Wall clock time and date at job start Mon Mar 30 2020 07:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46490 * 115.54865 * 2 1 4 4 C 1.34774 * 120.00191 * 279.76035 * 3 2 1 5 5 S 1.71201 * 120.00008 * 355.04380 * 4 3 2 6 6 N 1.34779 * 120.00421 * 175.03612 * 4 3 2 7 7 C 1.46494 * 120.00462 * 179.97438 * 6 4 3 8 8 H 1.08999 * 110.43551 * 323.92406 * 7 6 4 9 9 C 1.54273 * 110.48206 * 86.46084 * 7 6 4 10 10 C 1.53872 * 106.60087 * 142.29124 * 9 7 6 11 11 C 1.54278 * 106.59556 * 359.97438 * 10 9 7 12 12 H 1.09008 * 110.48058 * 95.20450 * 11 10 9 13 13 C 1.50702 * 110.48432 * 217.71174 * 11 10 9 14 14 H 1.07997 * 119.99595 * 118.54814 * 13 11 10 15 15 C 1.37872 * 120.00146 * 298.54816 * 13 11 10 16 16 N 1.31513 * 120.00090 * 180.02562 * 15 13 11 17 17 Si 1.86801 * 120.00281 * 0.02562 * 15 13 11 18 18 H 1.48497 * 109.47272 * 89.99895 * 17 15 13 19 19 H 1.48501 * 109.47502 * 210.00016 * 17 15 13 20 20 H 1.48507 * 109.47043 * 329.99855 * 17 15 13 21 21 C 1.54883 * 104.19448 * 336.39425 * 11 10 9 22 22 C 1.52994 * 117.51410 * 145.70280 * 2 1 3 23 23 C 1.52994 * 60.00155 * 107.48119 * 22 2 1 24 24 H 1.09004 * 109.47371 * 64.30351 * 1 2 3 25 25 H 1.08999 * 109.47515 * 184.30126 * 1 2 3 26 26 H 1.09000 * 109.47631 * 304.30198 * 1 2 3 27 27 H 0.97004 * 119.99901 * 99.76439 * 3 2 1 28 28 H 0.97006 * 119.99450 * 0.02562 * 6 4 3 29 29 H 1.08997 * 110.03347 * 23.00132 * 9 7 6 30 30 H 1.09002 * 110.06909 * 261.59714 * 9 7 6 31 31 H 1.09000 * 110.03173 * 240.71510 * 10 9 7 32 32 H 1.08994 * 110.03518 * 119.27870 * 10 9 7 33 33 H 0.97003 * 120.00447 * 179.97438 * 16 15 13 34 34 H 1.09007 * 110.75169 * 156.25897 * 21 11 10 35 35 H 1.08999 * 110.75664 * 279.62394 * 21 11 10 36 36 H 1.09004 * 117.49826 * 214.97110 * 22 2 1 37 37 H 1.09000 * 117.50467 * 359.97438 * 22 2 1 38 38 H 1.09000 * 117.49644 * 252.50889 * 23 22 2 39 39 H 1.08997 * 117.50074 * 107.48830 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.1618 1.3217 0.0000 4 6 2.2739 2.0150 -1.1503 5 16 1.7944 1.3008 -2.6305 6 7 2.7634 3.2707 -1.1354 7 6 2.8858 4.0241 -2.3857 8 1 3.1675 3.3610 -3.2036 9 6 1.5638 4.7502 -2.7101 10 6 1.9472 6.1136 -3.3116 11 6 3.4889 6.1688 -3.3312 12 1 3.8694 5.8559 -4.3036 13 6 3.9711 7.5575 -2.9994 14 1 4.5844 7.7217 -2.1258 15 6 3.6293 8.6182 -3.8111 16 7 4.0506 9.8300 -3.5219 17 14 2.5679 8.3343 -5.3218 18 1 1.1361 8.4757 -4.9545 19 1 2.9126 9.3342 -6.3642 20 1 2.8113 6.9670 -5.8479 21 6 3.9187 5.1680 -2.2300 22 6 2.2368 -1.1210 0.7646 23 6 2.2364 -1.1207 -0.7653 24 1 -0.3634 0.4456 -0.9261 25 1 -0.3634 -1.0247 0.0771 26 1 -0.3634 0.5791 0.8489 27 1 2.4995 1.6978 0.8279 28 1 3.0354 3.6752 -0.2967 29 1 0.9835 4.8940 -1.7988 30 1 0.9872 4.1723 -3.4323 31 1 1.5529 6.9191 -2.6922 32 1 1.5574 6.1970 -4.3261 33 1 3.8105 10.5763 -4.0932 34 1 4.9295 4.8031 -2.4129 35 1 3.8444 5.6243 -1.2429 36 1 3.1720 -0.8751 1.2677 37 1 1.6119 -1.8585 1.2682 38 1 1.6112 -1.8583 -1.2685 39 1 3.1713 -0.8747 -1.2688 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840788763.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:45 Heat of formation + Delta-G solvation = 33.691725 kcal Electronic energy + Delta-G solvation = -18397.708032 eV Core-core repulsion = 15659.792295 eV Total energy + Delta-G solvation = -2737.915737 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.72700 -38.38981 -36.06703 -33.15757 -31.96270 -28.79019 -28.50697 -27.67976 -24.14604 -23.57837 -22.53209 -21.21152 -19.98062 -19.43332 -18.13334 -17.23487 -16.49304 -15.68367 -15.25002 -15.12520 -14.96264 -14.06995 -13.71225 -13.26101 -13.02754 -12.74307 -12.59672 -12.49587 -12.40123 -11.76399 -11.71647 -11.20673 -10.97179 -10.93295 -10.60242 -10.49074 -10.15451 -10.10026 -10.03044 -9.80609 -9.54343 -9.02645 -9.02134 -8.57358 -7.62586 -7.11097 -6.10303 -4.10178 1.51072 2.07299 2.59450 3.30547 3.39757 3.42699 3.44428 3.54474 4.41450 4.42266 4.59002 4.69091 5.10625 5.18952 5.24824 5.31130 5.39026 5.47235 5.54966 5.55809 5.81483 5.91560 5.97386 6.00606 6.06898 6.17865 6.26991 6.38294 6.43193 6.50684 6.59974 6.79077 6.86337 7.01653 7.07902 7.37106 7.48180 7.73911 8.47479 8.91591 9.52526 11.02664 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.044695 B = 0.004105 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.315287 B = 6818.762207 C = 7057.997693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.105 3.895 3 N -0.668 5.668 4 C 0.567 3.433 5 S -0.645 6.645 6 N -0.669 5.669 7 C 0.135 3.865 8 H 0.114 0.886 9 C -0.122 4.122 10 C -0.132 4.132 11 C 0.017 3.983 12 H 0.037 0.963 13 C -0.513 4.513 14 H 0.073 0.927 15 C 0.072 3.928 16 N -0.902 5.902 17 Si 0.879 3.121 18 H -0.277 1.277 19 H -0.294 1.294 20 H -0.262 1.262 21 C -0.110 4.110 22 C -0.183 4.183 23 C -0.131 4.131 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.396 0.604 28 H 0.395 0.605 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.264 0.736 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.687 -19.077 10.285 22.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.017 3.983 3 N -0.299 5.299 4 C 0.207 3.793 5 S -0.519 6.519 6 N -0.295 5.295 7 C 0.031 3.969 8 H 0.132 0.868 9 C -0.161 4.161 10 C -0.170 4.170 11 C -0.002 4.002 12 H 0.055 0.945 13 C -0.551 4.551 14 H 0.091 0.909 15 C -0.130 4.130 16 N -0.540 5.540 17 Si 0.708 3.292 18 H -0.203 1.203 19 H -0.221 1.221 20 H -0.187 1.187 21 C -0.148 4.148 22 C -0.221 4.221 23 C -0.169 4.169 24 H 0.099 0.901 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.232 0.768 28 H 0.231 0.769 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.113 0.887 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.040 -19.350 9.124 21.979 hybrid contribution -0.054 0.908 0.855 1.248 sum -5.094 -18.442 9.979 21.579 Atomic orbital electron populations 1.21510 0.90587 1.02565 1.03256 1.20539 0.92307 0.77662 1.07756 1.44262 1.59912 1.18292 1.07452 1.22332 0.81185 0.83876 0.91911 1.93313 1.68993 1.73927 1.15680 1.45517 1.60198 1.11070 1.12764 1.22653 0.97662 0.92612 0.83938 0.86792 1.22424 0.96048 0.96898 1.00738 1.22651 0.99820 0.95145 0.99392 1.19882 0.90855 0.95175 0.94283 0.94528 1.20966 1.32674 0.89485 1.11944 0.90928 1.24982 0.95624 0.94989 0.97402 1.69900 1.45884 0.99395 1.38852 0.86928 0.80999 0.78178 0.83120 1.20288 1.22114 1.18656 1.22742 0.96536 0.94148 1.01406 1.23552 1.02188 0.99677 0.96703 1.23181 1.02869 0.98740 0.92147 0.90149 0.91089 0.92574 0.76771 0.76891 0.92768 0.91176 0.91329 0.93495 0.92643 0.92012 0.91534 0.88709 0.87665 0.87652 0.87988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.09 9.93 37.16 0.37 -0.72 16 2 C 0.10 0.97 1.95 -131.83 -0.26 0.72 16 3 N -0.67 -6.56 5.44 -49.31 -0.27 -6.82 16 4 C 0.57 7.55 7.92 -86.92 -0.69 6.87 16 5 S -0.64 -11.13 25.69 -107.50 -2.76 -13.90 16 6 N -0.67 -8.61 5.12 -53.90 -0.28 -8.89 16 7 C 0.13 2.18 2.88 -66.26 -0.19 1.99 16 8 H 0.11 2.03 6.93 -51.93 -0.36 1.67 16 9 C -0.12 -2.14 6.49 -25.61 -0.17 -2.31 16 10 C -0.13 -2.74 4.65 -25.61 -0.12 -2.86 16 11 C 0.02 0.39 2.30 -90.11 -0.21 0.18 16 12 H 0.04 0.85 7.31 -51.92 -0.38 0.47 16 13 C -0.51 -13.83 8.98 -34.44 -0.31 -14.14 16 14 H 0.07 2.11 8.02 -52.49 -0.42 1.69 16 15 C 0.07 2.02 5.46 -17.82 -0.10 1.93 16 16 N -0.90 -27.17 13.96 55.43 0.77 -26.39 16 17 Si 0.88 21.58 24.67 -169.99 -4.19 17.39 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 20 H -0.26 -6.19 6.36 56.52 0.36 -5.83 16 21 C -0.11 -1.97 5.88 -24.73 -0.15 -2.12 16 22 C -0.18 -1.28 10.15 -26.74 -0.27 -1.55 16 23 C -0.13 -1.25 8.65 -26.74 -0.23 -1.48 16 24 H 0.08 0.95 7.62 -51.93 -0.40 0.55 16 25 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.40 2.78 8.85 -40.82 -0.36 2.42 16 28 H 0.39 4.02 8.55 -40.82 -0.35 3.67 16 29 H 0.05 0.90 8.04 -51.93 -0.42 0.48 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.07 1.50 7.82 -51.93 -0.41 1.10 16 32 H 0.05 0.99 5.73 -51.93 -0.30 0.70 16 33 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 1.16 7.93 -51.93 -0.41 0.75 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.10 1.17 8.04 -51.93 -0.42 0.75 16 LS Contribution 320.78 15.07 4.83 4.83 Total: -1.00 -31.81 320.78 -10.56 -42.36 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -6.35 Total: 4.92 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -2.31 Total: -13.50 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.23 Total: -42.10 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.19 Total: 17.39 kcal Atomic # 16 Polarization: -11.13 SS G_CDS: -2.76 Total: -13.90 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.81 -10.56 -42.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840788763.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.055 kcal (2) G-P(sol) polarization free energy of solvation -31.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds