Wall clock time and date at job start Mon Mar 30 2020 06:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38336 * 119.81935 * 2 1 4 4 C 1.38183 * 120.18104 * 180.02562 * 3 2 1 5 5 F 1.35099 * 120.09195 * 179.97438 * 4 3 2 6 6 C 1.39853 * 119.81490 * 359.97438 * 4 3 2 7 7 C 1.47458 * 120.17529 * 179.97438 * 6 4 3 8 8 N 1.29745 * 119.99957 * 180.02562 * 7 6 4 9 9 N 1.40098 * 120.00083 * 180.02562 * 8 7 6 10 10 C 1.46503 * 120.00106 * 180.02562 * 9 8 7 11 11 H 1.09010 * 109.47009 * 329.99719 * 10 9 8 12 12 C 1.53003 * 109.47469 * 89.99297 * 10 9 8 13 13 C 1.50699 * 109.47268 * 209.99938 * 10 9 8 14 14 H 1.07997 * 119.99728 * 325.65356 * 13 10 9 15 15 C 1.37876 * 119.99989 * 145.65748 * 13 10 9 16 16 N 1.31516 * 119.99565 * 177.30882 * 15 13 10 17 17 Si 1.86795 * 120.00342 * 357.31023 * 15 13 10 18 18 H 1.48501 * 109.46989 * 274.92304 * 17 15 13 19 19 H 1.48502 * 109.47174 * 34.92145 * 17 15 13 20 20 H 1.48500 * 109.47093 * 154.91895 * 17 15 13 21 21 C 1.39852 * 119.64513 * 0.25141 * 6 4 3 22 22 F 1.35102 * 120.09268 * 179.72726 * 21 6 4 23 23 C 1.38190 * 119.81475 * 359.51630 * 21 6 4 24 24 H 1.09001 * 109.47302 * 90.00851 * 1 2 3 25 25 H 1.09007 * 109.47367 * 209.99926 * 1 2 3 26 26 H 1.09001 * 109.47263 * 330.00216 * 1 2 3 27 27 H 1.07999 * 119.90759 * 0.02562 * 3 2 1 28 28 H 1.08004 * 120.00418 * 359.97438 * 7 6 4 29 29 H 0.96997 * 120.00532 * 359.97438 * 9 8 7 30 30 H 1.09003 * 109.46748 * 59.03758 * 12 10 9 31 31 H 1.08991 * 109.46982 * 179.03645 * 12 10 9 32 32 H 1.08995 * 109.46854 * 299.04157 * 12 10 9 33 33 H 0.96999 * 119.99638 * 179.97438 * 16 15 13 34 34 H 1.07991 * 119.90878 * 180.22841 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.2002 0.0000 4 6 3.5767 1.2089 -0.0005 5 9 4.2467 2.3821 -0.0011 6 6 4.2797 -0.0001 -0.0005 7 6 5.7543 0.0000 -0.0017 8 7 6.4030 -1.1237 -0.0022 9 7 7.8040 -1.1237 -0.0027 10 6 8.5365 -2.3924 -0.0038 11 1 7.9476 -3.1524 0.5098 12 6 8.7909 -2.8333 -1.4467 13 6 9.8536 -2.2127 0.7062 14 1 10.3829 -1.2742 0.6328 15 6 10.3828 -3.2464 1.4493 16 7 11.5570 -3.1081 2.0253 17 14 9.4322 -4.8433 1.6379 18 1 8.4716 -4.7175 2.7633 19 1 8.6905 -5.1290 0.3835 20 1 10.3789 -5.9529 1.9168 21 6 3.5767 -1.2090 -0.0053 22 9 4.2466 -2.3822 -0.0109 23 6 2.1948 -1.2003 0.0001 24 1 -0.3634 -0.0002 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6504 2.1329 0.0004 28 1 6.2943 0.9353 -0.0029 29 1 8.2890 -0.2837 -0.0031 30 1 9.3651 -2.0655 -1.9653 31 1 9.3507 -3.7684 -1.4475 32 1 7.8380 -2.9798 -1.9551 33 1 11.9292 -3.8353 2.5484 34 1 1.6504 -2.1330 0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819809106.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:00 Heat of formation + Delta-G solvation = -47.316807 kcal Electronic energy + Delta-G solvation = -19553.125600 eV Core-core repulsion = 16122.023589 eV Total energy + Delta-G solvation = -3431.102011 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.00122 -49.82104 -39.98669 -38.23834 -36.04065 -34.24006 -33.04501 -31.32267 -30.00447 -27.69598 -27.26100 -24.02053 -23.58917 -22.12651 -21.67137 -19.46060 -18.60831 -18.43042 -17.49809 -16.99878 -16.94503 -16.62068 -16.50882 -16.21887 -15.56430 -15.24522 -14.69535 -14.62086 -14.29911 -14.24066 -14.07338 -13.98556 -13.12230 -13.05490 -12.86173 -12.78203 -12.67490 -12.56445 -12.35276 -12.09156 -11.86849 -11.35511 -11.03542 -10.87066 -10.07414 -9.73620 -8.51398 -8.42150 -6.50323 -0.33115 0.03091 1.29663 1.32484 1.43626 1.47501 1.98455 2.25650 2.50477 2.87805 2.98872 3.41662 3.58338 3.70714 3.79496 4.17394 4.35845 4.43667 4.64689 4.68435 4.73964 4.80063 4.81982 4.94054 4.95261 5.05741 5.08109 5.28194 5.33353 5.41954 5.42619 5.53882 5.83206 6.05855 6.41710 6.57315 7.18003 7.54987 8.73532 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.029057 B = 0.004406 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.398001 B = 6353.021735 C = 6893.736374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.019 4.019 3 C -0.155 4.155 4 C 0.135 3.865 5 F -0.134 7.134 6 C -0.120 4.120 7 C 0.010 3.990 8 N -0.221 5.221 9 N -0.634 5.634 10 C 0.272 3.728 11 H 0.032 0.968 12 C -0.143 4.143 13 C -0.532 4.532 14 H 0.043 0.957 15 C 0.029 3.971 16 N -0.934 5.934 17 Si 0.937 3.063 18 H -0.274 1.274 19 H -0.245 1.245 20 H -0.274 1.274 21 C 0.125 3.875 22 F -0.133 7.133 23 C -0.163 4.163 24 H 0.093 0.907 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.175 0.825 28 H 0.120 0.880 29 H 0.374 0.626 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.040 0.960 33 H 0.272 0.728 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.587 6.710 -5.093 26.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.021 4.021 3 C -0.173 4.173 4 C 0.112 3.888 5 F -0.113 7.113 6 C -0.124 4.124 7 C -0.199 4.199 8 N -0.032 5.032 9 N -0.371 5.371 10 C 0.168 3.832 11 H 0.050 0.950 12 C -0.203 4.203 13 C -0.572 4.572 14 H 0.062 0.938 15 C -0.172 4.172 16 N -0.572 5.572 17 Si 0.760 3.240 18 H -0.199 1.199 19 H -0.169 1.169 20 H -0.200 1.200 21 C 0.103 3.897 22 F -0.111 7.111 23 C -0.182 4.182 24 H 0.112 0.888 25 H 0.102 0.898 26 H 0.109 0.891 27 H 0.192 0.808 28 H 0.137 0.863 29 H 0.211 0.789 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -25.313 5.434 -4.988 26.366 hybrid contribution 1.504 0.562 0.362 1.646 sum -23.810 5.996 -4.626 24.985 Atomic orbital electron populations 1.20959 0.86651 1.04964 1.04376 1.20010 0.98484 0.90082 0.93512 1.21286 0.90244 1.01316 1.04479 1.17448 0.90555 0.78969 1.01779 1.91495 1.81131 1.44973 1.93651 1.18525 0.91043 0.92800 1.10075 1.23639 0.93009 0.94668 1.08599 1.74133 0.95163 1.27514 1.06367 1.48790 0.97379 1.08573 1.82343 1.18652 0.88858 0.82127 0.93516 0.94995 1.22222 0.99570 1.00725 0.97737 1.21220 1.04021 1.00823 1.31100 0.93830 1.25730 0.95576 1.02114 0.93739 1.69997 1.18583 1.34686 1.33958 0.85902 0.78837 0.79107 0.80107 1.19918 1.16900 1.19976 1.17855 0.90759 0.80133 1.00960 1.91562 1.81216 1.45151 1.93171 1.21319 0.90342 1.01495 1.05025 0.88817 0.89768 0.89122 0.80765 0.86261 0.78875 0.93309 0.92704 0.94071 0.91876 0.81934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.00 71.24 0.71 0.03 16 2 C -0.02 -0.27 5.88 -19.82 -0.12 -0.39 16 3 C -0.15 -2.46 9.66 22.28 0.22 -2.24 16 4 C 0.13 3.18 7.28 22.65 0.16 3.35 16 5 F -0.13 -3.33 16.62 44.97 0.75 -2.58 16 6 C -0.12 -3.61 5.88 -20.07 -0.12 -3.73 16 7 C 0.01 0.36 10.54 87.43 0.92 1.28 16 8 N -0.22 -9.46 9.54 -52.19 -0.50 -9.96 16 9 N -0.63 -29.16 6.10 -172.50 -1.05 -30.21 16 10 C 0.27 13.60 2.84 44.25 0.13 13.73 16 11 H 0.03 1.66 5.43 -2.38 -0.01 1.65 16 12 C -0.14 -6.37 9.49 71.98 0.68 -5.68 16 13 C -0.53 -30.57 9.08 25.60 0.23 -30.34 16 14 H 0.04 2.72 8.06 -2.91 -0.02 2.70 16 15 C 0.03 1.66 5.47 84.65 0.46 2.13 16 16 N -0.93 -57.42 13.96 21.45 0.30 -57.12 16 17 Si 0.94 44.78 26.77 68.60 1.84 46.62 16 18 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.25 -11.04 6.81 99.48 0.68 -10.37 16 20 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 21 C 0.12 3.59 7.28 22.65 0.16 3.75 16 22 F -0.13 -4.73 15.36 44.97 0.69 -4.04 16 23 C -0.16 -3.15 9.66 22.28 0.22 -2.93 16 24 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 25 H 0.08 0.39 8.08 -2.38 -0.02 0.37 16 26 H 0.09 0.29 8.08 -2.39 -0.02 0.27 16 27 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 28 H 0.12 4.00 7.71 -2.91 -0.02 3.98 16 29 H 0.37 16.42 8.60 -213.32 -1.83 14.59 16 30 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.05 2.39 7.89 -2.39 -0.02 2.37 16 32 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 34 H 0.16 2.34 8.06 -2.92 -0.02 2.32 16 Total: -1.00 -69.10 305.13 4.95 -64.15 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -0.73 Total: 14.18 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: 3.66 Total: -21.05 kcal Atomic # 7 Polarization: -96.03 SS G_CDS: -1.25 Total: -97.28 kcal Atomic # 9 Polarization: -8.06 SS G_CDS: 1.44 Total: -6.62 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.84 Total: 46.62 kcal Total: -69.10 4.95 -64.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819809106.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.832 kcal (2) G-P(sol) polarization free energy of solvation -69.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds