Wall clock time and date at job start Mon Mar 30 2020 07:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00200 * 2 1 4 4 H 1.48497 * 109.47180 * 269.99766 * 3 2 1 5 5 H 1.48497 * 109.47007 * 30.00390 * 3 2 1 6 6 H 1.48500 * 109.46960 * 149.99798 * 3 2 1 7 7 C 1.37879 * 119.99457 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99385 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00291 * 359.97438 * 7 2 1 10 10 H 1.08996 * 110.53825 * 57.38923 * 9 7 2 11 11 C 1.54268 * 110.48760 * 294.77471 * 9 7 2 12 12 C 1.53876 * 106.59992 * 217.71212 * 11 9 7 13 13 C 1.54268 * 106.59607 * 0.02562 * 12 11 9 14 14 H 1.09003 * 110.48471 * 264.93239 * 13 12 11 15 15 N 1.46498 * 110.48389 * 142.28972 * 13 12 11 16 16 C 1.34780 * 119.99923 * 90.22208 * 15 13 12 17 17 S 1.71196 * 120.00011 * 359.97438 * 16 15 13 18 18 N 1.34780 * 119.99711 * 179.97438 * 16 15 13 19 19 C 1.46500 * 119.99706 * 179.97438 * 18 16 15 20 20 C 1.53783 * 113.61495 * 252.49887 * 19 18 16 21 21 C 1.53783 * 87.08190 * 220.02122 * 20 19 18 22 22 C 1.53784 * 87.08095 * 25.43311 * 21 20 19 23 23 C 1.54882 * 104.19992 * 23.60931 * 13 12 11 24 24 H 0.97000 * 119.99685 * 0.02562 * 1 2 3 25 25 H 1.08998 * 110.02839 * 337.00222 * 11 9 7 26 26 H 1.09000 * 110.02607 * 98.37709 * 11 9 7 27 27 H 1.08994 * 110.02975 * 119.28475 * 12 11 9 28 28 H 1.09000 * 110.03018 * 240.67159 * 12 11 9 29 29 H 0.97002 * 120.00095 * 270.22095 * 15 13 12 30 30 H 0.96999 * 119.99815 * 0.02562 * 18 16 15 31 31 H 1.08997 * 112.84842 * 23.81031 * 19 18 16 32 32 H 1.09001 * 113.61689 * 334.56976 * 20 19 18 33 33 H 1.09001 * 113.60987 * 105.47673 * 20 19 18 34 34 H 1.08999 * 113.61425 * 270.88940 * 21 20 19 35 35 H 1.09001 * 113.68947 * 139.99196 * 21 20 19 36 36 H 1.08997 * 113.61373 * 220.01789 * 22 21 20 37 37 H 1.09000 * 113.69132 * 89.12456 * 22 21 20 38 38 H 1.08994 * 110.76048 * 203.74464 * 23 13 12 39 39 H 1.09004 * 110.75771 * 80.36858 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.5830 -2.5551 -0.8601 11 6 0.4570 -2.6643 1.3118 12 6 0.5417 -4.1527 1.6926 13 6 1.3848 -4.8401 0.5987 14 1 0.7387 -5.2741 -0.1644 15 7 2.2479 -5.8675 1.1865 16 6 1.8042 -7.1349 1.3023 17 16 0.2316 -7.5439 0.7632 18 7 2.5985 -8.0803 1.8426 19 6 2.1160 -9.4577 1.9691 20 6 1.7910 -9.8663 3.4156 21 6 2.4220 -11.2301 3.0888 22 6 3.2425 -10.5037 2.0099 23 6 2.2370 -3.6940 -0.0005 24 1 -0.4850 0.8401 -0.0004 25 1 0.9014 -2.0521 2.0965 26 1 -0.5829 -2.3761 1.1578 27 1 1.0273 -4.2630 2.6622 28 1 -0.4573 -4.5876 1.7240 29 1 3.1388 -5.6357 1.4923 30 1 3.4893 -7.8484 2.1484 31 1 1.3246 -9.6958 1.2584 32 1 2.3429 -9.2980 4.1643 33 1 0.7226 -9.9185 3.6249 34 1 1.7136 -11.9535 2.6853 35 1 3.0282 -11.6373 3.8980 36 1 3.3459 -11.0705 1.0846 37 1 4.1916 -10.1093 2.3730 38 1 2.5504 -3.9359 -1.0159 39 1 3.0998 -3.4831 0.6314 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840788442.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:19 Heat of formation + Delta-G solvation = 16.831147 kcal Electronic energy + Delta-G solvation = -18133.693480 eV Core-core repulsion = 15395.046613 eV Total energy + Delta-G solvation = -2738.646866 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.87146 -38.48834 -36.28001 -33.51147 -31.94131 -28.20210 -27.35999 -25.99396 -25.08582 -23.75529 -23.45152 -20.36940 -20.15536 -19.12741 -17.97633 -17.43329 -16.35646 -15.54849 -15.47170 -14.95656 -14.72054 -14.27891 -14.20678 -13.18657 -12.84262 -12.66776 -12.59764 -12.35555 -11.88917 -11.56112 -11.23803 -11.10176 -10.94493 -10.91813 -10.73227 -10.60157 -10.49750 -10.28302 -10.02228 -9.61486 -9.30221 -8.86043 -8.77707 -8.40780 -7.59588 -7.12331 -6.03126 -4.06887 1.58340 2.16536 2.75804 3.28472 3.35790 3.37318 3.65858 4.17777 4.29155 4.41463 4.56460 4.59322 5.27099 5.28479 5.33619 5.34571 5.47033 5.53416 5.57981 5.66184 5.73011 5.76408 5.91676 6.09053 6.23885 6.40315 6.50064 6.58572 6.66213 6.77114 6.86174 7.00999 7.26361 7.28170 7.47236 7.68749 7.84645 7.99085 8.40046 8.95572 9.57292 11.06523 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.048031 B = 0.003550 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.817695 B = 7885.128627 C = 8122.994441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.517 4.517 8 H 0.054 0.946 9 C 0.054 3.946 10 H 0.037 0.963 11 C -0.097 4.097 12 C -0.128 4.128 13 C 0.132 3.868 14 H 0.116 0.884 15 N -0.667 5.667 16 C 0.566 3.434 17 S -0.657 6.657 18 N -0.687 5.687 19 C 0.124 3.876 20 C -0.149 4.149 21 C -0.137 4.137 22 C -0.149 4.149 23 C -0.121 4.121 24 H 0.261 0.739 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.394 0.606 30 H 0.394 0.606 31 H 0.143 0.857 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.106 -18.282 6.419 21.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.555 4.555 8 H 0.073 0.927 9 C 0.035 3.965 10 H 0.055 0.945 11 C -0.135 4.135 12 C -0.167 4.167 13 C 0.029 3.971 14 H 0.134 0.866 15 N -0.293 5.293 16 C 0.205 3.795 17 S -0.531 6.531 18 N -0.317 5.317 19 C 0.019 3.981 20 C -0.188 4.188 21 C -0.175 4.175 22 C -0.187 4.187 23 C -0.159 4.159 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.230 0.770 30 H 0.230 0.770 31 H 0.161 0.839 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.782 -18.403 6.002 20.511 hybrid contribution 2.175 1.448 0.724 2.711 sum 8.957 -16.955 6.726 20.321 Atomic orbital electron populations 1.69968 1.05845 1.26563 1.49966 1.24981 0.94836 0.99012 0.95065 0.86647 0.79814 0.83731 0.78090 1.20695 1.21257 1.20043 1.21085 0.92664 0.90394 1.51403 0.92730 1.19390 0.92160 0.90817 0.94135 0.94510 1.22103 1.01362 0.90425 0.99649 1.22554 0.99399 0.98337 0.96407 1.22732 0.92115 0.85543 0.96718 0.86597 1.45573 1.18524 1.06426 1.58746 1.22375 0.93328 0.82532 0.81279 1.93354 1.03702 1.87642 1.68442 1.45047 1.16773 1.09076 1.60809 1.23169 0.98574 0.77093 0.99256 1.23384 1.02416 0.96344 0.96682 1.22662 0.99496 0.96590 0.98775 1.23371 0.97687 0.97407 1.00266 1.22931 0.98903 0.95210 0.98898 0.92964 0.92994 0.92273 0.93546 0.91715 0.77042 0.77018 0.83930 0.90151 0.90223 0.89455 0.90867 0.90438 0.89985 0.92580 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.18 12.63 55.43 0.70 -24.48 16 2 C 0.06 1.72 5.35 -17.82 -0.10 1.63 16 3 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -13.69 8.36 -34.44 -0.29 -13.98 16 8 H 0.05 1.42 7.77 -52.48 -0.41 1.01 16 9 C 0.05 1.29 2.73 -90.10 -0.25 1.04 16 10 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 11 C -0.10 -2.20 5.60 -25.61 -0.14 -2.34 16 12 C -0.13 -2.43 6.54 -25.61 -0.17 -2.60 16 13 C 0.13 2.31 2.95 -66.28 -0.20 2.11 16 14 H 0.12 2.27 6.76 -51.93 -0.35 1.91 16 15 N -0.67 -9.19 5.10 -53.91 -0.27 -9.46 16 16 C 0.57 8.00 7.98 -86.91 -0.69 7.31 16 17 S -0.66 -12.20 26.64 -107.50 -2.86 -15.06 16 18 N -0.69 -6.89 5.36 -54.73 -0.29 -7.18 16 19 C 0.12 1.17 4.03 -67.12 -0.27 0.90 16 20 C -0.15 -1.23 7.88 -25.92 -0.20 -1.43 16 21 C -0.14 -0.86 8.08 -25.92 -0.21 -1.07 16 22 C -0.15 -0.98 7.83 -25.92 -0.20 -1.18 16 23 C -0.12 -2.30 5.90 -24.73 -0.15 -2.45 16 24 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 25 H 0.05 1.24 7.83 -51.93 -0.41 0.83 16 26 H 0.06 1.46 8.06 -51.93 -0.42 1.04 16 27 H 0.05 0.83 8.04 -51.93 -0.42 0.41 16 28 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.39 4.28 8.58 -40.82 -0.35 3.93 16 30 H 0.39 2.80 8.74 -40.82 -0.36 2.44 16 31 H 0.14 1.70 6.58 -51.93 -0.34 1.36 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.45 8.12 -51.93 -0.42 0.03 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.06 1.06 7.93 -51.93 -0.41 0.65 16 LS Contribution 325.66 15.07 4.91 4.91 Total: -1.00 -30.78 325.66 -12.11 -42.89 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -6.40 Total: 4.61 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -2.86 Total: -12.07 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: 0.13 Total: -41.12 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: -12.20 SS G_CDS: -2.86 Total: -15.06 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.78 -12.11 -42.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840788442.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.718 kcal (2) G-P(sol) polarization free energy of solvation -30.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds