Wall clock time and date at job start Mon Mar 30 2020 07:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99562 * 2 1 4 4 H 1.48499 * 109.47078 * 88.91205 * 3 2 1 5 5 H 1.48502 * 109.46799 * 208.91055 * 3 2 1 6 6 H 1.48496 * 109.47480 * 328.90930 * 3 2 1 7 7 C 1.37873 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00193 * 355.12316 * 7 2 1 9 9 C 1.50703 * 119.99850 * 175.12620 * 7 2 1 10 10 O 1.45198 * 112.84956 * 297.05984 * 9 7 2 11 11 C 1.34796 * 117.00441 * 294.72971 * 10 9 7 12 12 O 1.21534 * 119.99472 * 2.71180 * 11 10 9 13 13 C 1.47147 * 120.00248 * 182.71440 * 11 10 9 14 14 F 1.35103 * 120.00109 * 4.38392 * 13 11 10 15 15 C 1.33195 * 120.00147 * 184.38531 * 13 11 10 16 16 C 1.51451 * 126.34096 * 4.75800 * 15 13 11 17 17 C 1.54275 * 106.85241 * 180.24146 * 16 15 13 18 18 C 1.54984 * 103.66288 * 23.48662 * 17 16 15 19 19 C 1.51843 * 126.34434 * 185.07079 * 15 13 11 20 20 C 1.53788 * 113.61102 * 165.86918 * 9 7 2 21 21 C 1.53956 * 87.01471 * 220.04566 * 20 9 7 22 22 C 1.53772 * 87.11273 * 25.36389 * 21 20 9 23 23 H 0.96999 * 120.00046 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.98532 * 299.73166 * 16 15 13 25 25 H 1.09004 * 109.98086 * 61.03381 * 16 15 13 26 26 H 1.08998 * 110.79644 * 264.85950 * 17 16 15 27 27 H 1.09002 * 110.43227 * 141.93447 * 17 16 15 28 28 H 1.08998 * 110.83868 * 204.49101 * 18 17 16 29 29 H 1.08995 * 110.83470 * 80.90536 * 18 17 16 30 30 H 1.08995 * 110.44449 * 274.92648 * 19 15 13 31 31 H 1.09004 * 110.43786 * 37.32742 * 19 15 13 32 32 H 1.08992 * 113.61543 * 334.56193 * 20 9 7 33 33 H 1.09001 * 113.61477 * 105.46768 * 20 9 7 34 34 H 1.09002 * 113.53817 * 270.80955 * 21 20 9 35 35 H 1.09002 * 113.74245 * 139.94413 * 21 20 9 36 36 H 1.09004 * 113.61304 * 220.09069 * 22 21 20 37 37 H 1.08999 * 113.69218 * 89.19804 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4735 2.0599 1.3998 5 1 3.5580 1.4338 -0.6769 6 1 1.4582 2.6460 -0.7230 7 6 2.0045 -1.1940 0.0005 8 1 1.4675 -2.1276 0.0805 9 6 3.5075 -1.1963 -0.1104 10 8 3.9811 -0.6402 -1.3652 11 6 3.6712 -1.3157 -2.4898 12 8 2.9813 -2.3143 -2.4280 13 6 4.1681 -0.8440 -3.7920 14 9 5.0069 0.2133 -3.8523 15 6 3.7910 -1.4595 -4.9114 16 6 2.7848 -2.5861 -5.0208 17 6 2.6949 -2.9620 -6.5144 18 6 4.0486 -2.4803 -7.0952 19 6 4.2951 -1.1661 -6.3133 20 6 4.1493 -2.5477 0.2458 21 6 5.2524 -1.7447 0.9590 22 6 4.2173 -0.6198 1.1259 23 1 -0.4850 0.8400 -0.0004 24 1 3.1210 -3.4439 -4.4383 25 1 1.8107 -2.2516 -4.6637 26 1 1.8656 -2.4429 -6.9948 27 1 2.5909 -4.0409 -6.6297 28 1 3.9644 -2.2853 -8.1643 29 1 4.8371 -3.2052 -6.8932 30 1 3.7297 -0.3471 -6.7576 31 1 5.3584 -0.9267 -6.2931 32 1 3.5449 -3.1538 0.9205 33 1 4.5046 -3.1044 -0.6214 34 1 6.0860 -1.4781 0.3092 35 1 5.5751 -2.1846 1.9026 36 1 4.6274 0.3778 0.9683 37 1 3.6309 -0.6965 2.0415 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816076716.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:07 Heat of formation + Delta-G solvation = -113.687814 kcal Electronic energy + Delta-G solvation = -21393.056368 eV Core-core repulsion = 18050.243847 eV Total energy + Delta-G solvation = -3342.812520 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.90525 -41.52882 -39.60699 -38.48531 -36.20536 -34.61342 -32.43533 -29.83850 -29.11453 -27.05680 -26.67875 -24.34824 -23.00360 -21.74433 -20.28133 -20.00034 -19.45846 -18.28906 -17.56875 -17.40587 -16.94772 -16.84931 -16.27173 -15.99264 -15.57374 -15.24752 -14.91022 -14.45940 -14.27822 -13.79741 -13.52544 -13.33224 -13.28249 -13.20695 -13.00081 -12.62280 -12.24872 -12.12859 -12.07936 -12.02843 -11.91865 -11.68521 -11.51053 -11.29727 -11.03485 -10.67524 -10.45200 -10.01604 -8.43584 -6.53178 -0.07896 1.26139 1.27425 1.49995 1.74054 1.84464 2.28913 2.92302 3.07791 3.36244 3.63482 3.79101 3.87912 3.95504 4.09756 4.12133 4.22364 4.39253 4.40572 4.60939 4.72552 4.77438 4.86198 4.90498 4.96407 4.99715 5.03469 5.04047 5.10023 5.19491 5.22971 5.31424 5.41122 5.48941 5.55509 5.73918 6.20453 6.55077 6.92156 7.19079 8.71280 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.021148 B = 0.006953 C = 0.006570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.666871 B = 4026.220298 C = 4260.626141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.032 3.968 3 Si 0.915 3.085 4 H -0.253 1.253 5 H -0.226 1.226 6 H -0.294 1.294 7 C -0.514 4.514 8 H 0.035 0.965 9 C 0.170 3.830 10 O -0.353 6.353 11 C 0.479 3.521 12 O -0.497 6.497 13 C -0.017 4.017 14 F -0.132 7.132 15 C -0.056 4.056 16 C -0.091 4.091 17 C -0.119 4.119 18 C -0.111 4.111 19 C -0.093 4.093 20 C -0.139 4.139 21 C -0.118 4.118 22 C -0.128 4.128 23 H 0.268 0.732 24 H 0.081 0.919 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.067 0.933 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.827 -2.521 -11.959 17.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.168 4.168 3 Si 0.738 3.262 4 H -0.178 1.178 5 H -0.149 1.149 6 H -0.221 1.221 7 C -0.551 4.551 8 H 0.053 0.947 9 C 0.136 3.864 10 O -0.271 6.271 11 C 0.323 3.677 12 O -0.387 6.387 13 C -0.037 4.037 14 F -0.111 7.111 15 C -0.058 4.058 16 C -0.128 4.128 17 C -0.157 4.157 18 C -0.148 4.148 19 C -0.130 4.130 20 C -0.177 4.177 21 C -0.155 4.155 22 C -0.165 4.165 23 H 0.077 0.923 24 H 0.099 0.901 25 H 0.082 0.918 26 H 0.099 0.901 27 H 0.106 0.894 28 H 0.123 0.877 29 H 0.097 0.903 30 H 0.124 0.876 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.115 0.885 36 H 0.085 0.915 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 11.503 -2.686 -11.870 16.746 hybrid contribution -0.535 0.935 0.511 1.192 sum 10.968 -1.751 -11.359 15.887 Atomic orbital electron populations 1.70065 1.08218 1.28331 1.50343 1.25807 0.95286 1.02960 0.92774 0.86266 0.81124 0.78707 0.80069 1.17794 1.14885 1.22105 1.21144 0.90521 0.93105 1.50377 0.94661 1.21339 0.92103 0.93933 0.79070 1.86646 1.71713 1.52588 1.16117 1.21423 0.78479 0.82295 0.85523 1.90804 1.34836 1.25648 1.87412 1.18084 1.01353 0.93080 0.91207 1.91452 1.69274 1.53696 1.96709 1.23553 0.93400 0.94223 0.94597 1.21314 0.96339 0.95605 0.99549 1.22471 0.98911 1.02558 0.91720 1.22553 0.96902 0.94819 1.00561 1.21709 1.02452 1.00850 0.87981 1.23271 0.98061 0.96235 1.00100 1.22831 0.95638 0.95587 1.01403 1.23229 0.97627 0.99071 0.96616 0.92268 0.90069 0.91800 0.90097 0.89443 0.87748 0.90311 0.87552 0.88918 0.89811 0.92912 0.89672 0.88523 0.91482 0.88330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.37 13.96 21.45 0.30 -59.07 16 2 C 0.03 1.92 5.47 84.65 0.46 2.38 16 3 Si 0.92 45.52 25.16 68.60 1.73 47.25 16 4 H -0.25 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.23 -10.90 5.40 99.48 0.54 -10.36 16 6 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 7 C -0.51 -30.48 7.98 25.60 0.20 -30.27 16 8 H 0.04 2.36 8.06 -2.91 -0.02 2.34 16 9 C 0.17 8.31 0.10 -11.01 0.00 8.31 16 10 O -0.35 -17.36 7.71 -57.08 -0.44 -17.80 16 11 C 0.48 22.47 7.28 70.16 0.51 22.98 16 12 O -0.50 -25.11 12.31 19.72 0.24 -24.87 16 13 C -0.02 -0.65 7.42 23.47 0.17 -0.47 16 14 F -0.13 -4.90 16.99 44.97 0.76 -4.14 16 15 C -0.06 -1.70 6.15 -16.98 -0.10 -1.80 16 16 C -0.09 -2.69 4.86 30.52 0.15 -2.54 16 17 C -0.12 -2.25 6.88 31.71 0.22 -2.03 16 18 C -0.11 -1.66 6.94 31.92 0.22 -1.44 16 19 C -0.09 -1.86 6.45 30.86 0.20 -1.66 16 20 C -0.14 -5.83 6.90 31.18 0.22 -5.61 16 21 C -0.12 -3.96 8.03 31.18 0.25 -3.71 16 22 C -0.13 -5.21 5.68 31.12 0.18 -5.04 16 23 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 24 H 0.08 2.63 7.34 -2.39 -0.02 2.61 16 25 H 0.06 2.24 8.00 -2.39 -0.02 2.23 16 26 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.08 3.52 8.09 -2.39 -0.02 3.50 16 33 H 0.05 2.22 7.30 -2.39 -0.02 2.20 16 34 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.07 2.62 6.82 -2.39 -0.02 2.60 16 37 H 0.10 3.95 8.09 -2.39 -0.02 3.93 16 Total: -1.00 -72.69 303.05 6.16 -66.53 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.89 Total: 13.01 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: 2.68 Total: -20.92 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: 0.30 Total: -59.07 kcal Atomic # 8 Polarization: -42.47 SS G_CDS: -0.20 Total: -42.66 kcal Atomic # 9 Polarization: -4.90 SS G_CDS: 0.76 Total: -4.14 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.73 Total: 47.25 kcal Total: -72.69 6.16 -66.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816076716.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.159 kcal (2) G-P(sol) polarization free energy of solvation -72.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds