Wall clock time and date at job start Mon Mar 30 2020 07:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39532 * 120.14850 * 19.86639 * 3 2 1 5 5 C 1.37972 * 119.85977 * 180.02562 * 4 3 2 6 6 C 1.38341 * 120.13872 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.85202 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47086 * 90.00151 * 7 6 5 9 9 C 1.46904 * 110.99779 * 179.97438 * 8 7 6 10 10 C 1.52996 * 109.46858 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47753 * 305.00128 * 10 9 8 12 12 C 1.47204 * 109.47042 * 64.99895 * 10 9 8 13 13 N 8.72952 * 148.20665 * 138.84117 * 2 1 3 14 14 C 1.52996 * 109.47153 * 184.99851 * 10 9 8 15 15 C 1.50702 * 109.47159 * 175.00123 * 14 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.38339 * 120.29034 * 0.25610 * 6 5 4 24 24 C 1.37974 * 120.13866 * 359.48477 * 23 6 5 25 25 H 4.52072 * 14.02033 * 359.97438 * 4 2 1 26 26 H 1.08003 * 120.06977 * 359.97438 * 4 3 2 27 27 H 1.07999 * 119.92796 * 179.97438 * 5 4 3 28 28 H 1.09003 * 109.47324 * 329.99970 * 7 6 5 29 29 H 1.09004 * 109.47052 * 210.00129 * 7 6 5 30 30 H 1.00897 * 111.00127 * 56.04185 * 8 7 6 31 31 H 1.08997 * 109.46933 * 59.99775 * 9 8 7 32 32 H 1.08996 * 109.47325 * 299.99917 * 9 8 7 33 33 H 1.09004 * 109.47066 * 55.00326 * 14 10 9 34 34 H 1.08994 * 109.47405 * 295.00156 * 14 10 9 35 35 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 36 36 H 1.08001 * 119.93224 * 179.72485 * 23 6 5 37 37 H 1.08006 * 120.06799 * 180.23792 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3073 -1.1338 -0.4100 5 6 4.6870 -1.1268 -0.4072 6 6 5.3750 0.0016 0.0016 7 6 6.8821 0.0019 0.0027 8 7 7.3726 0.4733 -1.2993 9 6 8.8411 0.4875 -1.3348 10 6 9.3134 0.9823 -2.7034 11 1 8.8656 0.3694 -3.4857 12 6 8.9057 2.3850 -2.8854 13 7 8.5937 3.4627 -3.0270 14 6 10.8377 0.8795 -2.7847 15 6 11.2928 1.2500 -4.1728 16 1 10.5674 1.5311 -4.9219 17 6 12.6358 1.2361 -4.4846 18 7 13.5192 0.8941 -3.5723 19 14 13.2005 1.7027 -6.2029 20 1 12.0199 2.0452 -7.0360 21 1 14.1075 2.8761 -6.1243 22 1 13.9232 0.5586 -6.8144 23 6 4.6858 1.1276 0.4148 24 6 3.3061 1.1353 0.4116 25 1 -1.0500 -0.0012 0.0001 26 1 2.7712 -2.0158 -0.7282 27 1 5.2309 -2.0044 -0.7239 28 1 7.2456 -1.0097 0.1833 29 1 7.2447 0.6640 0.7890 30 1 6.9970 1.3836 -1.5192 31 1 9.2185 -0.5206 -1.1632 32 1 9.2170 1.1532 -0.5579 33 1 11.1453 -0.1423 -2.5621 34 1 11.2869 1.5599 -2.0614 35 1 14.4640 0.8840 -3.7918 36 1 5.2288 2.0038 0.7370 37 1 2.7691 2.0164 0.7308 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819338885.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:08 Heat of formation + Delta-G solvation = 72.369726 kcal Electronic energy + Delta-G solvation = -18089.811076 eV Core-core repulsion = 15218.128591 eV Total energy + Delta-G solvation = -2871.682484 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.41125 -38.86017 -36.79804 -35.59660 -34.69822 -33.33077 -31.93727 -31.29711 -28.54689 -26.34915 -24.05538 -23.64519 -23.51280 -22.51838 -19.85507 -18.56679 -18.24500 -17.36208 -16.73237 -16.58771 -16.29426 -15.80131 -15.69329 -14.85810 -14.75632 -14.37924 -14.36419 -14.30882 -13.96458 -13.87934 -13.49911 -13.19267 -13.05302 -12.68252 -12.50787 -12.38474 -12.24609 -12.12686 -12.00277 -11.93066 -11.39210 -11.38175 -11.12990 -10.55016 -9.91413 -9.51472 -9.27466 -8.19424 -6.27101 -0.05995 0.45601 1.39033 1.42221 1.52504 1.78229 1.97174 1.99295 2.03063 2.41736 2.96222 3.15962 3.27428 3.36825 3.40157 3.88294 3.93299 4.05354 4.18649 4.40892 4.46567 4.48197 4.63668 4.72748 4.75054 4.84506 4.97936 5.02244 5.11818 5.12454 5.44789 5.48801 5.50990 5.64125 5.65456 5.80308 5.94738 6.03096 6.22084 6.30566 6.58078 6.75979 6.88253 7.41377 8.91581 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.037324 B = 0.002860 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.006178 B = 9787.729141 C = 9943.289556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.198 4.198 3 C -0.013 4.013 4 C -0.105 4.105 5 C -0.098 4.098 6 C -0.078 4.078 7 C 0.096 3.904 8 N -0.688 5.688 9 C 0.078 3.922 10 C 0.017 3.983 11 H 0.122 0.878 12 C 0.251 3.749 13 N -0.505 5.505 14 C 0.038 3.962 15 C -0.538 4.538 16 H 0.052 0.948 17 C 0.011 3.989 18 N -0.923 5.923 19 Si 0.948 3.052 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.272 1.272 23 C -0.120 4.120 24 C -0.107 4.107 25 H 0.260 0.740 26 H 0.138 0.862 27 H 0.146 0.854 28 H 0.100 0.900 29 H 0.047 0.953 30 H 0.334 0.666 31 H 0.111 0.889 32 H 0.036 0.964 33 H 0.039 0.961 34 H 0.001 0.999 35 H 0.264 0.736 36 H 0.133 0.867 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.864 -6.335 10.212 24.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.198 4.198 3 C -0.013 4.013 4 C -0.123 4.123 5 C -0.116 4.116 6 C -0.078 4.078 7 C -0.032 4.032 8 N -0.318 5.318 9 C -0.052 4.052 10 C -0.004 4.004 11 H 0.140 0.860 12 C -0.065 4.065 13 N -0.183 5.183 14 C -0.001 4.001 15 C -0.576 4.576 16 H 0.071 0.929 17 C -0.188 4.188 18 N -0.563 5.563 19 Si 0.774 3.226 20 H -0.195 1.195 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.138 4.138 24 C -0.125 4.125 25 H 0.276 0.724 26 H 0.156 0.844 27 H 0.164 0.836 28 H 0.119 0.881 29 H 0.065 0.935 30 H 0.151 0.849 31 H 0.129 0.871 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.020 0.980 35 H 0.073 0.927 36 H 0.151 0.849 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -21.179 -5.359 9.734 23.917 hybrid contribution 0.871 0.928 -0.372 1.326 sum -20.308 -4.430 9.362 22.797 Atomic orbital electron populations 1.25790 0.96550 0.97356 0.97540 1.20519 0.92812 1.03264 1.03175 1.16226 0.87225 0.95467 1.02385 1.21410 0.94429 0.97561 0.98854 1.21202 0.93498 0.98872 0.98067 1.20049 0.95656 0.94059 0.98037 1.20983 0.89914 1.02522 0.89761 1.60616 1.07570 1.32747 1.30886 1.21962 0.87085 1.02776 0.93366 1.19251 0.98300 0.82586 1.00306 0.86039 1.29486 0.90419 0.95441 0.91124 1.80814 1.12636 1.13965 1.10845 1.18995 0.87578 0.97894 0.95623 1.21592 0.92325 1.45602 0.98086 0.92932 1.25706 0.97253 0.95321 1.00548 1.70034 1.01955 1.49237 1.35046 0.85653 0.78282 0.77989 0.80696 1.19509 1.21146 1.19769 1.21185 0.93936 0.98473 1.00226 1.21316 0.94256 0.97577 0.99330 0.72434 0.84395 0.83641 0.88149 0.93479 0.84896 0.87131 0.94557 0.94299 0.98029 0.92720 0.84878 0.84921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 19.25 74.32 1.43 -0.84 16 2 C -0.20 -4.00 13.24 30.01 0.40 -3.60 16 3 C -0.01 -0.28 5.72 -21.41 -0.12 -0.40 16 4 C -0.10 -2.04 9.75 22.52 0.22 -1.82 16 5 C -0.10 -1.85 9.68 22.23 0.22 -1.63 16 6 C -0.08 -1.54 5.40 -19.81 -0.11 -1.65 16 7 C 0.10 1.84 5.81 85.56 0.50 2.34 16 8 N -0.69 -16.44 6.49 -517.92 -3.36 -19.80 16 9 C 0.08 2.08 5.12 86.30 0.44 2.52 16 10 C 0.02 0.61 2.42 -12.60 -0.03 0.58 16 11 H 0.12 4.05 8.14 -2.39 -0.02 4.03 16 12 C 0.25 9.95 12.96 89.50 1.16 11.11 16 13 N -0.51 -21.75 18.50 19.95 0.37 -21.39 16 14 C 0.04 1.72 4.42 29.85 0.13 1.85 16 15 C -0.54 -28.38 8.60 25.60 0.22 -28.16 16 16 H 0.05 2.77 7.59 -2.91 -0.02 2.74 16 17 C 0.01 0.58 5.46 84.66 0.46 1.04 16 18 N -0.92 -52.68 13.29 21.45 0.28 -52.39 16 19 Si 0.95 43.46 29.54 68.60 2.03 45.48 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 21 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 23 C -0.12 -2.39 9.68 22.23 0.22 -2.17 16 24 C -0.11 -2.18 9.75 22.52 0.22 -1.96 16 25 H 0.26 1.31 7.80 -4.42 -0.03 1.27 16 26 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 27 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 28 H 0.10 1.65 8.08 -2.39 -0.02 1.63 16 29 H 0.05 0.86 8.08 -2.38 -0.02 0.84 16 30 H 0.33 8.72 7.80 -89.70 -0.70 8.02 16 31 H 0.11 2.60 8.14 -2.39 -0.02 2.59 16 32 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 34 H 0.00 0.06 8.14 -2.39 -0.02 0.05 16 35 H 0.26 14.27 8.31 -92.70 -0.77 13.50 16 36 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 37 H 0.13 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -64.68 337.00 5.04 -59.64 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 0.36 Total: 11.26 kcal Atomic # 6 Polarization: -28.16 SS G_CDS: 5.35 Total: -22.80 kcal Atomic # 7 Polarization: -90.87 SS G_CDS: -2.71 Total: -93.58 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -64.68 5.04 -59.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819338885.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.010 kcal (2) G-P(sol) polarization free energy of solvation -64.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds