Wall clock time and date at job start Mon Mar 30 2020 06:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29950 * 126.28636 * 2 1 4 4 O 1.21302 * 110.24859 * 180.02562 * 3 2 1 5 5 C 1.33645 * 109.81374 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.54901 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.46888 * 165.02604 * 6 5 4 8 8 C 1.52998 * 109.47456 * 285.02487 * 6 5 4 9 9 O 1.45202 * 109.46838 * 45.03065 * 6 5 4 10 10 C 1.34230 * 116.99836 * 150.00117 * 9 6 5 11 11 O 1.20833 * 119.99930 * 359.97438 * 10 9 6 12 12 C 1.50697 * 120.00262 * 180.27336 * 10 9 6 13 13 C 1.52996 * 109.47491 * 179.72204 * 12 10 9 14 14 C 1.53003 * 109.47301 * 179.97438 * 13 12 10 15 15 C 1.50693 * 109.47293 * 179.97438 * 14 13 12 16 16 H 1.08007 * 120.00180 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00333 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00026 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00350 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47530 * 60.00029 * 19 17 15 21 21 H 1.48499 * 109.47370 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47156 * 299.99594 * 19 17 15 23 23 N 1.31128 * 106.89593 * 0.22845 * 5 4 3 24 24 H 1.08992 * 109.47175 * 89.97517 * 1 2 3 25 25 H 1.08996 * 109.46921 * 209.97513 * 1 2 3 26 26 H 1.09003 * 109.46837 * 329.97477 * 1 2 3 27 27 H 1.08995 * 109.46854 * 179.97438 * 8 6 5 28 28 H 1.08999 * 109.47363 * 300.00610 * 8 6 5 29 29 H 1.09003 * 109.46976 * 60.00171 * 8 6 5 30 30 H 1.09004 * 109.46801 * 299.72165 * 12 10 9 31 31 H 1.09000 * 109.47461 * 59.71633 * 12 10 9 32 32 H 1.09004 * 109.47066 * 299.99799 * 13 12 10 33 33 H 1.08994 * 109.47405 * 59.99969 * 13 12 10 34 34 H 1.08996 * 109.47187 * 300.00268 * 14 13 12 35 35 H 1.09008 * 109.46785 * 59.99617 * 14 13 12 36 36 H 0.97000 * 120.00497 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7124 -0.0005 5 6 3.5299 -0.6212 -0.0003 6 6 4.7970 -1.4369 -0.0014 7 1 4.5653 -2.4683 0.2646 8 6 5.4270 -1.3989 -1.3951 9 8 5.7285 -0.8852 0.9662 10 6 6.5797 -1.7431 1.5504 11 8 6.5471 -2.9163 1.2632 12 6 7.5714 -1.2442 2.5696 13 6 8.4104 -2.4168 3.0813 14 6 9.4177 -1.9102 4.1155 15 6 10.2438 -3.0652 4.6200 16 1 10.0682 -4.0611 4.2406 17 6 11.2244 -2.8506 5.5651 18 7 11.4386 -1.6379 6.0268 19 14 12.2487 -4.2822 6.1900 20 1 12.9755 -4.9040 5.0540 21 1 13.2263 -3.7905 7.1939 22 1 11.3584 -5.2904 6.8194 23 7 2.3031 -1.0841 -0.0047 24 1 -0.3633 0.0004 -1.0276 25 1 -0.3633 -0.8902 0.5134 26 1 -0.3633 0.8898 0.5142 27 1 6.3437 -1.9886 -1.3956 28 1 4.7277 -1.8130 -2.1214 29 1 5.6587 -0.3675 -1.6610 30 1 8.2249 -0.5038 2.1083 31 1 7.0374 -0.7883 3.4033 32 1 7.7569 -3.1573 3.5425 33 1 8.9445 -2.8726 2.2476 34 1 10.0712 -1.1699 3.6540 35 1 8.8840 -1.4540 4.9494 36 1 12.1287 -1.4868 6.6915 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847645126.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:04 Heat of formation + Delta-G solvation = -56.609392 kcal Electronic energy + Delta-G solvation = -19568.392978 eV Core-core repulsion = 16247.975525 eV Total energy + Delta-G solvation = -3320.417453 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -46.81669 -41.80573 -38.28901 -37.29014 -36.16530 -34.99790 -34.06810 -32.20642 -30.12462 -29.93756 -26.64022 -25.79880 -24.59927 -23.27106 -21.98763 -21.33111 -19.39729 -18.98019 -18.87737 -18.30144 -17.64267 -17.42387 -16.52265 -15.95652 -15.75899 -15.13826 -14.71098 -14.54358 -14.45778 -14.20388 -13.95008 -13.81623 -13.38449 -13.28921 -13.16774 -12.70552 -12.64965 -12.60142 -12.51753 -12.45903 -12.25284 -12.08637 -11.72591 -11.55193 -11.38588 -11.19885 -11.09410 -10.51876 -8.18283 -6.28079 -0.21570 0.89409 1.07758 1.29000 1.42391 1.44534 1.52454 1.56275 2.43081 2.55469 2.92659 3.15438 3.49365 3.63517 3.68918 3.89036 4.13053 4.21361 4.33759 4.49741 4.54965 4.55892 4.59825 4.71603 4.74489 4.92820 5.01299 5.03596 5.06663 5.13433 5.23665 5.55619 5.75963 5.88679 6.28033 6.59246 6.88025 6.91576 7.40697 8.93062 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.043497 B = 0.002862 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.567313 B = 9780.727695 C = 9942.733181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.168 3.832 3 N -0.402 5.402 4 O 0.083 5.917 5 C 0.190 3.810 6 C 0.179 3.821 7 H 0.129 0.871 8 C -0.163 4.163 9 O -0.349 6.349 10 C 0.478 3.522 11 O -0.523 6.523 12 C -0.105 4.105 13 C -0.087 4.087 14 C 0.024 3.976 15 C -0.546 4.546 16 H 0.056 0.944 17 C 0.002 3.998 18 N -0.930 5.930 19 Si 0.960 3.040 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.269 1.269 23 N -0.485 5.485 24 H 0.109 0.891 25 H 0.104 0.896 26 H 0.100 0.900 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.118 0.882 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.005 0.995 35 H 0.002 0.998 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.140 3.834 -15.161 24.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.104 4.104 3 N -0.111 5.111 4 O 0.027 5.973 5 C -0.031 4.031 6 C 0.122 3.878 7 H 0.146 0.854 8 C -0.220 4.220 9 O -0.266 6.266 10 C 0.323 3.677 11 O -0.411 6.411 12 C -0.142 4.142 13 C -0.124 4.124 14 C -0.013 4.013 15 C -0.584 4.584 16 H 0.074 0.926 17 C -0.196 4.196 18 N -0.570 5.570 19 Si 0.785 3.215 20 H -0.193 1.193 21 H -0.207 1.207 22 H -0.195 1.195 23 N -0.221 5.221 24 H 0.128 0.872 25 H 0.122 0.878 26 H 0.119 0.881 27 H 0.105 0.895 28 H 0.119 0.881 29 H 0.105 0.895 30 H 0.143 0.857 31 H 0.136 0.864 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.023 0.977 35 H 0.020 0.980 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.697 4.094 -15.153 25.186 hybrid contribution 0.832 -0.659 0.571 1.205 sum -18.864 3.436 -14.582 24.089 Atomic orbital electron populations 1.20423 0.79657 1.06028 1.06003 1.26766 1.02336 0.82450 0.98893 1.74673 0.89548 1.24667 1.22262 1.85328 1.22419 1.24469 1.65102 1.28394 0.96219 0.82277 0.96195 1.20978 0.80326 0.94969 0.91566 0.85371 1.22267 1.02827 1.05408 0.91531 1.86633 1.44918 1.41964 1.53077 1.24233 0.79589 0.84229 0.79683 1.90667 1.69182 1.19145 1.62061 1.21567 0.95308 1.01059 0.96293 1.21294 0.96705 0.95889 0.98557 1.19020 0.93341 0.95548 0.93422 1.21661 1.18233 0.95388 1.23122 0.92610 1.25898 0.98574 0.98407 0.96674 1.70060 1.33813 1.22263 1.30902 0.85572 0.78406 0.79284 0.78229 1.19284 1.20735 1.19451 1.71913 0.99443 1.30256 1.20465 0.87219 0.87765 0.88097 0.89457 0.88109 0.89536 0.85682 0.86393 0.93201 0.92740 0.97699 0.98005 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.69 10.51 71.24 0.75 0.06 16 2 C 0.17 3.49 8.22 138.46 1.14 4.63 16 3 N -0.40 -9.70 12.16 -60.29 -0.73 -10.43 16 4 O 0.08 2.03 11.31 74.82 0.85 2.88 16 5 C 0.19 4.33 7.41 88.38 0.65 4.99 16 6 C 0.18 3.78 3.11 29.85 0.09 3.88 16 7 H 0.13 2.84 7.16 -2.39 -0.02 2.82 16 8 C -0.16 -2.54 9.53 71.98 0.69 -1.85 16 9 O -0.35 -8.65 9.86 -50.56 -0.50 -9.15 16 10 C 0.48 13.74 7.93 71.23 0.56 14.31 16 11 O -0.52 -17.49 15.20 21.94 0.33 -17.16 16 12 C -0.11 -3.14 5.81 29.85 0.17 -2.96 16 13 C -0.09 -3.45 4.44 30.59 0.14 -3.32 16 14 C 0.02 1.20 4.97 29.85 0.15 1.34 16 15 C -0.55 -30.84 9.11 25.60 0.23 -30.61 16 16 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 17 C 0.00 0.14 5.46 84.65 0.46 0.60 16 18 N -0.93 -55.59 13.29 21.45 0.28 -55.30 16 19 Si 0.96 44.11 29.54 68.60 2.03 46.13 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 N -0.48 -11.25 11.55 -303.18 -3.50 -14.76 16 24 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.10 0.92 8.14 -2.39 -0.02 0.91 16 26 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.13 3.28 8.14 -2.38 -0.02 3.26 16 31 H 0.12 3.22 8.14 -2.39 -0.02 3.21 16 32 H 0.05 2.05 8.10 -2.38 -0.02 2.03 16 33 H 0.05 2.20 8.10 -2.39 -0.02 2.18 16 34 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 36 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -68.68 321.56 4.87 -63.81 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: 1.08 Total: 2.92 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: 5.04 Total: -8.93 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -3.95 Total: -80.50 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: 0.68 Total: -23.44 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -68.68 4.87 -63.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847645126.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.199 kcal (2) G-P(sol) polarization free energy of solvation -68.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds