Wall clock time and date at job start Mon Mar 30 2020 07:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00200 * 2 1 4 4 H 1.48497 * 109.47180 * 269.99766 * 3 2 1 5 5 H 1.48497 * 109.47007 * 30.00390 * 3 2 1 6 6 H 1.48500 * 109.46960 * 149.99798 * 3 2 1 7 7 C 1.37879 * 119.99457 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99385 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00291 * 359.97438 * 7 2 1 10 10 H 1.08996 * 110.53825 * 57.38923 * 9 7 2 11 11 C 1.54268 * 110.48760 * 294.77471 * 9 7 2 12 12 C 1.53876 * 106.59992 * 217.71212 * 11 9 7 13 13 C 1.54268 * 106.59607 * 0.02562 * 12 11 9 14 14 H 1.09003 * 110.48471 * 264.93239 * 13 12 11 15 15 N 1.46498 * 110.48389 * 142.28972 * 13 12 11 16 16 C 1.34780 * 119.99923 * 90.22208 * 15 13 12 17 17 S 1.71196 * 120.00011 * 359.97438 * 16 15 13 18 18 N 1.34780 * 119.99711 * 179.97438 * 16 15 13 19 19 C 1.46500 * 119.99706 * 179.97438 * 18 16 15 20 20 C 1.53783 * 113.61495 * 252.49887 * 19 18 16 21 21 C 1.53783 * 87.08190 * 220.02122 * 20 19 18 22 22 C 1.53784 * 87.08095 * 25.43311 * 21 20 19 23 23 C 1.54882 * 104.19992 * 23.60931 * 13 12 11 24 24 H 0.97000 * 119.99685 * 0.02562 * 1 2 3 25 25 H 1.08998 * 110.02839 * 337.00222 * 11 9 7 26 26 H 1.09000 * 110.02607 * 98.37709 * 11 9 7 27 27 H 1.08994 * 110.02975 * 119.28475 * 12 11 9 28 28 H 1.09000 * 110.03018 * 240.67159 * 12 11 9 29 29 H 0.97002 * 120.00095 * 270.22095 * 15 13 12 30 30 H 0.96999 * 119.99815 * 0.02562 * 18 16 15 31 31 H 1.08997 * 112.84842 * 23.81031 * 19 18 16 32 32 H 1.09001 * 113.61689 * 334.56976 * 20 19 18 33 33 H 1.09001 * 113.60987 * 105.47673 * 20 19 18 34 34 H 1.08999 * 113.61425 * 270.88940 * 21 20 19 35 35 H 1.09001 * 113.68947 * 139.99196 * 21 20 19 36 36 H 1.08997 * 113.61373 * 220.01789 * 22 21 20 37 37 H 1.09000 * 113.69132 * 89.12456 * 22 21 20 38 38 H 1.08994 * 110.76048 * 203.74464 * 23 13 12 39 39 H 1.09004 * 110.75771 * 80.36858 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.5830 -2.5551 -0.8601 11 6 0.4570 -2.6643 1.3118 12 6 0.5417 -4.1527 1.6926 13 6 1.3848 -4.8401 0.5987 14 1 0.7387 -5.2741 -0.1644 15 7 2.2479 -5.8675 1.1865 16 6 1.8042 -7.1349 1.3023 17 16 0.2316 -7.5439 0.7632 18 7 2.5985 -8.0803 1.8426 19 6 2.1160 -9.4577 1.9691 20 6 1.7910 -9.8663 3.4156 21 6 2.4220 -11.2301 3.0888 22 6 3.2425 -10.5037 2.0099 23 6 2.2370 -3.6940 -0.0005 24 1 -0.4850 0.8401 -0.0004 25 1 0.9014 -2.0521 2.0965 26 1 -0.5829 -2.3761 1.1578 27 1 1.0273 -4.2630 2.6622 28 1 -0.4573 -4.5876 1.7240 29 1 3.1388 -5.6357 1.4923 30 1 3.4893 -7.8484 2.1484 31 1 1.3246 -9.6958 1.2584 32 1 2.3429 -9.2980 4.1643 33 1 0.7226 -9.9185 3.6249 34 1 1.7136 -11.9535 2.6853 35 1 3.0282 -11.6373 3.8980 36 1 3.3459 -11.0705 1.0846 37 1 4.1916 -10.1093 2.3730 38 1 2.5504 -3.9359 -1.0159 39 1 3.0998 -3.4831 0.6314 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840788442.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:18 Heat of formation + Delta-G solvation = -1.075461 kcal Electronic energy + Delta-G solvation = -18134.469968 eV Core-core repulsion = 15395.046613 eV Total energy + Delta-G solvation = -2739.423355 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.81413 -39.72692 -37.60959 -34.99398 -33.63351 -29.98255 -28.93322 -26.60562 -26.23537 -25.41089 -24.56411 -21.73075 -21.21934 -20.73971 -19.08527 -18.74795 -17.94891 -16.74579 -16.60241 -16.36624 -16.27110 -15.82485 -15.30064 -14.46263 -14.15057 -13.94800 -13.69735 -13.43387 -13.35070 -13.04100 -12.77295 -12.45257 -12.30679 -12.20898 -12.19342 -11.98400 -11.72246 -11.48785 -11.37606 -11.34761 -11.09716 -10.76409 -10.47621 -9.98653 -8.99886 -8.56646 -8.10183 -6.20530 0.39919 0.94215 1.43366 1.44126 1.53469 1.57923 2.44874 2.64490 3.21362 3.54601 3.68697 3.83245 3.95810 3.97902 3.99065 4.18042 4.60259 4.65175 4.70741 4.75471 4.81496 4.85558 4.93468 5.01526 5.07418 5.08571 5.11126 5.11475 5.13529 5.27236 5.40965 5.55694 5.66294 5.71648 5.90567 5.97753 5.99714 6.37345 6.47068 6.91412 7.47463 8.99201 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.048031 B = 0.003550 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.817695 B = 7885.128627 C = 8122.994441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.009 3.991 3 Si 0.954 3.046 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.263 1.263 7 C -0.528 4.528 8 H 0.062 0.938 9 C 0.042 3.958 10 H 0.000 1.000 11 C -0.086 4.086 12 C -0.114 4.114 13 C 0.152 3.848 14 H 0.095 0.905 15 N -0.655 5.655 16 C 0.588 3.412 17 S -0.747 6.747 18 N -0.656 5.656 19 C 0.108 3.892 20 C -0.148 4.148 21 C -0.128 4.128 22 C -0.133 4.133 23 C -0.105 4.105 24 H 0.259 0.741 25 H 0.038 0.962 26 H 0.026 0.974 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.415 0.585 30 H 0.416 0.584 31 H 0.115 0.885 32 H 0.091 0.909 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.104 0.896 38 H 0.064 0.936 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.511 -19.413 7.704 23.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.190 4.190 3 Si 0.780 3.220 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.566 4.566 8 H 0.080 0.920 9 C 0.023 3.977 10 H 0.018 0.982 11 C -0.125 4.125 12 C -0.153 4.153 13 C 0.047 3.953 14 H 0.113 0.887 15 N -0.282 5.282 16 C 0.223 3.777 17 S -0.623 6.623 18 N -0.286 5.286 19 C 0.003 3.997 20 C -0.188 4.188 21 C -0.166 4.166 22 C -0.171 4.171 23 C -0.143 4.143 24 H 0.068 0.932 25 H 0.056 0.944 26 H 0.045 0.955 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.255 0.745 30 H 0.256 0.744 31 H 0.133 0.867 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.122 0.878 38 H 0.083 0.917 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.264 -19.580 7.318 23.286 hybrid contribution 1.148 1.739 0.350 2.113 sum 11.411 -17.840 7.668 22.523 Atomic orbital electron populations 1.70118 1.07438 1.27188 1.51321 1.25807 0.95580 1.02608 0.94979 0.85619 0.78848 0.79451 0.78110 1.20376 1.21450 1.18704 1.21501 0.93167 0.91482 1.50449 0.92020 1.19362 0.92860 0.92406 0.93076 0.98215 1.21869 0.98985 0.92827 0.98782 1.22363 0.99577 0.95548 0.97830 1.22156 0.91728 0.85776 0.95608 0.88663 1.45065 1.18961 1.05502 1.58705 1.21752 0.91992 0.83022 0.80969 1.93608 1.08146 1.88556 1.71958 1.45059 1.16930 1.08547 1.58064 1.23351 0.99781 0.76966 0.99603 1.23396 1.01695 0.97892 0.95774 1.22645 0.99366 0.95491 0.99137 1.23349 0.97383 0.95723 1.00666 1.22702 0.98221 0.93300 1.00070 0.93199 0.94359 0.95518 0.91576 0.92824 0.74519 0.74428 0.86733 0.89078 0.92093 0.89483 0.89014 0.90030 0.87811 0.91745 0.90395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.91 12.63 21.45 0.27 -53.64 16 2 C 0.01 0.49 5.35 84.66 0.45 0.95 16 3 Si 0.95 42.80 29.54 68.60 2.03 44.83 16 4 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 7 C -0.53 -27.92 8.36 25.60 0.21 -27.71 16 8 H 0.06 3.11 7.77 -2.91 -0.02 3.08 16 9 C 0.04 2.04 2.73 -10.45 -0.03 2.01 16 10 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 11 C -0.09 -4.01 5.60 31.32 0.18 -3.83 16 12 C -0.11 -4.31 6.54 31.32 0.20 -4.11 16 13 C 0.15 5.18 2.95 46.06 0.14 5.31 16 14 H 0.10 3.76 6.76 -2.39 -0.02 3.75 16 15 N -0.65 -16.31 5.10 -324.48 -1.65 -17.97 16 16 C 0.59 15.56 7.98 179.05 1.43 16.98 16 17 S -0.75 -28.27 26.64 -56.49 -1.50 -29.77 16 18 N -0.66 -11.23 5.36 -327.06 -1.75 -12.98 16 19 C 0.11 1.81 4.03 45.52 0.18 1.99 16 20 C -0.15 -2.14 7.88 31.12 0.25 -1.89 16 21 C -0.13 -1.23 8.08 31.12 0.25 -0.98 16 22 C -0.13 -1.27 7.83 31.12 0.24 -1.03 16 23 C -0.10 -3.83 5.90 31.89 0.19 -3.64 16 24 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 25 H 0.04 1.85 7.83 -2.39 -0.02 1.83 16 26 H 0.03 1.37 8.06 -2.39 -0.02 1.35 16 27 H 0.07 2.24 8.04 -2.39 -0.02 2.22 16 28 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.42 7.25 8.58 -92.71 -0.80 6.45 16 30 H 0.42 3.99 8.74 -92.71 -0.81 3.18 16 31 H 0.11 2.71 6.58 -2.39 -0.02 2.70 16 32 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.10 0.60 8.12 -2.39 -0.02 0.58 16 38 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.08 2.57 7.93 -2.38 -0.02 2.55 16 Total: -1.00 -70.06 325.66 0.52 -69.54 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -0.56 Total: 15.94 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: 3.70 Total: -15.95 kcal Atomic # 7 Polarization: -81.45 SS G_CDS: -3.14 Total: -84.59 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: -28.27 SS G_CDS: -1.50 Total: -29.77 kcal Total: -70.06 0.52 -69.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840788442.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.468 kcal (2) G-P(sol) polarization free energy of solvation -70.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds