Wall clock time and date at job start Mon Mar 30 2020 06:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38336 * 119.81935 * 2 1 4 4 C 1.38183 * 120.18104 * 180.02562 * 3 2 1 5 5 F 1.35099 * 120.09195 * 179.97438 * 4 3 2 6 6 C 1.39853 * 119.81490 * 359.97438 * 4 3 2 7 7 C 1.47458 * 120.17529 * 179.97438 * 6 4 3 8 8 N 1.29745 * 119.99957 * 180.02562 * 7 6 4 9 9 N 1.40098 * 120.00083 * 180.02562 * 8 7 6 10 10 C 1.46503 * 120.00106 * 180.02562 * 9 8 7 11 11 H 1.09010 * 109.47009 * 329.99719 * 10 9 8 12 12 C 1.53003 * 109.47469 * 89.99297 * 10 9 8 13 13 C 1.50699 * 109.47268 * 209.99938 * 10 9 8 14 14 H 1.07997 * 119.99728 * 325.65356 * 13 10 9 15 15 C 1.37876 * 119.99989 * 145.65748 * 13 10 9 16 16 N 1.31516 * 119.99565 * 177.30882 * 15 13 10 17 17 Si 1.86795 * 120.00342 * 357.31023 * 15 13 10 18 18 H 1.48501 * 109.46989 * 274.92304 * 17 15 13 19 19 H 1.48502 * 109.47174 * 34.92145 * 17 15 13 20 20 H 1.48500 * 109.47093 * 154.91895 * 17 15 13 21 21 C 1.39852 * 119.64513 * 0.25141 * 6 4 3 22 22 F 1.35102 * 120.09268 * 179.72726 * 21 6 4 23 23 C 1.38190 * 119.81475 * 359.51630 * 21 6 4 24 24 H 1.09001 * 109.47302 * 90.00851 * 1 2 3 25 25 H 1.09007 * 109.47367 * 209.99926 * 1 2 3 26 26 H 1.09001 * 109.47263 * 330.00216 * 1 2 3 27 27 H 1.07999 * 119.90759 * 0.02562 * 3 2 1 28 28 H 1.08004 * 120.00418 * 359.97438 * 7 6 4 29 29 H 0.96997 * 120.00532 * 359.97438 * 9 8 7 30 30 H 1.09003 * 109.46748 * 59.03758 * 12 10 9 31 31 H 1.08991 * 109.46982 * 179.03645 * 12 10 9 32 32 H 1.08995 * 109.46854 * 299.04157 * 12 10 9 33 33 H 0.96999 * 119.99638 * 179.97438 * 16 15 13 34 34 H 1.07991 * 119.90878 * 180.22841 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.2002 0.0000 4 6 3.5767 1.2089 -0.0005 5 9 4.2467 2.3821 -0.0011 6 6 4.2797 -0.0001 -0.0005 7 6 5.7543 0.0000 -0.0017 8 7 6.4030 -1.1237 -0.0022 9 7 7.8040 -1.1237 -0.0027 10 6 8.5365 -2.3924 -0.0038 11 1 7.9476 -3.1524 0.5098 12 6 8.7909 -2.8333 -1.4467 13 6 9.8536 -2.2127 0.7062 14 1 10.3829 -1.2742 0.6328 15 6 10.3828 -3.2464 1.4493 16 7 11.5570 -3.1081 2.0253 17 14 9.4322 -4.8433 1.6379 18 1 8.4716 -4.7175 2.7633 19 1 8.6905 -5.1290 0.3835 20 1 10.3789 -5.9529 1.9168 21 6 3.5767 -1.2090 -0.0053 22 9 4.2466 -2.3822 -0.0109 23 6 2.1948 -1.2003 0.0001 24 1 -0.3634 -0.0002 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6504 2.1329 0.0004 28 1 6.2943 0.9353 -0.0029 29 1 8.2890 -0.2837 -0.0031 30 1 9.3651 -2.0655 -1.9653 31 1 9.3507 -3.7684 -1.4475 32 1 7.8380 -2.9798 -1.9551 33 1 11.9292 -3.8353 2.5484 34 1 1.6504 -2.1330 0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819809106.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:01 Heat of formation + Delta-G solvation = -28.728477 kcal Electronic energy + Delta-G solvation = -19552.319550 eV Core-core repulsion = 16122.023589 eV Total energy + Delta-G solvation = -3430.295961 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.96116 -48.61044 -39.03018 -36.65731 -34.38425 -32.70788 -31.46598 -30.37812 -28.71726 -26.50876 -25.25766 -22.98469 -22.50392 -20.55061 -20.16947 -17.76734 -17.52765 -17.05350 -16.08734 -15.91868 -15.67706 -15.26952 -15.07082 -15.01778 -14.17855 -13.76002 -13.73871 -13.35241 -13.18004 -12.84734 -12.55315 -12.29829 -12.11646 -11.88010 -11.70431 -11.60384 -11.11455 -11.08367 -10.79146 -10.42142 -9.95336 -9.63269 -9.20730 -8.95862 -8.77341 -8.70776 -6.96654 -6.25789 -4.29591 0.71734 0.98204 2.71795 3.22443 3.31126 3.35383 3.53036 3.57978 3.89279 4.29035 4.35114 4.49867 4.68748 4.89181 5.00824 5.15393 5.17223 5.31219 5.47348 5.66240 5.76935 5.83835 5.99835 6.13468 6.20468 6.25309 6.51528 6.62216 6.65922 6.78784 7.00462 7.22742 7.49664 8.00139 8.33576 8.75965 9.10821 9.34881 10.86161 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.029057 B = 0.004406 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.398001 B = 6353.021735 C = 6893.736374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.043 4.043 3 C -0.165 4.165 4 C 0.134 3.866 5 F -0.130 7.130 6 C -0.078 4.078 7 C -0.024 4.024 8 N -0.179 5.179 9 N -0.610 5.610 10 C 0.263 3.737 11 H 0.045 0.955 12 C -0.151 4.151 13 C -0.529 4.529 14 H 0.078 0.922 15 C 0.081 3.919 16 N -0.888 5.888 17 Si 0.877 3.123 18 H -0.272 1.272 19 H -0.260 1.260 20 H -0.285 1.285 21 C 0.146 3.854 22 F -0.109 7.109 23 C -0.167 4.167 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.140 0.860 28 H 0.113 0.887 29 H 0.374 0.626 30 H 0.045 0.955 31 H 0.054 0.946 32 H 0.027 0.973 33 H 0.269 0.731 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.250 6.356 -4.554 22.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.044 4.044 3 C -0.184 4.184 4 C 0.112 3.888 5 F -0.108 7.108 6 C -0.082 4.082 7 C -0.231 4.231 8 N 0.007 4.993 9 N -0.347 5.347 10 C 0.161 3.839 11 H 0.063 0.937 12 C -0.210 4.210 13 C -0.568 4.568 14 H 0.096 0.904 15 C -0.124 4.124 16 N -0.525 5.525 17 Si 0.704 3.296 18 H -0.198 1.198 19 H -0.185 1.185 20 H -0.211 1.211 21 C 0.124 3.876 22 F -0.087 7.087 23 C -0.186 4.186 24 H 0.094 0.906 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.158 0.842 28 H 0.130 0.870 29 H 0.211 0.789 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -20.961 5.077 -4.435 22.018 hybrid contribution 0.488 0.399 0.211 0.665 sum -20.473 5.476 -4.224 21.610 Atomic orbital electron populations 1.20802 0.89972 1.03308 1.02825 1.19480 0.96396 0.91266 0.97283 1.20850 0.91630 0.99417 1.06527 1.17237 0.89488 0.80005 1.02101 1.91501 1.80751 1.44919 1.93625 1.18449 0.92462 0.91202 1.06120 1.23085 0.91361 0.95000 1.13619 1.74097 0.96350 1.26353 1.02527 1.49309 0.96504 1.09638 1.79242 1.18952 0.90614 0.81383 0.92968 0.93732 1.22343 0.98922 1.00799 0.98971 1.21023 1.02670 1.02180 1.30944 0.90437 1.24936 0.94824 0.98649 0.93949 1.69878 1.16849 1.33282 1.32443 0.86858 0.80053 0.83021 0.79717 1.19785 1.18482 1.21082 1.17438 0.89318 0.81105 0.99747 1.91625 1.80428 1.43881 1.92736 1.20991 0.91950 0.99482 1.06156 0.90585 0.90999 0.91039 0.84238 0.86959 0.78879 0.93576 0.92664 0.95359 0.92153 0.84242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.00 36.00 0.36 -0.31 16 2 C -0.04 -0.40 5.88 -104.55 -0.62 -1.02 16 3 C -0.17 -1.67 9.66 -39.57 -0.38 -2.05 16 4 C 0.13 1.74 7.28 -39.00 -0.28 1.45 16 5 F -0.13 -1.73 16.62 2.25 0.04 -1.69 16 6 C -0.08 -1.21 5.88 -104.93 -0.62 -1.82 16 7 C -0.02 -0.43 10.54 -14.68 -0.15 -0.59 16 8 N -0.18 -3.74 9.54 32.15 0.31 -3.44 16 9 N -0.61 -13.54 6.10 -5.88 -0.04 -13.57 16 10 C 0.26 6.42 2.84 -69.08 -0.20 6.22 16 11 H 0.04 1.14 5.43 -51.92 -0.28 0.86 16 12 C -0.15 -3.33 9.49 37.16 0.35 -2.98 16 13 C -0.53 -14.58 9.08 -34.44 -0.31 -14.90 16 14 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 15 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 16 N -0.89 -26.42 13.96 55.43 0.77 -25.64 16 17 Si 0.88 21.39 26.77 -169.99 -4.55 16.84 16 18 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.26 -6.11 6.81 56.52 0.38 -5.73 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 C 0.15 2.18 7.28 -39.00 -0.28 1.90 16 22 F -0.11 -1.93 15.36 2.25 0.03 -1.89 16 23 C -0.17 -1.87 9.66 -39.56 -0.38 -2.25 16 24 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.07 0.37 8.08 -51.92 -0.42 -0.05 16 26 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 27 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 28 H 0.11 1.86 7.71 -52.48 -0.40 1.45 16 29 H 0.37 7.78 8.60 -182.60 -1.57 6.21 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.05 1.21 7.89 -51.93 -0.41 0.80 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 305.13 15.07 4.60 4.60 Total: -1.00 -30.39 305.13 -6.64 -37.03 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -5.19 Total: 1.92 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -2.61 Total: -14.15 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 1.04 Total: -42.65 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.07 Total: -3.58 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.55 Total: 16.84 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.39 -6.64 -37.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819809106.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.301 kcal (2) G-P(sol) polarization free energy of solvation -30.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds