Wall clock time and date at job start Mon Mar 30 2020 07:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46490 * 115.54865 * 2 1 4 4 C 1.34774 * 120.00191 * 279.76035 * 3 2 1 5 5 S 1.71201 * 120.00008 * 355.04380 * 4 3 2 6 6 N 1.34779 * 120.00421 * 175.03612 * 4 3 2 7 7 C 1.46494 * 120.00462 * 179.97438 * 6 4 3 8 8 H 1.08999 * 110.43551 * 323.92406 * 7 6 4 9 9 C 1.54273 * 110.48206 * 86.46084 * 7 6 4 10 10 C 1.53872 * 106.60087 * 142.29124 * 9 7 6 11 11 C 1.54278 * 106.59556 * 359.97438 * 10 9 7 12 12 H 1.09008 * 110.48058 * 95.20450 * 11 10 9 13 13 C 1.50702 * 110.48432 * 217.71174 * 11 10 9 14 14 H 1.07997 * 119.99595 * 118.54814 * 13 11 10 15 15 C 1.37872 * 120.00146 * 298.54816 * 13 11 10 16 16 N 1.31513 * 120.00090 * 180.02562 * 15 13 11 17 17 Si 1.86801 * 120.00281 * 0.02562 * 15 13 11 18 18 H 1.48497 * 109.47272 * 89.99895 * 17 15 13 19 19 H 1.48501 * 109.47502 * 210.00016 * 17 15 13 20 20 H 1.48507 * 109.47043 * 329.99855 * 17 15 13 21 21 C 1.54883 * 104.19448 * 336.39425 * 11 10 9 22 22 C 1.52994 * 117.51410 * 145.70280 * 2 1 3 23 23 C 1.52994 * 60.00155 * 107.48119 * 22 2 1 24 24 H 1.09004 * 109.47371 * 64.30351 * 1 2 3 25 25 H 1.08999 * 109.47515 * 184.30126 * 1 2 3 26 26 H 1.09000 * 109.47631 * 304.30198 * 1 2 3 27 27 H 0.97004 * 119.99901 * 99.76439 * 3 2 1 28 28 H 0.97006 * 119.99450 * 0.02562 * 6 4 3 29 29 H 1.08997 * 110.03347 * 23.00132 * 9 7 6 30 30 H 1.09002 * 110.06909 * 261.59714 * 9 7 6 31 31 H 1.09000 * 110.03173 * 240.71510 * 10 9 7 32 32 H 1.08994 * 110.03518 * 119.27870 * 10 9 7 33 33 H 0.97003 * 120.00447 * 179.97438 * 16 15 13 34 34 H 1.09007 * 110.75169 * 156.25897 * 21 11 10 35 35 H 1.08999 * 110.75664 * 279.62394 * 21 11 10 36 36 H 1.09004 * 117.49826 * 214.97110 * 22 2 1 37 37 H 1.09000 * 117.50467 * 359.97438 * 22 2 1 38 38 H 1.09000 * 117.49644 * 252.50889 * 23 22 2 39 39 H 1.08997 * 117.50074 * 107.48830 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.1618 1.3217 0.0000 4 6 2.2739 2.0150 -1.1503 5 16 1.7944 1.3008 -2.6305 6 7 2.7634 3.2707 -1.1354 7 6 2.8858 4.0241 -2.3857 8 1 3.1675 3.3610 -3.2036 9 6 1.5638 4.7502 -2.7101 10 6 1.9472 6.1136 -3.3116 11 6 3.4889 6.1688 -3.3312 12 1 3.8694 5.8559 -4.3036 13 6 3.9711 7.5575 -2.9994 14 1 4.5844 7.7217 -2.1258 15 6 3.6293 8.6182 -3.8111 16 7 4.0506 9.8300 -3.5219 17 14 2.5679 8.3343 -5.3218 18 1 1.1361 8.4757 -4.9545 19 1 2.9126 9.3342 -6.3642 20 1 2.8113 6.9670 -5.8479 21 6 3.9187 5.1680 -2.2300 22 6 2.2368 -1.1210 0.7646 23 6 2.2364 -1.1207 -0.7653 24 1 -0.3634 0.4456 -0.9261 25 1 -0.3634 -1.0247 0.0771 26 1 -0.3634 0.5791 0.8489 27 1 2.4995 1.6978 0.8279 28 1 3.0354 3.6752 -0.2967 29 1 0.9835 4.8940 -1.7988 30 1 0.9872 4.1723 -3.4323 31 1 1.5529 6.9191 -2.6922 32 1 1.5574 6.1970 -4.3261 33 1 3.8105 10.5763 -4.0932 34 1 4.9295 4.8031 -2.4129 35 1 3.8444 5.6243 -1.2429 36 1 3.1720 -0.8751 1.2677 37 1 1.6119 -1.8585 1.2682 38 1 1.6112 -1.8583 -1.2685 39 1 3.1713 -0.8747 -1.2688 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840788763.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:45 Heat of formation + Delta-G solvation = 13.490336 kcal Electronic energy + Delta-G solvation = -18398.584030 eV Core-core repulsion = 15659.792295 eV Total energy + Delta-G solvation = -2738.791735 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.74285 -39.57294 -37.31124 -34.74177 -33.54014 -30.24846 -29.52634 -29.10809 -25.64243 -24.99664 -23.22820 -22.34089 -21.15164 -21.12157 -19.24199 -18.85015 -17.81163 -16.84957 -16.77053 -16.38656 -15.98474 -15.71031 -14.91129 -14.76562 -14.19402 -14.08879 -13.99488 -13.57310 -13.37615 -13.21121 -12.81144 -12.51602 -12.36393 -12.23046 -12.15610 -11.87532 -11.74016 -11.60378 -11.36892 -11.31351 -10.97334 -10.82922 -10.71487 -10.07065 -8.89359 -8.42281 -8.28912 -6.31516 0.41630 0.97343 1.34534 1.38610 1.47653 1.51456 2.35000 2.56629 2.78520 3.07161 3.70410 3.75041 3.85760 3.93478 4.01638 4.06398 4.43784 4.56244 4.63947 4.67178 4.77525 4.83288 4.85221 4.86203 4.92126 4.96656 5.07941 5.12573 5.18765 5.25619 5.28902 5.38666 5.41739 5.58874 5.66933 5.77504 5.98103 6.31399 6.44045 6.75056 7.34554 8.87441 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.044695 B = 0.004105 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.315287 B = 6818.762207 C = 7057.997693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.084 3.916 3 N -0.644 5.644 4 C 0.586 3.414 5 S -0.721 6.721 6 N -0.659 5.659 7 C 0.154 3.846 8 H 0.102 0.898 9 C -0.111 4.111 10 C -0.128 4.128 11 C 0.009 3.991 12 H 0.030 0.970 13 C -0.510 4.510 14 H 0.041 0.959 15 C 0.017 3.983 16 N -0.950 5.950 17 Si 0.934 3.066 18 H -0.267 1.267 19 H -0.297 1.297 20 H -0.247 1.247 21 C -0.099 4.099 22 C -0.145 4.145 23 C -0.149 4.149 24 H 0.048 0.952 25 H 0.089 0.911 26 H 0.066 0.934 27 H 0.415 0.585 28 H 0.413 0.587 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.043 0.957 33 H 0.264 0.736 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.129 0.871 38 H 0.104 0.896 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.416 -21.173 12.004 24.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.003 4.003 3 N -0.275 5.275 4 C 0.222 3.778 5 S -0.596 6.596 6 N -0.287 5.287 7 C 0.049 3.951 8 H 0.120 0.880 9 C -0.150 4.150 10 C -0.167 4.167 11 C -0.011 4.011 12 H 0.048 0.952 13 C -0.548 4.548 14 H 0.059 0.941 15 C -0.181 4.181 16 N -0.591 5.591 17 Si 0.760 3.240 18 H -0.192 1.192 19 H -0.224 1.224 20 H -0.171 1.171 21 C -0.137 4.137 22 C -0.183 4.183 23 C -0.187 4.187 24 H 0.067 0.933 25 H 0.108 0.892 26 H 0.085 0.915 27 H 0.255 0.745 28 H 0.252 0.748 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.125 0.875 37 H 0.147 0.853 38 H 0.122 0.878 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.767 -21.483 10.911 24.776 hybrid contribution 0.238 1.532 0.454 1.616 sum -5.529 -19.951 11.365 23.618 Atomic orbital electron populations 1.21465 0.90299 1.03706 1.01995 1.20837 0.92666 0.77384 1.09392 1.44248 1.58056 1.18161 1.07009 1.21833 0.80566 0.83724 0.91664 1.93520 1.71996 1.75238 1.18848 1.45097 1.60332 1.10769 1.12533 1.22156 0.96119 0.91893 0.84912 0.88025 1.22294 0.96763 0.94916 1.01020 1.22498 0.98257 0.96678 0.99234 1.19857 0.92144 0.93578 0.95494 0.95160 1.21285 1.31259 0.91842 1.10376 0.94099 1.25762 0.97134 0.94722 1.00434 1.70033 1.48080 1.00453 1.40501 0.86032 0.79735 0.78569 0.79641 1.19236 1.22402 1.17131 1.22568 0.97471 0.93609 1.00097 1.23642 1.02339 0.97692 0.94644 1.23098 1.02013 0.99316 0.94291 0.93302 0.89218 0.91477 0.74490 0.74760 0.91431 0.91474 0.92717 0.93877 0.92653 0.91127 0.90907 0.87453 0.85266 0.87766 0.90238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.84 9.93 71.98 0.71 -1.12 16 2 C 0.08 1.34 1.95 3.60 0.01 1.34 16 3 N -0.64 -10.71 5.44 -309.92 -1.69 -12.39 16 4 C 0.59 14.36 7.92 179.05 1.42 15.78 16 5 S -0.72 -24.57 25.69 -56.49 -1.45 -26.03 16 6 N -0.66 -15.22 5.12 -324.44 -1.66 -16.88 16 7 C 0.15 4.70 2.88 46.08 0.13 4.83 16 8 H 0.10 3.49 6.93 -2.39 -0.02 3.47 16 9 C -0.11 -3.69 6.49 31.32 0.20 -3.49 16 10 C -0.13 -5.19 4.65 31.32 0.15 -5.04 16 11 C 0.01 0.38 2.30 -10.46 -0.02 0.36 16 12 H 0.03 1.38 7.31 -2.38 -0.02 1.36 16 13 C -0.51 -27.81 8.98 25.60 0.23 -27.58 16 14 H 0.04 2.43 8.02 -2.91 -0.02 2.41 16 15 C 0.02 0.95 5.46 84.65 0.46 1.41 16 16 N -0.95 -58.56 13.96 21.45 0.30 -58.26 16 17 Si 0.93 44.59 24.67 68.60 1.69 46.28 16 18 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 20 H -0.25 -11.13 6.36 99.48 0.63 -10.49 16 21 C -0.10 -3.40 5.88 31.89 0.19 -3.21 16 22 C -0.15 -1.46 10.15 30.59 0.31 -1.15 16 23 C -0.15 -2.60 8.65 30.59 0.26 -2.33 16 24 H 0.05 1.11 7.62 -2.38 -0.02 1.09 16 25 H 0.09 1.06 8.10 -2.39 -0.02 1.04 16 26 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.42 4.11 8.85 -92.71 -0.82 3.29 16 28 H 0.41 6.94 8.55 -92.70 -0.79 6.14 16 29 H 0.07 2.07 8.04 -2.39 -0.02 2.05 16 30 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.05 2.35 7.82 -2.39 -0.02 2.33 16 32 H 0.04 1.76 5.73 -2.39 -0.01 1.74 16 33 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 34 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 35 H 0.07 2.41 7.93 -2.39 -0.02 2.39 16 36 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.08 1.77 8.04 -2.39 -0.02 1.75 16 Total: -1.00 -71.10 320.78 0.61 -70.50 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -0.64 Total: 16.99 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: 4.05 Total: -20.21 kcal Atomic # 7 Polarization: -84.49 SS G_CDS: -3.05 Total: -87.54 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.69 Total: 46.28 kcal Atomic # 16 Polarization: -24.57 SS G_CDS: -1.45 Total: -26.03 kcal Total: -71.10 0.61 -70.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840788763.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.986 kcal (2) G-P(sol) polarization free energy of solvation -71.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds