Wall clock time and date at job start Mon Mar 30 2020 07:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00291 * 2 1 4 4 H 1.48500 * 109.46984 * 240.00383 * 3 2 1 5 5 H 1.48502 * 109.47015 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47301 * 120.00068 * 3 2 1 7 7 C 1.37878 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99764 * 173.91940 * 7 2 1 9 9 C 1.50697 * 119.99934 * 353.91524 * 7 2 1 10 10 C 1.53001 * 115.55187 * 84.89122 * 9 7 2 11 11 S 1.81397 * 109.46885 * 39.93032 * 10 9 7 12 12 C 1.81403 * 102.99838 * 179.97438 * 11 10 9 13 13 C 1.53005 * 109.47278 * 179.97438 * 12 11 10 14 14 H 1.08996 * 115.60244 * 29.10904 * 13 12 11 15 15 C 1.53294 * 117.53955 * 243.21432 * 13 12 11 16 16 C 1.51568 * 117.53537 * 174.99959 * 13 12 11 17 17 C 1.53987 * 122.50282 * 355.49835 * 16 13 12 18 18 C 1.54640 * 102.01336 * 184.25538 * 17 16 13 19 19 O 1.43339 * 107.69225 * 20.09756 * 18 17 16 20 20 C 1.43935 * 110.11961 * 1.51444 * 19 18 17 21 21 C 1.53006 * 117.51971 * 230.59302 * 9 7 2 22 22 C 1.52995 * 60.00356 * 107.48132 * 21 9 7 23 23 H 0.97004 * 119.99388 * 354.96228 * 1 2 3 24 24 H 1.09008 * 109.46679 * 279.93201 * 10 9 7 25 25 H 1.08997 * 109.47553 * 159.93514 * 10 9 7 26 26 H 1.09007 * 109.47158 * 60.00368 * 12 11 10 27 27 H 1.08997 * 109.47582 * 300.00397 * 12 11 10 28 28 H 1.08997 * 117.54128 * 145.23513 * 15 13 12 29 29 H 1.09011 * 117.59232 * 359.97109 * 15 13 12 30 30 H 1.09003 * 110.92130 * 66.08091 * 17 16 13 31 31 H 1.08997 * 110.91786 * 302.43872 * 17 16 13 32 32 H 1.08995 * 109.81352 * 260.55133 * 18 17 16 33 33 H 1.08997 * 109.86667 * 139.67237 * 18 17 16 34 34 H 1.08991 * 110.34756 * 96.04592 * 20 19 18 35 35 H 1.09005 * 110.34328 * 218.31183 * 20 19 18 36 36 H 1.08998 * 117.49990 * 214.97742 * 21 9 7 37 37 H 1.09004 * 117.49333 * 359.97438 * 21 9 7 38 38 H 1.09003 * 117.49969 * 252.51701 * 22 21 9 39 39 H 1.09003 * 117.50019 * 107.48857 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0800 -1.1967 -0.0996 9 6 1.2573 -2.4955 0.1372 10 6 0.6978 -3.0760 -1.1631 11 16 1.9033 -2.8414 -2.4980 12 6 1.0739 -3.5815 -3.9316 13 6 1.9765 -3.4616 -5.1611 14 1 3.0477 -3.4521 -4.9599 15 6 1.4682 -2.6152 -6.3338 16 6 1.5098 -4.1268 -6.4406 17 6 0.2338 -4.9862 -6.5085 18 6 0.2727 -5.5056 -7.9645 19 8 1.6220 -5.3867 -8.4335 20 6 2.4651 -4.8664 -7.3894 21 6 1.7469 -3.4829 1.1986 22 6 0.4437 -2.7112 1.4149 23 1 -0.4849 0.8369 0.0738 24 1 -0.2312 -2.5660 -1.4185 25 1 0.5035 -4.1405 -1.0318 26 1 0.1354 -3.0592 -4.1180 27 1 0.8706 -4.6333 -3.7308 28 1 2.2051 -2.0493 -6.9036 29 1 0.4907 -2.1440 -6.2300 30 1 -0.6544 -4.3785 -6.3357 31 1 0.2828 -5.8122 -5.7990 32 1 -0.3896 -4.9057 -8.5886 33 1 -0.0378 -6.5500 -7.9936 34 1 2.9650 -5.6806 -6.8649 35 1 3.1985 -4.1746 -7.8039 36 1 1.6705 -4.5460 0.9704 37 1 2.6100 -3.1913 1.7971 38 1 0.4491 -1.9119 2.1560 39 1 -0.4903 -3.2667 1.3291 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902543899.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:45 Heat of formation + Delta-G solvation = -18.432790 kcal Electronic energy + Delta-G solvation = -17994.055791 eV Core-core repulsion = 15221.587014 eV Total energy + Delta-G solvation = -2772.468776 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.124 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.95652 -38.40226 -37.54081 -33.95722 -31.48446 -30.30580 -29.36850 -27.86789 -27.24966 -23.42274 -22.92020 -22.37612 -21.09708 -20.22404 -18.14070 -17.24815 -17.16959 -16.76646 -16.55257 -16.12129 -15.59469 -15.48485 -15.02373 -14.96165 -14.43358 -14.08886 -13.81072 -13.57360 -13.48252 -12.99319 -12.81070 -12.77286 -12.58966 -12.46655 -12.35405 -11.99665 -11.94456 -11.52256 -11.09163 -10.99415 -10.67717 -10.53894 -10.45387 -10.37924 -9.84488 -8.27897 -8.06795 -6.15070 0.97089 1.43421 1.44909 1.51004 2.07449 2.47038 2.57677 2.97666 3.23331 3.26349 3.48877 3.65169 3.79616 3.90731 4.20635 4.22463 4.30986 4.34529 4.41566 4.48076 4.54744 4.65293 4.68849 4.69833 4.75455 4.77062 4.85496 4.86831 4.96457 5.01457 5.06526 5.08617 5.18203 5.22937 5.56862 5.63068 5.80566 5.98441 6.40561 6.86162 7.51579 9.00969 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.025753 B = 0.004316 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.993681 B = 6486.467729 C = 7066.905592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.037 3.963 3 Si 0.937 3.063 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.488 4.488 8 H 0.046 0.954 9 C 0.025 3.975 10 C -0.020 4.020 11 S -0.255 6.255 12 C -0.059 4.059 13 C -0.112 4.112 14 H 0.110 0.890 15 C -0.150 4.150 16 C -0.151 4.151 17 C -0.120 4.120 18 C 0.053 3.947 19 O -0.405 6.405 20 C 0.088 3.912 21 C -0.185 4.185 22 C -0.155 4.155 23 H 0.258 0.742 24 H 0.052 0.948 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.109 0.891 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.005 -9.837 -12.576 15.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.164 4.164 3 Si 0.763 3.237 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.527 4.527 8 H 0.064 0.936 9 C 0.024 3.976 10 C -0.169 4.169 11 S -0.026 6.026 12 C -0.207 4.207 13 C -0.131 4.131 14 H 0.128 0.872 15 C -0.187 4.187 16 C -0.154 4.154 17 C -0.157 4.157 18 C -0.023 4.023 19 O -0.325 6.325 20 C 0.012 3.988 21 C -0.222 4.222 22 C -0.194 4.194 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.102 0.898 28 H 0.127 0.873 29 H 0.117 0.883 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.885 -9.301 -12.816 15.860 hybrid contribution -1.091 0.672 0.583 1.408 sum -0.206 -8.629 -12.233 14.972 Atomic orbital electron populations 1.70086 1.06815 1.27200 1.50095 1.25447 0.95352 1.01235 0.94323 0.85943 0.78768 0.80309 0.78663 1.19986 1.21070 1.19930 1.20406 0.92261 0.89998 1.50012 0.93557 1.18610 0.99023 0.94233 0.85722 1.22774 0.97767 1.00061 0.96277 1.87155 1.30493 1.79785 1.05177 1.22860 1.00243 1.02736 0.94910 1.21551 0.99416 1.05031 0.87140 0.87159 1.23085 1.03446 0.91847 1.00305 1.22237 0.98543 0.95489 0.99083 1.22519 0.96530 0.99315 0.97326 1.23230 0.83533 1.01612 0.93927 1.88415 1.19914 1.86149 1.37979 1.22744 0.92137 0.96742 0.87160 1.23071 0.97419 0.96516 1.05199 1.22479 0.93580 1.01252 1.02093 0.93307 0.92967 0.91509 0.91077 0.89750 0.87292 0.88300 0.89426 0.89513 0.90572 0.90089 0.90813 0.88963 0.88937 0.90459 0.92040 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.87 12.93 21.45 0.28 -50.59 16 2 C 0.04 2.01 5.39 84.65 0.46 2.47 16 3 Si 0.94 43.74 29.54 68.60 2.03 45.76 16 4 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.49 -26.35 7.55 25.60 0.19 -26.16 16 8 H 0.05 2.58 7.82 -2.91 -0.02 2.56 16 9 C 0.03 1.22 1.65 -52.92 -0.09 1.13 16 10 C -0.02 -0.88 6.05 71.98 0.44 -0.44 16 11 S -0.25 -10.32 20.53 -56.49 -1.16 -11.48 16 12 C -0.06 -1.76 5.61 71.98 0.40 -1.35 16 13 C -0.11 -2.83 5.67 -11.16 -0.06 -2.89 16 14 H 0.11 2.92 8.06 -2.39 -0.02 2.90 16 15 C -0.15 -3.36 10.00 30.23 0.30 -3.06 16 16 C -0.15 -3.14 2.30 -52.57 -0.12 -3.26 16 17 C -0.12 -2.14 6.17 31.49 0.19 -1.95 16 18 C 0.05 0.92 7.81 72.54 0.57 1.49 16 19 O -0.40 -9.05 11.37 -148.98 -1.69 -10.75 16 20 C 0.09 1.75 7.65 72.19 0.55 2.30 16 21 C -0.18 -7.72 9.88 30.59 0.30 -7.42 16 22 C -0.15 -7.03 9.46 30.60 0.29 -6.75 16 23 H 0.26 14.02 8.32 -92.71 -0.77 13.25 16 24 H 0.05 2.47 8.14 -2.39 -0.02 2.46 16 25 H 0.07 2.54 7.95 -2.39 -0.02 2.52 16 26 H 0.07 2.14 7.88 -2.39 -0.02 2.12 16 27 H 0.08 2.26 8.13 -2.39 -0.02 2.24 16 28 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.10 2.23 8.04 -2.38 -0.02 2.21 16 30 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.09 3.34 8.08 -2.39 -0.02 3.32 16 37 H 0.08 3.23 8.14 -2.38 -0.02 3.21 16 38 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 39 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -59.58 334.73 3.87 -55.71 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 1.00 Total: 17.23 kcal Atomic # 6 Polarization: -49.31 SS G_CDS: 3.43 Total: -45.88 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 0.28 Total: -50.59 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -1.69 Total: -10.75 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -10.32 SS G_CDS: -1.16 Total: -11.48 kcal Total: -59.58 3.87 -55.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902543899.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.277 kcal (2) G-P(sol) polarization free energy of solvation -59.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds