Wall clock time and date at job start Mon Mar 30 2020 06:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29950 * 126.28636 * 2 1 4 4 O 1.21302 * 110.24859 * 180.02562 * 3 2 1 5 5 C 1.33645 * 109.81374 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.54901 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.46888 * 165.02604 * 6 5 4 8 8 C 1.52998 * 109.47456 * 285.02487 * 6 5 4 9 9 O 1.45202 * 109.46838 * 45.03065 * 6 5 4 10 10 C 1.34230 * 116.99836 * 150.00117 * 9 6 5 11 11 O 1.20833 * 119.99930 * 359.97438 * 10 9 6 12 12 C 1.50697 * 120.00262 * 180.27336 * 10 9 6 13 13 C 1.52996 * 109.47491 * 179.72204 * 12 10 9 14 14 C 1.53003 * 109.47301 * 179.97438 * 13 12 10 15 15 C 1.50693 * 109.47293 * 179.97438 * 14 13 12 16 16 H 1.08007 * 120.00180 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00333 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00026 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00350 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47530 * 60.00029 * 19 17 15 21 21 H 1.48499 * 109.47370 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47156 * 299.99594 * 19 17 15 23 23 N 1.31128 * 106.89593 * 0.22845 * 5 4 3 24 24 H 1.08992 * 109.47175 * 89.97517 * 1 2 3 25 25 H 1.08996 * 109.46921 * 209.97513 * 1 2 3 26 26 H 1.09003 * 109.46837 * 329.97477 * 1 2 3 27 27 H 1.08995 * 109.46854 * 179.97438 * 8 6 5 28 28 H 1.08999 * 109.47363 * 300.00610 * 8 6 5 29 29 H 1.09003 * 109.46976 * 60.00171 * 8 6 5 30 30 H 1.09004 * 109.46801 * 299.72165 * 12 10 9 31 31 H 1.09000 * 109.47461 * 59.71633 * 12 10 9 32 32 H 1.09004 * 109.47066 * 299.99799 * 13 12 10 33 33 H 1.08994 * 109.47405 * 59.99969 * 13 12 10 34 34 H 1.08996 * 109.47187 * 300.00268 * 14 13 12 35 35 H 1.09008 * 109.46785 * 59.99617 * 14 13 12 36 36 H 0.97000 * 120.00497 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7124 -0.0005 5 6 3.5299 -0.6212 -0.0003 6 6 4.7970 -1.4369 -0.0014 7 1 4.5653 -2.4683 0.2646 8 6 5.4270 -1.3989 -1.3951 9 8 5.7285 -0.8852 0.9662 10 6 6.5797 -1.7431 1.5504 11 8 6.5471 -2.9163 1.2632 12 6 7.5714 -1.2442 2.5696 13 6 8.4104 -2.4168 3.0813 14 6 9.4177 -1.9102 4.1155 15 6 10.2438 -3.0652 4.6200 16 1 10.0682 -4.0611 4.2406 17 6 11.2244 -2.8506 5.5651 18 7 11.4386 -1.6379 6.0268 19 14 12.2487 -4.2822 6.1900 20 1 12.9755 -4.9040 5.0540 21 1 13.2263 -3.7905 7.1939 22 1 11.3584 -5.2904 6.8194 23 7 2.3031 -1.0841 -0.0047 24 1 -0.3633 0.0004 -1.0276 25 1 -0.3633 -0.8902 0.5134 26 1 -0.3633 0.8898 0.5142 27 1 6.3437 -1.9886 -1.3956 28 1 4.7277 -1.8130 -2.1214 29 1 5.6587 -0.3675 -1.6610 30 1 8.2249 -0.5038 2.1083 31 1 7.0374 -0.7883 3.4033 32 1 7.7569 -3.1573 3.5425 33 1 8.9445 -2.8726 2.2476 34 1 10.0712 -1.1699 3.6540 35 1 8.8840 -1.4540 4.9494 36 1 12.1287 -1.4868 6.6915 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847645126.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:04 Heat of formation + Delta-G solvation = -36.294378 kcal Electronic energy + Delta-G solvation = -19567.512053 eV Core-core repulsion = 16247.975525 eV Total energy + Delta-G solvation = -3319.536528 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.92764 -40.64884 -37.14555 -36.41483 -34.38820 -34.06478 -32.18736 -31.34100 -29.44829 -28.21227 -25.54201 -24.23263 -23.69505 -21.95965 -20.77671 -19.91438 -18.48484 -18.00138 -17.62430 -16.72288 -16.37228 -16.13623 -14.96729 -14.54388 -14.40975 -14.27620 -13.97128 -13.60522 -13.39631 -13.13710 -12.68742 -12.56457 -12.33276 -11.95603 -11.84050 -11.79134 -11.50748 -11.36163 -11.07992 -10.83649 -10.75455 -10.63642 -10.41481 -10.25096 -9.78256 -9.44185 -9.13875 -8.36162 -6.01669 -4.03938 0.70253 1.77604 2.19939 2.31620 2.51420 3.34147 3.37910 3.38277 3.41538 3.72035 4.35429 4.43835 4.45929 4.65585 4.82039 4.98177 5.01930 5.14006 5.28930 5.31085 5.34433 5.49529 5.53650 5.56082 5.62126 5.69599 5.98249 6.30829 6.55792 6.75475 7.01685 7.63447 7.74749 7.76074 7.81249 7.97572 8.39778 9.02557 9.60361 11.09699 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.043497 B = 0.002862 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.567313 B = 9780.727695 C = 9942.733181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.167 3.833 3 N -0.382 5.382 4 O 0.096 5.904 5 C 0.190 3.810 6 C 0.180 3.820 7 H 0.132 0.868 8 C -0.167 4.167 9 O -0.352 6.352 10 C 0.466 3.534 11 O -0.499 6.499 12 C -0.110 4.110 13 C -0.100 4.100 14 C 0.021 3.979 15 C -0.521 4.521 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.896 5.896 19 Si 0.893 3.107 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.277 1.277 23 N -0.470 5.470 24 H 0.089 0.911 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.019 0.981 35 H 0.018 0.982 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.306 4.231 -14.410 23.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.105 4.105 3 N -0.088 5.088 4 O 0.036 5.964 5 C -0.031 4.031 6 C 0.123 3.877 7 H 0.149 0.851 8 C -0.225 4.225 9 O -0.269 6.269 10 C 0.309 3.691 11 O -0.384 6.384 12 C -0.148 4.148 13 C -0.138 4.138 14 C -0.016 4.016 15 C -0.560 4.560 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 N -0.206 5.206 24 H 0.108 0.892 25 H 0.111 0.889 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.865 4.482 -14.388 24.145 hybrid contribution 0.657 -0.812 0.365 1.106 sum -18.208 3.670 -14.023 23.273 Atomic orbital electron populations 1.20162 0.82577 1.04908 1.04400 1.25962 1.00710 0.83218 1.00659 1.74674 0.89432 1.23921 1.20821 1.85352 1.22109 1.24286 1.64610 1.28281 0.96006 0.82323 0.96524 1.20742 0.80739 0.95461 0.90799 0.85089 1.22249 1.02698 1.04691 0.92901 1.86685 1.45017 1.42496 1.52736 1.24618 0.79680 0.84697 0.80070 1.90668 1.68378 1.18183 1.61198 1.21770 0.95031 1.02667 0.95301 1.21611 0.97453 0.94585 1.00149 1.19123 0.92887 0.96731 0.92856 1.21186 1.17519 0.94474 1.22783 0.92565 1.25015 0.97294 0.95677 0.96448 1.69947 1.33070 1.20241 1.30291 0.86636 0.80026 0.82611 0.78612 1.20196 1.21304 1.20217 1.71879 0.99173 1.29632 1.19884 0.89197 0.88853 0.89304 0.89309 0.89885 0.90374 0.87625 0.87797 0.92323 0.92249 0.96275 0.96329 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.41 10.51 36.01 0.38 -0.03 16 2 C 0.17 1.85 8.22 -156.37 -1.28 0.57 16 3 N -0.38 -4.78 12.16 30.90 0.38 -4.41 16 4 O 0.10 1.21 11.31 18.09 0.20 1.42 16 5 C 0.19 2.25 7.41 -13.06 -0.10 2.16 16 6 C 0.18 2.01 3.11 -27.89 -0.09 1.92 16 7 H 0.13 1.50 7.16 -51.93 -0.37 1.13 16 8 C -0.17 -1.44 9.53 37.16 0.35 -1.09 16 9 O -0.35 -4.58 9.86 -40.15 -0.40 -4.97 16 10 C 0.47 6.95 7.93 36.00 0.29 7.23 16 11 O -0.50 -8.53 15.20 -18.76 -0.29 -8.82 16 12 C -0.11 -1.70 5.81 -27.89 -0.16 -1.86 16 13 C -0.10 -2.00 4.44 -26.73 -0.12 -2.12 16 14 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 15 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 16 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 19 Si 0.89 21.58 29.54 -169.99 -5.02 16.55 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 N -0.47 -5.73 11.55 -9.86 -0.11 -5.85 16 24 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 33 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.02 0.48 8.14 -51.92 -0.42 0.05 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 321.56 15.07 4.85 4.85 Total: -1.00 -32.22 321.56 -5.92 -38.14 By element: Atomic # 1 Polarization: 0.14 SS G_CDS: -4.98 Total: -4.84 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -1.28 Total: -6.24 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 1.00 Total: -36.08 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: -0.48 Total: -12.37 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.22 -5.92 -38.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847645126.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.845 kcal (2) G-P(sol) polarization free energy of solvation -32.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds