -0.168 4.168
3 Si 0.738 3.262
4 H -0.178 1.178
5 H -0.149 1.149
6 H -0.221 1.221
7 C -0.551 4.551
8 H 0.053 0.947
9 C 0.136 3.864
10 O -0.271 6.271
11 C 0.323 3.677
12 O -0.387 6.387
13 C -0.037 4.037
14 F -0.111 7.111
15 C -0.058 4.058
16 C -0.128 4.128
17 C -0.157 4.157
18 C -0.148 4.148
19 C -0.130 4.130
20 C -0.177 4.177
21 C -0.155 4.155
22 C -0.165 4.165
23 H 0.077 0.923
24 H 0.099 0.901
25 H 0.082 0.918
26 H 0.099 0.901
27 H 0.106 0.894
28 H 0.123 0.877
29 H 0.097 0.903
30 H 0.124 0.876
31 H 0.111 0.889
32 H 0.102 0.898
33 H 0.071 0.929
34 H 0.103 0.897
35 H 0.115 0.885
36 H 0.085 0.915
37 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges 11.503 -2.686 -11.870 16.746
hybrid contribution -0.535 0.935 0.511 1.192
sum 10.968 -1.751 -11.359 15.887
Atomic orbital electron populations
1.70065 1.08218 1.28331 1.50343 1.25807 0.95286 1.02960 0.92774
0.86266 0.81124 0.78707 0.80069 1.17794 1.14885 1.22105 1.21144
0.90521 0.93105 1.50377 0.94661 1.21339 0.92103 0.93933 0.79070
1.86646 1.71713 1.52588 1.16117 1.21423 0.78479 0.82295 0.85523
1.90804 1.34836 1.25648 1.87412 1.18084 1.01353 0.93080 0.91207
1.91452 1.69274 1.53696 1.96709 1.23553 0.93400 0.94223 0.94597
1.21314 0.96339 0.95605 0.99549 1.22471 0.98911 1.02558 0.91720
1.22553 0.96902 0.94819 1.00561 1.21709 1.02452 1.00850 0.87981
1.23271 0.98061 0.96235 1.00100 1.22831 0.95638 0.95587 1.01403
1.23229 0.97627 0.99071 0.96616 0.92268 0.90069 0.91800 0.90097
0.89443 0.87748 0.90311 0.87552 0.88918 0.89811 0.92912 0.89672
0.88523 0.91482 0.88330
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -59.37 13.96 21.45 0.30 -59.07 16
2 C 0.03 1.92 5.47 84.65 0.46 2.38 16
3 Si 0.92 45.52 25.16 68.60 1.73 47.25 16
4 H -0.25 -11.61 7.11 99.48 0.71 -10.91 16
5 H -0.23 -10.90 5.40 99.48 0.54 -10.36 16
6 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16
7 C -0.51 -30.48 7.98 25.60 0.20 -30.27 16
8 H 0.04 2.36 8.06 -2.91 -0.02 2.34 16
9 C 0.17 8.31 0.10 -11.01 0.00 8.31 16
10 O -0.35 -17.36 7.71 -57.08 -0.44 -17.80 16
11 C 0.48 22.47 7.28 70.16 0.51 22.98 16
12 O -0.50 -25.11 12.31 19.72 0.24 -24.87 16
13 C -0.02 -0.65 7.42 23.47 0.17 -0.47 16
14 F -0.13 -4.90 16.99 44.97 0.76 -4.14 16
15 C -0.06 -1.70 6.15 -16.98 -0.10 -1.80 16
16 C -0.09 -2.69 4.86 30.52 0.15 -2.54 16
17 C -0.12 -2.25 6.88 31.71 0.22 -2.03 16
18 C -0.11 -1.66 6.94 31.92 0.22 -1.44 16
19 C -0.09 -1.86 6.45 30.86 0.20 -1.66 16
20 C -0.14 -5.83 6.90 31.18 0.22 -5.61 16
21 C -0.12 -3.96 8.03 31.18 0.25 -3.71 16
22 C -0.13 -5.21 5.68 31.12 0.18 -5.04 16
23 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16
24 H 0.08 2.63 7.34 -2.39 -0.02 2.61 16
25 H 0.06 2.24 8.00 -2.39 -0.02 2.23 16
26 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16
27 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16
28 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16
29 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16
30 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16
31 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16
32 H 0.08 3.52 8.09 -2.39 -0.02 3.50 16
33 H 0.05 2.22 7.30 -2.39 -0.02 2.20 16
34 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16
35 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16
36 H 0.07 2.62 6.82 -2.39 -0.02 2.60 16
37 H 0.10 3.95 8.09 -2.39 -0.02 3.93 16
Total: -1.00 -72.69 303.05 6.16 -66.53
By element:
Atomic # 1 Polarization: 12.12 SS G_CDS: 0.89 Total: 13.01 kcal
Atomic # 6 Polarization: -23.60 SS G_CDS: 2.68 Total: -20.92 kcal
Atomic # 7 Polarization: -59.37 SS G_CDS: 0.30 Total: -59.07 kcal
Atomic # 8 Polarization: -42.47 SS G_CDS: -0.20 Total: -42.66 kcal
Atomic # 9 Polarization: -4.90 SS G_CDS: 0.76 Total: -4.14 kcal
Atomic # 14 Polarization: 45.52 SS G_CDS: 1.73 Total: 47.25 kcal
Total: -72.69 6.16 -66.53 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000816076716.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -47.159 kcal
(2) G-P(sol) polarization free energy of solvation -72.690 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.849 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.161 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.529 kcal
(6) G-S(sol) free energy of system = (1) + (5) -113.688 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds