Wall clock time and date at job start Mon Mar 30 2020 07:34:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 N 1.46490 * 115.54865 * 2 1
4 4 C 1.34774 * 120.00191 * 279.76035 * 3 2 1
5 5 S 1.71201 * 120.00008 * 355.04380 * 4 3 2
6 6 N 1.34779 * 120.00421 * 175.03612 * 4 3 2
7 7 C 1.46494 * 120.00462 * 179.97438 * 6 4 3
8 8 H 1.08999 * 110.43551 * 323.92406 * 7 6 4
9 9 C 1.54273 * 110.48206 * 86.46084 * 7 6 4
10 10 C 1.53872 * 106.60087 * 142.29124 * 9 7 6
11 11 C 1.54278 * 106.59556 * 359.97438 * 10 9 7
12 12 H 1.09008 * 110.48058 * 95.20450 * 11 10 9
13 13 C 1.50702 * 110.48432 * 217.71174 * 11 10 9
14 14 H 1.07997 * 119.99595 * 118.54814 * 13 11 10
15 15 C 1.37872 * 120.00146 * 298.54816 * 13 11 10
16 16 N 1.31513 * 120.00090 * 180.02562 * 15 13 11
17 17 Si 1.86801 * 120.00281 * 0.02562 * 15 13 11
18 18 H 1.48497 * 109.47272 * 89.99895 * 17 15 13
19 19 H 1.48501 * 109.47502 * 210.00016 * 17 15 13
20 20 H 1.48507 * 109.47043 * 329.99855 * 17 15 13
21 21 C 1.54883 * 104.19448 * 336.39425 * 11 10 9
22 22 C 1.52994 * 117.51410 * 145.70280 * 2 1 3
23 23 C 1.52994 * 60.00155 * 107.48119 * 22 2 1
24 24 H 1.09004 * 109.47371 * 64.30351 * 1 2 3
25 25 H 1.08999 * 109.47515 * 184.30126 * 1 2 3
26 26 H 1.09000 * 109.47631 * 304.30198 * 1 2 3
27 27 H 0.97004 * 119.99901 * 99.76439 * 3 2 1
28 28 H 0.97006 * 119.99450 * 0.02562 * 6 4 3
29 29 H 1.08997 * 110.03347 * 23.00132 * 9 7 6
30 30 H 1.09002 * 110.06909 * 261.59714 * 9 7 6
31 31 H 1.09000 * 110.03173 * 240.71510 * 10 9 7
32 32 H 1.08994 * 110.03518 * 119.27870 * 10 9 7
33 33 H 0.97003 * 120.00447 * 179.97438 * 16 15 13
34 34 H 1.09007 * 110.75169 * 156.25897 * 21 11 10
35 35 H 1.08999 * 110.75664 * 279.62394 * 21 11 10
36 36 H 1.09004 * 117.49826 * 214.97110 * 22 2 1
37 37 H 1.09000 * 117.50467 * 359.97438 * 22 2 1
38 38 H 1.09000 * 117.49644 * 252.50889 * 23 22 2
39 39 H 1.08997 * 117.50074 * 107.48830 * 23 22 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.1618 1.3217 0.0000
4 6 2.2739 2.0150 -1.1503
5 16 1.7944 1.3008 -2.6305
6 7 2.7634 3.2707 -1.1354
7 6 2.8858 4.0241 -2.3857
8 1 3.1675 3.3610 -3.2036
9 6 1.5638 4.7502 -2.7101
10 6 1.9472 6.1136 -3.3116
11 6 3.4889 6.1688 -3.3312
12 1 3.8694 5.8559 -4.3036
13 6 3.9711 7.5575 -2.9994
14 1 4.5844 7.7217 -2.1258
15 6 3.6293 8.6182 -3.8111
16 7 4.0506 9.8300 -3.5219
17 14 2.5679 8.3343 -5.3218
18 1 1.1361 8.4757 -4.9545
19 1 2.9126 9.3342 -6.3642
20 1 2.8113 6.9670 -5.8479
21 6 3.9187 5.1680 -2.2300
22 6 2.2368 -1.1210 0.7646
23 6 2.2364 -1.1207 -0.7653
24 1 -0.3634 0.4456 -0.9261
25 1 -0.3634 -1.0247 0.0771
26 1 -0.3634 0.5791 0.8489
27 1 2.4995 1.6978 0.8279
28 1 3.0354 3.6752 -0.2967
29 1 0.9835 4.8940 -1.7988
30 1 0.9872 4.1723 -3.4323
31 1 1.5529 6.9191 -2.6922
32 1 1.5574 6.1970 -4.3261
33 1 3.8105 10.5763 -4.0932
34 1 4.9295 4.8031 -2.4129
35 1 3.8444 5.6243 -1.2429
36 1 3.1720 -0.8751 1.2677
37 1 1.6119 -1.8585 1.2682
38 1 1.6112 -1.8583 -1.2685
39 1 3.1713 -0.8747 -1.2688
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000840788763.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:34:45
Heat of formation + Delta-G solvation = 33.691725 kcal
Electronic energy + Delta-G solvation = -18397.708032 eV
Core-core repulsion = 15659.792295 eV
Total energy + Delta-G solvation = -2737.915737 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 268.130 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-39.72700 -38.38981 -36.06703 -33.15757 -31.96270 -28.79019 -28.50697 -27.67976
-24.14604 -23.57837 -22.53209 -21.21152 -19.98062 -19.43332 -18.13334 -17.23487
-16.49304 -15.68367 -15.25002 -15.12520 -14.96264 -14.06995 -13.71225 -13.26101
-13.02754 -12.74307 -12.59672 -12.49587 -12.40123 -11.76399 -11.71647 -11.20673
-10.97179 -10.93295 -10.60242 -10.49074 -10.15451 -10.10026 -10.03044 -9.80609
-9.54343 -9.02645 -9.02134 -8.57358 -7.62586 -7.11097 -6.10303 -4.10178
1.51072 2.07299 2.59450 3.30547 3.39757 3.42699 3.44428 3.54474
4.41450 4.42266 4.59002 4.69091 5.10625 5.18952 5.24824 5.31130
5.39026 5.47235 5.54966 5.55809 5.81483 5.91560 5.97386 6.00606
6.06898 6.17865 6.26991 6.38294 6.43193 6.50684 6.59974 6.79077
6.86337 7.01653 7.07902 7.37106 7.48180 7.73911 8.47479 8.91591
9.52526 11.02664
Molecular weight = 268.13amu
Principal moments of inertia in cm(-1)
A = 0.044695 B = 0.004105 C = 0.003966
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 626.315287 B = 6818.762207 C = 7057.997693
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.121 4.121
2 C 0.105 3.895
3 N -0.668 5.668
4 C 0.567 3.433
5 S -0.645 6.645
6 N -0.669 5.669
7 C 0.135 3.865
8 H 0.114 0.886
9 C -0.122 4.122
10 C -0.132 4.132
11 C 0.017 3.983
12 H 0.037 0.963
13 C -0.513 4.513
14 H 0.073 0.927
15 C 0.072 3.928
16 N -0.902 5.902
17 Si 0.879 3.121
18 H -0.277 1.277
19 H -0.294 1.294
20 H -0.262 1.262
21 C -0.110 4.110
22 C -0.183 4.183
23 C -0.131 4.131
24 H 0.080 0.920
25 H 0.070 0.930
26 H 0.055 0.945
27 H 0.396 0.604
28 H 0.395 0.605
29 H 0.054 0.946
30 H 0.069 0.931
31 H 0.068 0.932
32 H 0.046 0.954
33 H 0.264 0.736
34 H 0.061 0.939
35 H 0.066 0.934
36 H 0.094 0.906
37 H 0.105 0.895
38 H 0.105 0.895
39 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.687 -19.077 10.285 22.174
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C 0.017 3.983
3 N -0.299 5.299
4 C 0.207 3.793
5 S -0.519 6.519
6 N -0.295 5.295
7 C 0.031 3.969
8 H 0.132 0.868
9 C -0.161 4.161
10 C -0.170 4.170
11 C -0.002 4.002
12 H 0.055 0.945
13 C -0.551 4.551
14 H 0.091 0.909
15 C -0.130 4.130
16 N -0.540 5.540
17 Si 0.708 3.292
18 H -0.203 1.203
19 H -0.221 1.221
20 H -0.187 1.187
21 C -0.148 4.148
22 C -0.221 4.221
23 C -0.169 4.169
24 H 0.099 0.901
25 H 0.089 0.911
26 H 0.074 0.926
27 H 0.232 0.768
28 H 0.231 0.769
29 H 0.072 0.928
30 H 0.088 0.912
31 H 0.087 0.913
32 H 0.065 0.935
33 H 0.074 0.926
34 H 0.080 0.920
35 H 0.085 0.915
36 H 0.113 0.887
37 H 0.123 0.877
38 H 0.123 0.877
39 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges -5.040 -19.350 9.124 21.979
hybrid contribution -0.054 0.908 0.855 1.248
sum -5.094 -18.442 9.979 21.579
Atomic orbital electron populations
1.21510 0.90587 1.02565 1.03256 1.20539 0.92307 0.77662 1.07756
1.44262 1.59912 1.18292 1.07452 1.22332 0.81185 0.83876 0.91911
1.93313 1.68993 1.73927 1.15680 1.45517 1.60198 1.11070 1.12764
1.22653 0.97662 0.92612 0.83938 0.86792 1.22424 0.96048 0.96898
1.00738 1.22651 0.99820 0.95145 0.99392 1.19882 0.90855 0.95175
0.94283 0.94528 1.20966 1.32674 0.89485 1.11944 0.90928 1.24982
0.95624 0.94989 0.97402 1.69900 1.45884 0.99395 1.38852 0.86928
0.80999 0.78178 0.83120 1.20288 1.22114 1.18656 1.22742 0.96536
0.94148 1.01406 1.23552 1.02188 0.99677 0.96703 1.23181 1.02869
0.98740 0.92147 0.90149 0.91089 0.92574 0.76771 0.76891 0.92768
0.91176 0.91329 0.93495 0.92643 0.92012 0.91534 0.88709 0.87665
0.87652 0.87988
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.09 9.93 37.16 0.37 -0.72 16
2 C 0.10 0.97 1.95 -131.83 -0.26 0.72 16
3 N -0.67 -6.56 5.44 -49.31 -0.27 -6.82 16
4 C 0.57 7.55 7.92 -86.92 -0.69 6.87 16
5 S -0.64 -11.13 25.69 -107.50 -2.76 -13.90 16
6 N -0.67 -8.61 5.12 -53.90 -0.28 -8.89 16
7 C 0.13 2.18 2.88 -66.26 -0.19 1.99 16
8 H 0.11 2.03 6.93 -51.93 -0.36 1.67 16
9 C -0.12 -2.14 6.49 -25.61 -0.17 -2.31 16
10 C -0.13 -2.74 4.65 -25.61 -0.12 -2.86 16
11 C 0.02 0.39 2.30 -90.11 -0.21 0.18 16
12 H 0.04 0.85 7.31 -51.92 -0.38 0.47 16
13 C -0.51 -13.83 8.98 -34.44 -0.31 -14.14 16
14 H 0.07 2.11 8.02 -52.49 -0.42 1.69 16
15 C 0.07 2.02 5.46 -17.82 -0.10 1.93 16
16 N -0.90 -27.17 13.96 55.43 0.77 -26.39 16
17 Si 0.88 21.58 24.67 -169.99 -4.19 17.39 16
18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
19 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16
20 H -0.26 -6.19 6.36 56.52 0.36 -5.83 16
21 C -0.11 -1.97 5.88 -24.73 -0.15 -2.12 16
22 C -0.18 -1.28 10.15 -26.74 -0.27 -1.55 16
23 C -0.13 -1.25 8.65 -26.74 -0.23 -1.48 16
24 H 0.08 0.95 7.62 -51.93 -0.40 0.55 16
25 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16
26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
27 H 0.40 2.78 8.85 -40.82 -0.36 2.42 16
28 H 0.39 4.02 8.55 -40.82 -0.35 3.67 16
29 H 0.05 0.90 8.04 -51.93 -0.42 0.48 16
30 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16
31 H 0.07 1.50 7.82 -51.93 -0.41 1.10 16
32 H 0.05 0.99 5.73 -51.93 -0.30 0.70 16
33 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16
34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16
35 H 0.07 1.16 7.93 -51.93 -0.41 0.75 16
36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16
37 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16
38 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16
39 H 0.10 1.17 8.04 -51.93 -0.42 0.75 16
LS Contribution 320.78 15.07 4.83 4.83
Total: -1.00 -31.81 320.78 -10.56 -42.36
By element:
Atomic # 1 Polarization: 11.27 SS G_CDS: -6.35 Total: 4.92 kcal
Atomic # 6 Polarization: -11.19 SS G_CDS: -2.31 Total: -13.50 kcal
Atomic # 7 Polarization: -42.33 SS G_CDS: 0.23 Total: -42.10 kcal
Atomic # 14 Polarization: 21.58 SS G_CDS: -4.19 Total: 17.39 kcal
Atomic # 16 Polarization: -11.13 SS G_CDS: -2.76 Total: -13.90 kcal
Total LS contribution 4.83 Total: 4.83 kcal
Total: -31.81 -10.56 -42.36 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000840788763.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 76.055 kcal
(2) G-P(sol) polarization free energy of solvation -31.807 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.249 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.557 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.364 kcal
(6) G-S(sol) free energy of system = (1) + (5) 33.692 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds