Wall clock time and date at job start Mon Mar 30 2020 07:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39532 * 120.14850 * 19.86639 * 3 2 1 5 5 C 1.37972 * 119.85977 * 180.02562 * 4 3 2 6 6 C 1.38341 * 120.13872 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.85202 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47086 * 90.00151 * 7 6 5 9 9 C 1.46904 * 110.99779 * 179.97438 * 8 7 6 10 10 C 1.52996 * 109.46858 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47753 * 305.00128 * 10 9 8 12 12 C 1.47204 * 109.47042 * 64.99895 * 10 9 8 13 13 N 8.72952 * 148.20665 * 138.84117 * 2 1 3 14 14 C 1.52996 * 109.47153 * 184.99851 * 10 9 8 15 15 C 1.50702 * 109.47159 * 175.00123 * 14 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.38339 * 120.29034 * 0.25610 * 6 5 4 24 24 C 1.37974 * 120.13866 * 359.48477 * 23 6 5 25 25 H 4.52072 * 14.02033 * 359.97438 * 4 2 1 26 26 H 1.08003 * 120.06977 * 359.97438 * 4 3 2 27 27 H 1.07999 * 119.92796 * 179.97438 * 5 4 3 28 28 H 1.09003 * 109.47324 * 329.99970 * 7 6 5 29 29 H 1.09004 * 109.47052 * 210.00129 * 7 6 5 30 30 H 1.00897 * 111.00127 * 56.04185 * 8 7 6 31 31 H 1.08997 * 109.46933 * 59.99775 * 9 8 7 32 32 H 1.08996 * 109.47325 * 299.99917 * 9 8 7 33 33 H 1.09004 * 109.47066 * 55.00326 * 14 10 9 34 34 H 1.08994 * 109.47405 * 295.00156 * 14 10 9 35 35 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 36 36 H 1.08001 * 119.93224 * 179.72485 * 23 6 5 37 37 H 1.08006 * 120.06799 * 180.23792 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3073 -1.1338 -0.4100 5 6 4.6870 -1.1268 -0.4072 6 6 5.3750 0.0016 0.0016 7 6 6.8821 0.0019 0.0027 8 7 7.3726 0.4733 -1.2993 9 6 8.8411 0.4875 -1.3348 10 6 9.3134 0.9823 -2.7034 11 1 8.8656 0.3694 -3.4857 12 6 8.9057 2.3850 -2.8854 13 7 8.5937 3.4627 -3.0270 14 6 10.8377 0.8795 -2.7847 15 6 11.2928 1.2500 -4.1728 16 1 10.5674 1.5311 -4.9219 17 6 12.6358 1.2361 -4.4846 18 7 13.5192 0.8941 -3.5723 19 14 13.2005 1.7027 -6.2029 20 1 12.0199 2.0452 -7.0360 21 1 14.1075 2.8761 -6.1243 22 1 13.9232 0.5586 -6.8144 23 6 4.6858 1.1276 0.4148 24 6 3.3061 1.1353 0.4116 25 1 -1.0500 -0.0012 0.0001 26 1 2.7712 -2.0158 -0.7282 27 1 5.2309 -2.0044 -0.7239 28 1 7.2456 -1.0097 0.1833 29 1 7.2447 0.6640 0.7890 30 1 6.9970 1.3836 -1.5192 31 1 9.2185 -0.5206 -1.1632 32 1 9.2170 1.1532 -0.5579 33 1 11.1453 -0.1423 -2.5621 34 1 11.2869 1.5599 -2.0614 35 1 14.4640 0.8840 -3.7918 36 1 5.2288 2.0038 0.7370 37 1 2.7691 2.0164 0.7308 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819338885.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:08 Heat of formation + Delta-G solvation = 88.910626 kcal Electronic energy + Delta-G solvation = -18089.093808 eV Core-core repulsion = 15218.128591 eV Total energy + Delta-G solvation = -2870.965217 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.64655 -37.47826 -35.57494 -34.15853 -33.40264 -31.86898 -31.19324 -30.25266 -27.06270 -25.12079 -22.89067 -22.67439 -22.04587 -21.52802 -19.17543 -16.86320 -16.69426 -16.29581 -15.85219 -15.50690 -14.94958 -14.85543 -14.35354 -13.77350 -13.63526 -13.31493 -13.25523 -13.02952 -12.62314 -12.30672 -12.12872 -11.82283 -11.44835 -11.39657 -11.27915 -11.22803 -11.04010 -10.76040 -10.68796 -10.52811 -10.28388 -9.58488 -9.23649 -9.15795 -8.67522 -8.47084 -8.34655 -6.10885 -4.13816 0.69542 1.21241 2.46991 2.74832 3.27920 3.36177 3.41028 3.57892 3.63735 3.74990 3.99635 4.33365 4.43538 4.65077 4.71749 4.77271 4.81185 5.17633 5.18950 5.27334 5.35145 5.43270 5.51275 5.58786 5.69461 5.83728 5.85756 6.11621 6.17147 6.25413 6.32696 6.42677 6.52607 6.72510 7.01703 7.24946 7.36089 7.42381 7.51531 7.84554 8.21929 8.38606 8.91039 9.51784 11.00035 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.037324 B = 0.002860 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.006178 B = 9787.729141 C = 9943.289556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.143 4.143 3 C 0.000 4.000 4 C -0.096 4.096 5 C -0.095 4.095 6 C -0.067 4.067 7 C 0.093 3.907 8 N -0.687 5.687 9 C 0.067 3.933 10 C 0.006 3.994 11 H 0.111 0.889 12 C 0.241 3.759 13 N -0.476 5.476 14 C 0.032 3.968 15 C -0.526 4.526 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.892 3.108 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.282 1.282 23 C -0.114 4.114 24 C -0.095 4.095 25 H 0.223 0.777 26 H 0.126 0.874 27 H 0.132 0.868 28 H 0.086 0.914 29 H 0.041 0.959 30 H 0.340 0.660 31 H 0.093 0.907 32 H 0.036 0.964 33 H 0.040 0.960 34 H 0.024 0.976 35 H 0.262 0.738 36 H 0.125 0.875 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.560 -5.597 10.262 22.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.001 4.001 4 C -0.114 4.114 5 C -0.114 4.114 6 C -0.067 4.067 7 C -0.035 4.035 8 N -0.318 5.318 9 C -0.063 4.063 10 C -0.016 4.016 11 H 0.129 0.871 12 C -0.075 4.075 13 N -0.152 5.152 14 C -0.007 4.007 15 C -0.564 4.564 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.208 1.208 23 C -0.132 4.132 24 C -0.113 4.113 25 H 0.240 0.760 26 H 0.144 0.856 27 H 0.150 0.850 28 H 0.105 0.895 29 H 0.059 0.941 30 H 0.158 0.842 31 H 0.111 0.889 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.143 0.857 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -19.864 -4.613 9.781 22.617 hybrid contribution 0.574 0.703 -0.410 0.995 sum -19.290 -3.910 9.371 21.799 Atomic orbital electron populations 1.24867 0.95767 0.99640 0.99997 1.20129 0.92115 1.01076 1.01012 1.15963 0.86459 0.95110 1.02521 1.21200 0.94189 0.97187 0.98812 1.21001 0.93376 0.98518 0.98484 1.19993 0.95661 0.93721 0.97347 1.20944 0.89924 1.01754 0.90903 1.60634 1.08766 1.33136 1.29223 1.22114 0.86021 1.02088 0.96084 1.19335 1.01418 0.83440 0.97415 0.87091 1.29103 0.91151 0.95188 0.92091 1.80815 1.11717 1.13064 1.09645 1.19169 0.84498 0.98884 0.98112 1.21188 0.92270 1.46361 0.96553 0.92445 1.24961 0.96822 0.95020 0.97241 1.69949 1.01676 1.47997 1.33412 0.86532 0.78821 0.78183 0.84528 1.19677 1.21010 1.20805 1.21022 0.93793 0.98118 1.00303 1.21138 0.94029 0.97146 0.98990 0.75998 0.85631 0.84998 0.89536 0.94126 0.84228 0.88868 0.94568 0.94160 0.95739 0.92850 0.85675 0.85760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.55 19.25 29.55 0.57 -0.98 16 2 C -0.14 -1.51 13.24 -38.84 -0.51 -2.02 16 3 C 0.00 0.00 5.72 -107.00 -0.61 -0.62 16 4 C -0.10 -0.97 9.75 -39.20 -0.38 -1.35 16 5 C -0.10 -0.96 9.68 -39.64 -0.38 -1.34 16 6 C -0.07 -0.70 5.40 -104.54 -0.56 -1.27 16 7 C 0.09 0.98 5.81 -4.97 -0.03 0.95 16 8 N -0.69 -8.79 6.49 -115.05 -0.75 -9.54 16 9 C 0.07 0.94 5.12 -3.82 -0.02 0.92 16 10 C 0.01 0.11 2.42 -93.41 -0.23 -0.12 16 11 H 0.11 1.94 8.14 -51.93 -0.42 1.52 16 12 C 0.24 4.85 12.96 -20.93 -0.27 4.57 16 13 N -0.48 -10.31 18.50 41.96 0.78 -9.54 16 14 C 0.03 0.73 4.42 -27.88 -0.12 0.61 16 15 C -0.53 -13.93 8.60 -34.44 -0.30 -14.23 16 16 H 0.06 1.53 7.59 -52.49 -0.40 1.13 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -25.41 13.29 55.43 0.74 -24.67 16 19 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C -0.11 -1.17 9.68 -39.64 -0.38 -1.55 16 24 C -0.10 -0.98 9.75 -39.19 -0.38 -1.36 16 25 H 0.22 0.95 7.80 -54.09 -0.42 0.53 16 26 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 27 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 28 H 0.09 0.82 8.08 -51.93 -0.42 0.40 16 29 H 0.04 0.41 8.08 -51.93 -0.42 -0.01 16 30 H 0.34 4.65 7.80 -39.29 -0.31 4.34 16 31 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 LS Contribution 337.00 15.07 5.08 5.08 Total: -1.00 -30.52 337.00 -7.80 -38.32 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -4.91 Total: 0.26 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -3.72 Total: -16.18 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: 0.77 Total: -43.75 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.52 -7.80 -38.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819338885.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.232 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds