Wall clock time and date at job start Mon Mar 30 2020 06:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.29957 * 126.28604 * 2 1 4 4 O 1.21295 * 110.24679 * 179.68403 * 3 2 1 5 5 C 1.33642 * 109.81660 * 0.46756 * 4 3 2 6 6 C 1.50699 * 126.55161 * 179.80150 * 5 4 3 7 7 H 1.09002 * 109.46959 * 194.68733 * 6 5 4 8 8 C 1.53000 * 109.47083 * 74.68518 * 6 5 4 9 9 O 1.45198 * 109.47028 * 314.68891 * 6 5 4 10 10 C 1.34232 * 116.99973 * 210.00209 * 9 6 5 11 11 O 1.20828 * 120.00187 * 359.97438 * 10 9 6 12 12 C 1.50697 * 120.00321 * 180.02562 * 10 9 6 13 13 C 1.53004 * 109.47405 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47070 * 180.02562 * 13 12 10 15 15 C 1.50698 * 109.47015 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99958 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00315 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99813 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00229 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47181 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47369 * 120.00120 * 19 17 15 22 22 H 1.48506 * 109.47054 * 239.99781 * 19 17 15 23 23 N 1.31130 * 106.89392 * 359.54156 * 5 4 3 24 24 H 1.09006 * 109.47165 * 270.02254 * 1 2 3 25 25 H 1.09000 * 109.47590 * 30.02514 * 1 2 3 26 26 H 1.09004 * 109.46880 * 150.02792 * 1 2 3 27 27 H 1.08992 * 109.47399 * 299.99938 * 8 6 5 28 28 H 1.09004 * 109.46724 * 60.00424 * 8 6 5 29 29 H 1.09001 * 109.47194 * 179.97438 * 8 6 5 30 30 H 1.09006 * 109.47040 * 299.99732 * 12 10 9 31 31 H 1.09005 * 109.47258 * 59.99528 * 12 10 9 32 32 H 1.08999 * 109.47162 * 299.99709 * 13 12 10 33 33 H 1.08997 * 109.46982 * 59.99739 * 13 12 10 34 34 H 1.09006 * 109.47156 * 299.99705 * 14 13 12 35 35 H 1.08997 * 109.47484 * 59.99982 * 14 13 12 36 36 H 0.97004 * 120.00133 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4417 0.7124 0.0063 5 6 3.5298 -0.6211 0.0008 6 6 4.7969 -1.4368 0.0013 7 1 4.5652 -2.4682 -0.2645 8 6 5.4275 -1.3986 1.3948 9 8 5.7281 -0.8851 -0.9665 10 6 6.5791 -1.7430 -1.5511 11 8 6.5472 -2.9161 -1.2633 12 6 7.5750 -1.2430 -2.5655 13 6 8.4180 -2.4146 -3.0732 14 6 9.4295 -1.9068 -4.1026 15 6 10.2593 -3.0609 -4.6030 16 1 10.0832 -4.0569 -4.2244 17 6 11.2435 -2.8454 -5.5443 18 7 11.4576 -1.6326 -6.0059 19 14 12.2725 -4.2758 -6.1641 20 1 11.8371 -5.5265 -5.4923 21 1 12.0950 -4.4140 -7.6320 22 1 13.7042 -4.0238 -5.8602 23 7 2.3030 -1.0840 0.0005 24 1 -0.3634 0.0004 1.0277 25 1 -0.3634 0.8897 -0.5142 26 1 -0.3633 -0.8903 -0.5134 27 1 5.6592 -0.3673 1.6606 28 1 4.7284 -1.8128 2.1214 29 1 6.3437 -1.9890 1.3954 30 1 7.0443 -0.7876 -3.4018 31 1 8.2257 -0.5019 -2.1012 32 1 8.9486 -2.8696 -2.2368 33 1 7.7675 -3.1559 -3.5373 34 1 8.8992 -1.4515 -4.9391 35 1 10.0798 -1.1657 -3.6381 36 1 12.1498 -1.4809 -6.6684 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847645127.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:07 Heat of formation + Delta-G solvation = -56.712367 kcal Electronic energy + Delta-G solvation = -19568.246515 eV Core-core repulsion = 16247.824597 eV Total energy + Delta-G solvation = -3320.421918 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -46.81829 -41.80587 -38.28948 -37.29081 -36.16664 -34.99777 -34.06861 -32.20615 -30.12427 -29.93874 -26.64118 -25.80017 -24.60127 -23.27175 -21.98750 -21.33114 -19.39965 -18.97774 -18.87932 -18.30694 -17.64324 -17.42596 -16.51835 -15.95532 -15.75862 -15.13982 -14.71655 -14.54217 -14.45717 -14.21709 -13.95103 -13.80707 -13.38434 -13.28725 -13.17643 -12.71970 -12.66324 -12.61349 -12.52742 -12.40644 -12.25220 -12.08576 -11.72578 -11.55802 -11.38923 -11.18080 -11.08832 -10.52926 -8.18775 -6.28299 -0.21622 0.89523 1.07793 1.28957 1.41345 1.42398 1.54967 1.56664 2.42873 2.55474 2.92664 3.15129 3.49388 3.63538 3.69001 3.89057 4.13043 4.21373 4.33776 4.49803 4.54904 4.55916 4.59863 4.71636 4.74552 4.92799 5.01379 5.03584 5.06677 5.13481 5.23676 5.55979 5.75891 5.88683 6.27954 6.59297 6.88197 6.91607 7.40590 8.92982 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.043663 B = 0.002861 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.120961 B = 9785.998490 C = 9947.105191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.168 3.832 3 N -0.402 5.402 4 O 0.083 5.917 5 C 0.190 3.810 6 C 0.179 3.821 7 H 0.129 0.871 8 C -0.163 4.163 9 O -0.349 6.349 10 C 0.478 3.522 11 O -0.523 6.523 12 C -0.105 4.105 13 C -0.087 4.087 14 C 0.023 3.977 15 C -0.544 4.544 16 H 0.055 0.945 17 C 0.002 3.998 18 N -0.930 5.930 19 Si 0.961 3.039 20 H -0.266 1.266 21 H -0.278 1.278 22 H -0.277 1.277 23 N -0.485 5.485 24 H 0.110 0.890 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.086 0.914 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.118 0.882 31 H 0.125 0.875 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.002 0.998 35 H 0.005 0.995 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.203 3.835 15.126 24.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.104 4.104 3 N -0.111 5.111 4 O 0.027 5.973 5 C -0.031 4.031 6 C 0.122 3.878 7 H 0.146 0.854 8 C -0.220 4.220 9 O -0.266 6.266 10 C 0.323 3.677 11 O -0.411 6.411 12 C -0.142 4.142 13 C -0.124 4.124 14 C -0.014 4.014 15 C -0.582 4.582 16 H 0.074 0.926 17 C -0.196 4.196 18 N -0.571 5.571 19 Si 0.786 3.214 20 H -0.190 1.190 21 H -0.204 1.204 22 H -0.203 1.203 23 N -0.221 5.221 24 H 0.128 0.872 25 H 0.119 0.881 26 H 0.122 0.878 27 H 0.105 0.895 28 H 0.119 0.881 29 H 0.105 0.895 30 H 0.136 0.864 31 H 0.143 0.857 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.020 0.980 35 H 0.023 0.977 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.761 4.090 15.117 25.214 hybrid contribution 0.842 -0.645 -0.579 1.209 sum -18.919 3.445 14.537 24.107 Atomic orbital electron populations 1.20424 0.79662 1.06025 1.06007 1.26763 1.02334 0.82451 0.98900 1.74674 0.89550 1.24666 1.22258 1.85324 1.22423 1.24472 1.65087 1.28394 0.96218 0.82278 0.96203 1.20978 0.80335 0.94967 0.91560 0.85371 1.22267 1.02832 1.05404 0.91534 1.86633 1.44966 1.41954 1.53042 1.24233 0.79611 0.84236 0.79655 1.90666 1.69238 1.19169 1.61982 1.21570 0.95184 1.01053 0.96420 1.21293 0.96662 0.95894 0.98592 1.19030 0.93337 0.95567 0.93462 1.21712 1.17842 0.95387 1.23215 0.92644 1.25901 0.98633 0.98394 0.96685 1.70077 1.33736 1.22187 1.31066 0.85461 0.78405 0.79478 0.78092 1.18973 1.20378 1.20268 1.71912 0.99450 1.30265 1.20448 0.87207 0.88098 0.87773 0.89526 0.88110 0.89461 0.86392 0.85675 0.92747 0.93205 0.97979 0.97676 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.69 10.51 71.23 0.75 0.06 16 2 C 0.17 3.49 8.22 138.46 1.14 4.62 16 3 N -0.40 -9.70 12.16 -60.32 -0.73 -10.43 16 4 O 0.08 2.03 11.31 74.86 0.85 2.88 16 5 C 0.19 4.33 7.41 88.38 0.65 4.99 16 6 C 0.18 3.78 3.12 29.85 0.09 3.87 16 7 H 0.13 2.84 7.16 -2.39 -0.02 2.82 16 8 C -0.16 -2.54 9.53 71.98 0.69 -1.85 16 9 O -0.35 -8.66 9.86 -50.62 -0.50 -9.15 16 10 C 0.48 13.74 7.93 71.23 0.56 14.31 16 11 O -0.52 -17.50 15.20 21.96 0.33 -17.17 16 12 C -0.11 -3.14 5.81 29.85 0.17 -2.96 16 13 C -0.09 -3.45 4.44 30.59 0.14 -3.31 16 14 C 0.02 1.16 4.97 29.85 0.15 1.31 16 15 C -0.54 -30.69 9.11 25.60 0.23 -30.46 16 16 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 17 C 0.00 0.10 5.46 84.65 0.46 0.56 16 18 N -0.93 -55.54 13.29 21.45 0.28 -55.25 16 19 Si 0.96 44.15 29.54 68.60 2.03 46.18 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 23 N -0.48 -11.25 11.55 -303.21 -3.50 -14.76 16 24 H 0.11 0.79 8.14 -2.38 -0.02 0.77 16 25 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.12 3.22 8.14 -2.38 -0.02 3.20 16 31 H 0.13 3.28 8.14 -2.38 -0.02 3.26 16 32 H 0.05 2.20 8.10 -2.39 -0.02 2.18 16 33 H 0.05 2.05 8.10 -2.39 -0.02 2.03 16 34 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 35 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.26 14.77 8.31 -92.70 -0.77 14.00 16 Total: -1.00 -68.76 321.56 4.87 -63.88 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: 1.08 Total: 2.68 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: 5.04 Total: -8.86 kcal Atomic # 7 Polarization: -76.49 SS G_CDS: -3.95 Total: -80.44 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: 0.68 Total: -23.44 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -68.76 4.87 -63.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847645127.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.171 kcal (2) G-P(sol) polarization free energy of solvation -68.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds