Wall clock time and date at job start Mon Mar 30 2020 07:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00291 * 2 1 4 4 H 1.48500 * 109.46984 * 240.00383 * 3 2 1 5 5 H 1.48502 * 109.47015 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47301 * 120.00068 * 3 2 1 7 7 C 1.37878 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99764 * 173.91940 * 7 2 1 9 9 C 1.50697 * 119.99934 * 353.91524 * 7 2 1 10 10 C 1.53001 * 115.55187 * 84.89122 * 9 7 2 11 11 S 1.81397 * 109.46885 * 39.93032 * 10 9 7 12 12 C 1.81403 * 102.99838 * 179.97438 * 11 10 9 13 13 C 1.53005 * 109.47278 * 179.97438 * 12 11 10 14 14 H 1.08996 * 115.60244 * 29.10904 * 13 12 11 15 15 C 1.53294 * 117.53955 * 243.21432 * 13 12 11 16 16 C 1.51568 * 117.53537 * 174.99959 * 13 12 11 17 17 C 1.53987 * 122.50282 * 355.49835 * 16 13 12 18 18 C 1.54640 * 102.01336 * 184.25538 * 17 16 13 19 19 O 1.43339 * 107.69225 * 20.09756 * 18 17 16 20 20 C 1.43935 * 110.11961 * 1.51444 * 19 18 17 21 21 C 1.53006 * 117.51971 * 230.59302 * 9 7 2 22 22 C 1.52995 * 60.00356 * 107.48132 * 21 9 7 23 23 H 0.97004 * 119.99388 * 354.96228 * 1 2 3 24 24 H 1.09008 * 109.46679 * 279.93201 * 10 9 7 25 25 H 1.08997 * 109.47553 * 159.93514 * 10 9 7 26 26 H 1.09007 * 109.47158 * 60.00368 * 12 11 10 27 27 H 1.08997 * 109.47582 * 300.00397 * 12 11 10 28 28 H 1.08997 * 117.54128 * 145.23513 * 15 13 12 29 29 H 1.09011 * 117.59232 * 359.97109 * 15 13 12 30 30 H 1.09003 * 110.92130 * 66.08091 * 17 16 13 31 31 H 1.08997 * 110.91786 * 302.43872 * 17 16 13 32 32 H 1.08995 * 109.81352 * 260.55133 * 18 17 16 33 33 H 1.08997 * 109.86667 * 139.67237 * 18 17 16 34 34 H 1.08991 * 110.34756 * 96.04592 * 20 19 18 35 35 H 1.09005 * 110.34328 * 218.31183 * 20 19 18 36 36 H 1.08998 * 117.49990 * 214.97742 * 21 9 7 37 37 H 1.09004 * 117.49333 * 359.97438 * 21 9 7 38 38 H 1.09003 * 117.49969 * 252.51701 * 22 21 9 39 39 H 1.09003 * 117.50019 * 107.48857 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0800 -1.1967 -0.0996 9 6 1.2573 -2.4955 0.1372 10 6 0.6978 -3.0760 -1.1631 11 16 1.9033 -2.8414 -2.4980 12 6 1.0739 -3.5815 -3.9316 13 6 1.9765 -3.4616 -5.1611 14 1 3.0477 -3.4521 -4.9599 15 6 1.4682 -2.6152 -6.3338 16 6 1.5098 -4.1268 -6.4406 17 6 0.2338 -4.9862 -6.5085 18 6 0.2727 -5.5056 -7.9645 19 8 1.6220 -5.3867 -8.4335 20 6 2.4651 -4.8664 -7.3894 21 6 1.7469 -3.4829 1.1986 22 6 0.4437 -2.7112 1.4149 23 1 -0.4849 0.8369 0.0738 24 1 -0.2312 -2.5660 -1.4185 25 1 0.5035 -4.1405 -1.0318 26 1 0.1354 -3.0592 -4.1180 27 1 0.8706 -4.6333 -3.7308 28 1 2.2051 -2.0493 -6.9036 29 1 0.4907 -2.1440 -6.2300 30 1 -0.6544 -4.3785 -6.3357 31 1 0.2828 -5.8122 -5.7990 32 1 -0.3896 -4.9057 -8.5886 33 1 -0.0378 -6.5500 -7.9936 34 1 2.9650 -5.6806 -6.8649 35 1 3.1985 -4.1746 -7.8039 36 1 1.6705 -4.5460 0.9704 37 1 2.6100 -3.1913 1.7971 38 1 0.4491 -1.9119 2.1560 39 1 -0.4903 -3.2667 1.3291 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902543899.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:46 Heat of formation + Delta-G solvation = -5.195824 kcal Electronic energy + Delta-G solvation = -17993.481793 eV Core-core repulsion = 15221.587014 eV Total energy + Delta-G solvation = -2771.894779 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.124 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.05937 -36.63094 -36.52969 -31.91962 -30.63627 -29.19539 -27.68067 -26.82465 -25.26835 -22.62021 -21.32127 -21.13182 -19.50213 -19.01437 -16.36129 -16.27429 -16.20967 -15.51699 -14.93737 -14.60782 -14.44386 -13.86887 -13.65750 -13.31173 -13.21421 -13.04656 -12.62123 -12.14572 -11.92682 -11.68868 -11.58912 -11.32485 -11.03855 -10.95297 -10.84143 -10.49776 -10.19980 -10.05249 -9.91741 -9.65805 -9.59061 -9.09377 -8.77311 -8.41846 -8.02290 -6.64144 -6.02482 -4.06445 2.45430 3.35013 3.38493 3.42625 3.50646 3.63734 3.84773 4.18061 4.44826 4.59760 4.72464 4.75014 4.98876 5.26766 5.29846 5.32111 5.33168 5.47166 5.54014 5.56567 5.62997 5.72306 5.74424 5.81394 5.85121 5.96005 5.98551 6.16879 6.27342 6.41544 6.49084 6.70992 6.79779 6.81781 7.03992 7.35419 7.46560 7.90004 8.39297 8.92888 9.58723 11.06734 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.025753 B = 0.004316 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.993681 B = 6486.467729 C = 7066.905592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.078 3.922 3 Si 0.887 3.113 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.482 4.482 8 H 0.062 0.938 9 C 0.056 3.944 10 C -0.032 4.032 11 S -0.208 6.208 12 C -0.084 4.084 13 C -0.097 4.097 14 H 0.115 0.885 15 C -0.149 4.149 16 C -0.168 4.168 17 C -0.119 4.119 18 C 0.056 3.944 19 O -0.386 6.386 20 C 0.090 3.910 21 C -0.208 4.208 22 C -0.152 4.152 23 H 0.259 0.741 24 H 0.076 0.924 25 H 0.044 0.956 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.050 -8.760 -11.522 14.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.125 4.125 3 Si 0.715 3.285 4 H -0.199 1.199 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.521 4.521 8 H 0.080 0.920 9 C 0.055 3.945 10 C -0.180 4.180 11 S 0.021 5.979 12 C -0.232 4.232 13 C -0.116 4.116 14 H 0.133 0.867 15 C -0.185 4.185 16 C -0.170 4.170 17 C -0.156 4.156 18 C -0.021 4.021 19 O -0.305 6.305 20 C 0.014 3.986 21 C -0.245 4.245 22 C -0.192 4.192 23 H 0.069 0.931 24 H 0.095 0.905 25 H 0.063 0.937 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.833 -8.225 -11.780 14.392 hybrid contribution -1.091 0.397 0.320 1.205 sum -0.258 -7.828 -11.460 13.881 Atomic orbital electron populations 1.70001 1.05921 1.26856 1.48779 1.24881 0.94694 0.98761 0.94207 0.86731 0.79791 0.83217 0.78804 1.19858 1.21398 1.20354 1.20264 0.92812 0.88413 1.50569 0.92011 1.18462 0.97834 0.93985 0.84248 1.22997 0.98874 0.99379 0.96799 1.87130 1.29562 1.78332 1.02848 1.22933 1.00706 1.02654 0.96879 1.21671 1.00047 1.02584 0.87293 0.86659 1.22994 1.03291 0.91062 1.01198 1.22236 0.97880 0.95745 1.01093 1.22459 0.97023 0.99307 0.96836 1.23095 0.84318 1.00453 0.94191 1.88431 1.18860 1.85977 1.37277 1.22660 0.92195 0.96387 0.87356 1.23066 0.98495 0.95564 1.07352 1.22563 0.92196 1.01254 1.03163 0.93081 0.90540 0.93689 0.90909 0.91191 0.88248 0.88244 0.89943 0.90074 0.91374 0.91549 0.91501 0.89744 0.91680 0.90253 0.89831 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.44 12.93 55.43 0.72 -23.72 16 2 C 0.08 2.11 5.39 -17.82 -0.10 2.01 16 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.48 -12.90 7.55 -34.44 -0.26 -13.16 16 8 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 9 C 0.06 1.36 1.65 -155.65 -0.26 1.10 16 10 C -0.03 -0.70 6.05 37.16 0.22 -0.48 16 11 S -0.21 -4.25 20.53 -107.50 -2.21 -6.46 16 12 C -0.08 -1.30 5.61 37.16 0.21 -1.09 16 13 C -0.10 -1.30 5.67 -91.19 -0.52 -1.81 16 14 H 0.12 1.58 8.06 -51.93 -0.42 1.17 16 15 C -0.15 -1.79 10.00 -27.29 -0.27 -2.06 16 16 C -0.17 -1.92 2.30 -155.11 -0.36 -2.27 16 17 C -0.12 -1.22 6.17 -25.35 -0.16 -1.37 16 18 C 0.06 0.56 7.81 38.02 0.30 0.86 16 19 O -0.39 -4.75 11.37 -35.23 -0.40 -5.15 16 20 C 0.09 0.99 7.65 37.48 0.29 1.28 16 21 C -0.21 -4.48 9.88 -26.73 -0.26 -4.75 16 22 C -0.15 -3.50 9.46 -26.73 -0.25 -3.75 16 23 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 24 H 0.08 1.81 8.14 -51.92 -0.42 1.38 16 25 H 0.04 0.89 7.95 -51.93 -0.41 0.48 16 26 H 0.07 1.14 7.88 -51.92 -0.41 0.73 16 27 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 28 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.10 1.20 8.04 -51.92 -0.42 0.78 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.06 1.27 8.08 -51.93 -0.42 0.85 16 37 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 38 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 334.73 15.07 5.04 5.04 Total: -1.00 -28.20 334.73 -9.98 -38.18 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -6.70 Total: 1.47 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: -1.42 Total: -25.50 kcal Atomic # 7 Polarization: -24.44 SS G_CDS: 0.72 Total: -23.72 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.40 Total: -5.15 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -4.25 SS G_CDS: -2.21 Total: -6.46 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.20 -9.98 -38.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902543899.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.988 kcal (2) G-P(sol) polarization free energy of solvation -28.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds