Wall clock time and date at job start Mon Mar 30 2020 06:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.29957 * 126.28604 * 2 1 4 4 O 1.21295 * 110.24679 * 179.68403 * 3 2 1 5 5 C 1.33642 * 109.81660 * 0.46756 * 4 3 2 6 6 C 1.50699 * 126.55161 * 179.80150 * 5 4 3 7 7 H 1.09002 * 109.46959 * 194.68733 * 6 5 4 8 8 C 1.53000 * 109.47083 * 74.68518 * 6 5 4 9 9 O 1.45198 * 109.47028 * 314.68891 * 6 5 4 10 10 C 1.34232 * 116.99973 * 210.00209 * 9 6 5 11 11 O 1.20828 * 120.00187 * 359.97438 * 10 9 6 12 12 C 1.50697 * 120.00321 * 180.02562 * 10 9 6 13 13 C 1.53004 * 109.47405 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47070 * 180.02562 * 13 12 10 15 15 C 1.50698 * 109.47015 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99958 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00315 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99813 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00229 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47181 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47369 * 120.00120 * 19 17 15 22 22 H 1.48506 * 109.47054 * 239.99781 * 19 17 15 23 23 N 1.31130 * 106.89392 * 359.54156 * 5 4 3 24 24 H 1.09006 * 109.47165 * 270.02254 * 1 2 3 25 25 H 1.09000 * 109.47590 * 30.02514 * 1 2 3 26 26 H 1.09004 * 109.46880 * 150.02792 * 1 2 3 27 27 H 1.08992 * 109.47399 * 299.99938 * 8 6 5 28 28 H 1.09004 * 109.46724 * 60.00424 * 8 6 5 29 29 H 1.09001 * 109.47194 * 179.97438 * 8 6 5 30 30 H 1.09006 * 109.47040 * 299.99732 * 12 10 9 31 31 H 1.09005 * 109.47258 * 59.99528 * 12 10 9 32 32 H 1.08999 * 109.47162 * 299.99709 * 13 12 10 33 33 H 1.08997 * 109.46982 * 59.99739 * 13 12 10 34 34 H 1.09006 * 109.47156 * 299.99705 * 14 13 12 35 35 H 1.08997 * 109.47484 * 59.99982 * 14 13 12 36 36 H 0.97004 * 120.00133 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4417 0.7124 0.0063 5 6 3.5298 -0.6211 0.0008 6 6 4.7969 -1.4368 0.0013 7 1 4.5652 -2.4682 -0.2645 8 6 5.4275 -1.3986 1.3948 9 8 5.7281 -0.8851 -0.9665 10 6 6.5791 -1.7430 -1.5511 11 8 6.5472 -2.9161 -1.2633 12 6 7.5750 -1.2430 -2.5655 13 6 8.4180 -2.4146 -3.0732 14 6 9.4295 -1.9068 -4.1026 15 6 10.2593 -3.0609 -4.6030 16 1 10.0832 -4.0569 -4.2244 17 6 11.2435 -2.8454 -5.5443 18 7 11.4576 -1.6326 -6.0059 19 14 12.2725 -4.2758 -6.1641 20 1 11.8371 -5.5265 -5.4923 21 1 12.0950 -4.4140 -7.6320 22 1 13.7042 -4.0238 -5.8602 23 7 2.3030 -1.0840 0.0005 24 1 -0.3634 0.0004 1.0277 25 1 -0.3634 0.8897 -0.5142 26 1 -0.3633 -0.8903 -0.5134 27 1 5.6592 -0.3673 1.6606 28 1 4.7284 -1.8128 2.1214 29 1 6.3437 -1.9890 1.3954 30 1 7.0443 -0.7876 -3.4018 31 1 8.2257 -0.5019 -2.1012 32 1 8.9486 -2.8696 -2.2368 33 1 7.7675 -3.1559 -3.5373 34 1 8.8992 -1.4515 -4.9391 35 1 10.0798 -1.1657 -3.6381 36 1 12.1498 -1.4809 -6.6684 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847645127.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:07 Heat of formation + Delta-G solvation = -36.354994 kcal Electronic energy + Delta-G solvation = -19567.363753 eV Core-core repulsion = 16247.824597 eV Total energy + Delta-G solvation = -3319.539156 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.92970 -40.64923 -37.14636 -36.41596 -34.38942 -34.06509 -32.18821 -31.34131 -29.44806 -28.21379 -25.54192 -24.23523 -23.69719 -21.96037 -20.77744 -19.91547 -18.48719 -17.99976 -17.62486 -16.72429 -16.37408 -16.14147 -14.96947 -14.54619 -14.40103 -14.27540 -13.97152 -13.60382 -13.39490 -13.13954 -12.68732 -12.56494 -12.34886 -11.95038 -11.84180 -11.79056 -11.50996 -11.36258 -11.07926 -10.87730 -10.75040 -10.59789 -10.41009 -10.24952 -9.78975 -9.44904 -9.11293 -8.37046 -6.02189 -4.04222 0.70161 1.77584 2.20284 2.31167 2.51634 3.31218 3.37946 3.39007 3.43923 3.71987 4.35410 4.43795 4.45820 4.65609 4.82044 4.98046 5.01927 5.13992 5.28868 5.31172 5.34163 5.49504 5.53599 5.56034 5.62106 5.69641 5.98195 6.30817 6.55717 6.75444 7.01616 7.63708 7.74539 7.76089 7.81228 7.97379 8.39593 9.02788 9.60218 11.09256 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.043663 B = 0.002861 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.120961 B = 9785.998490 C = 9947.105191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.167 3.833 3 N -0.382 5.382 4 O 0.096 5.904 5 C 0.190 3.810 6 C 0.180 3.820 7 H 0.132 0.868 8 C -0.168 4.168 9 O -0.352 6.352 10 C 0.466 3.534 11 O -0.499 6.499 12 C -0.110 4.110 13 C -0.100 4.100 14 C 0.020 3.980 15 C -0.520 4.520 16 H 0.057 0.943 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.892 3.108 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 N -0.470 5.470 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.376 4.202 14.393 23.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.106 4.106 3 N -0.088 5.088 4 O 0.036 5.964 5 C -0.031 4.031 6 C 0.123 3.877 7 H 0.149 0.851 8 C -0.225 4.225 9 O -0.269 6.269 10 C 0.309 3.691 11 O -0.384 6.384 12 C -0.148 4.148 13 C -0.138 4.138 14 C -0.017 4.017 15 C -0.558 4.558 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 N -0.206 5.206 24 H 0.108 0.892 25 H 0.107 0.893 26 H 0.111 0.889 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.107 0.893 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.938 4.445 14.371 24.186 hybrid contribution 0.667 -0.789 -0.377 1.100 sum -18.271 3.656 13.994 23.303 Atomic orbital electron populations 1.20163 0.82582 1.04908 1.04400 1.25959 1.00709 0.83220 1.00666 1.74675 0.89432 1.23921 1.20816 1.85348 1.22115 1.24292 1.64597 1.28282 0.96007 0.82323 0.96533 1.20741 0.80746 0.95459 0.90794 0.85087 1.22250 1.02704 1.04687 0.92902 1.86685 1.45064 1.42486 1.52703 1.24616 0.79700 0.84705 0.80044 1.90667 1.68432 1.18205 1.61118 1.21773 0.94922 1.02660 0.95418 1.21610 0.97406 0.94595 1.00177 1.19135 0.92872 0.96757 0.92917 1.21262 1.17106 0.94546 1.22875 0.92457 1.25022 0.97341 0.95677 0.96464 1.69971 1.32952 1.20184 1.30431 0.86525 0.80092 0.82740 0.78601 1.19680 1.21013 1.21007 1.71879 0.99178 1.29638 1.19867 0.89191 0.89304 0.88857 0.90365 0.89891 0.89308 0.87803 0.87620 0.92248 0.92320 0.96314 0.96265 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.41 10.51 36.00 0.38 -0.03 16 2 C 0.17 1.85 8.22 -156.37 -1.28 0.56 16 3 N -0.38 -4.78 12.16 30.90 0.38 -4.41 16 4 O 0.10 1.21 11.31 18.10 0.20 1.42 16 5 C 0.19 2.25 7.41 -13.06 -0.10 2.16 16 6 C 0.18 2.01 3.12 -27.88 -0.09 1.92 16 7 H 0.13 1.50 7.16 -51.93 -0.37 1.13 16 8 C -0.17 -1.44 9.53 37.16 0.35 -1.09 16 9 O -0.35 -4.58 9.86 -40.11 -0.40 -4.97 16 10 C 0.47 6.95 7.93 36.00 0.29 7.23 16 11 O -0.50 -8.53 15.20 -18.75 -0.29 -8.81 16 12 C -0.11 -1.70 5.81 -27.88 -0.16 -1.86 16 13 C -0.10 -2.00 4.44 -26.73 -0.12 -2.12 16 14 C 0.02 0.50 4.97 -27.89 -0.14 0.36 16 15 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 19 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 23 N -0.47 -5.73 11.55 -9.87 -0.11 -5.84 16 24 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 33 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 321.56 15.07 4.85 4.85 Total: -1.00 -32.27 321.56 -5.92 -38.19 By element: Atomic # 1 Polarization: 0.07 SS G_CDS: -4.98 Total: -4.91 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -1.28 Total: -6.23 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 1.00 Total: -36.06 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: -0.48 Total: -12.37 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.27 -5.92 -38.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847645127.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.831 kcal (2) G-P(sol) polarization free energy of solvation -32.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds