Wall clock time and date at job start Mon Mar 30 2020 07:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99983 * 2 1 4 4 H 1.48506 * 109.47133 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47409 * 300.00722 * 3 2 1 6 6 H 1.48497 * 109.46872 * 60.00534 * 3 2 1 7 7 C 1.37882 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00081 * 173.91437 * 7 2 1 9 9 C 1.50695 * 119.99619 * 353.91411 * 7 2 1 10 10 C 1.53006 * 115.55175 * 84.88910 * 9 7 2 11 11 S 1.81397 * 109.46785 * 39.93464 * 10 9 7 12 12 C 1.81406 * 102.99658 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.46950 * 179.97438 * 12 11 10 14 14 H 1.09002 * 115.59638 * 330.81998 * 13 12 11 15 15 C 1.53186 * 117.52150 * 116.64170 * 13 12 11 16 16 C 1.52107 * 59.77033 * 107.42311 * 15 13 12 17 17 C 1.53710 * 121.73284 * 248.89872 * 16 15 13 18 18 C 1.54696 * 103.69298 * 216.53279 * 17 16 15 19 19 O 1.44502 * 104.86909 * 336.15436 * 18 17 16 20 20 C 1.44633 * 105.46193 * 39.97909 * 19 18 17 21 21 C 1.53002 * 117.51788 * 230.58735 * 9 7 2 22 22 C 1.53006 * 60.00158 * 107.48269 * 21 9 7 23 23 H 0.96999 * 119.99677 * 354.96647 * 1 2 3 24 24 H 1.08989 * 109.46790 * 279.93025 * 10 9 7 25 25 H 1.09003 * 109.46703 * 159.93241 * 10 9 7 26 26 H 1.09003 * 109.46899 * 59.99793 * 12 11 10 27 27 H 1.09001 * 109.47239 * 299.99770 * 12 11 10 28 28 H 1.08994 * 117.52095 * 359.97438 * 15 13 12 29 29 H 1.08999 * 117.56334 * 214.82250 * 15 13 12 30 30 H 1.08997 * 110.58401 * 335.08843 * 17 16 15 31 31 H 1.09000 * 110.57736 * 97.98702 * 17 16 15 32 32 H 1.09003 * 110.36035 * 95.00266 * 18 17 16 33 33 H 1.09007 * 110.36433 * 217.30759 * 18 17 16 34 34 H 1.08998 * 110.42106 * 201.57737 * 20 19 18 35 35 H 1.09002 * 110.41655 * 79.11646 * 20 19 18 36 36 H 1.08995 * 117.50416 * 214.97093 * 21 9 7 37 37 H 1.09008 * 117.49670 * 359.97438 * 21 9 7 38 38 H 1.08998 * 117.50079 * 252.51576 * 22 21 9 39 39 H 1.09001 * 117.49691 * 107.48594 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3966 -1.2123 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0800 -1.1966 -0.0997 9 6 1.2575 -2.4955 0.1373 10 6 0.6978 -3.0761 -1.1631 11 16 1.9034 -2.8414 -2.4980 12 6 1.0732 -3.5802 -3.9319 13 6 1.9758 -3.4602 -5.1614 14 1 2.6513 -2.6048 -5.1680 15 6 2.4719 -4.7589 -5.8047 16 6 1.4094 -3.9188 -6.4967 17 6 -0.0424 -4.4047 -6.6345 18 6 -0.4714 -3.8862 -8.0274 19 8 0.3983 -2.7622 -8.2887 20 6 1.7005 -3.1608 -7.8014 21 6 1.7472 -3.4828 1.1985 22 6 0.4438 -2.7112 1.4150 23 1 -0.4849 0.8368 0.0737 24 1 -0.2310 -2.5662 -1.4184 25 1 0.5037 -4.1406 -1.0317 26 1 0.1351 -3.0572 -4.1178 27 1 0.8693 -4.6320 -3.7316 28 1 2.1555 -5.6983 -5.3515 29 1 3.4735 -4.7582 -6.2348 30 1 -0.0870 -5.4932 -6.6004 31 1 -0.6676 -3.9699 -5.8546 32 1 -0.3274 -4.6603 -8.7811 33 1 -1.5125 -3.5636 -8.0079 34 1 2.3168 -2.2841 -7.6025 35 1 2.1913 -3.8164 -8.5207 36 1 1.6707 -4.5459 0.9704 37 1 2.6104 -3.1913 1.7970 38 1 0.4493 -1.9119 2.1560 39 1 -0.4901 -3.2667 1.3291 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902543900.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:49 Heat of formation + Delta-G solvation = -4.939746 kcal Electronic energy + Delta-G solvation = -18049.705879 eV Core-core repulsion = 15277.822205 eV Total energy + Delta-G solvation = -2771.883674 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.124 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.98522 -36.60291 -36.50550 -31.90281 -30.51714 -29.17842 -27.63779 -26.54408 -25.25086 -22.88752 -21.32502 -21.11924 -19.38031 -18.94041 -16.37622 -16.20410 -16.10278 -15.39925 -15.09600 -14.56683 -14.27408 -13.91827 -13.68969 -13.55170 -13.14407 -12.74225 -12.56401 -12.22959 -11.85986 -11.64979 -11.49683 -11.25104 -11.01626 -10.94961 -10.82469 -10.46279 -10.18208 -10.12489 -9.93257 -9.71905 -9.55404 -9.05389 -8.74345 -8.41007 -8.00572 -6.61529 -6.00952 -4.04733 2.48502 3.33136 3.41967 3.46276 3.58044 3.67058 3.91221 4.27638 4.46488 4.65017 4.73140 4.77743 4.98871 5.28243 5.28422 5.33314 5.38783 5.45429 5.49603 5.56602 5.62890 5.72078 5.75218 5.79100 5.92307 5.99416 6.00402 6.18807 6.29991 6.43340 6.50765 6.64508 6.72392 6.83792 7.05460 7.37100 7.48020 7.92042 8.41051 8.95244 9.60537 11.08414 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.021723 B = 0.004641 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.656800 B = 6031.712565 C = 6623.815355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.077 3.923 3 Si 0.887 3.113 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.480 4.480 8 H 0.063 0.937 9 C 0.055 3.945 10 C -0.032 4.032 11 S -0.208 6.208 12 C -0.084 4.084 13 C -0.100 4.100 14 H 0.115 0.885 15 C -0.155 4.155 16 C -0.162 4.162 17 C -0.121 4.121 18 C 0.048 3.952 19 O -0.374 6.374 20 C 0.083 3.917 21 C -0.207 4.207 22 C -0.152 4.152 23 H 0.258 0.742 24 H 0.076 0.924 25 H 0.044 0.956 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.400 -9.785 -12.397 15.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.126 4.126 3 Si 0.715 3.285 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.212 1.212 7 C -0.519 4.519 8 H 0.081 0.919 9 C 0.054 3.946 10 C -0.180 4.180 11 S 0.021 5.979 12 C -0.232 4.232 13 C -0.119 4.119 14 H 0.133 0.867 15 C -0.192 4.192 16 C -0.164 4.164 17 C -0.159 4.159 18 C -0.029 4.029 19 O -0.293 6.293 20 C 0.006 3.994 21 C -0.244 4.244 22 C -0.192 4.192 23 H 0.068 0.932 24 H 0.095 0.905 25 H 0.063 0.937 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.167 -8.988 -12.550 15.480 hybrid contribution -0.937 0.081 0.190 0.959 sum 0.231 -8.907 -12.359 15.236 Atomic orbital electron populations 1.70016 1.05926 1.26654 1.48938 1.24891 0.94695 0.98795 0.94244 0.86609 0.80471 0.83968 0.77483 1.19602 1.20929 1.21156 1.20342 0.92871 0.88372 1.50314 0.91900 1.18482 0.97837 0.94025 0.84271 1.22991 0.98894 0.99349 0.96801 1.87110 1.29594 1.78233 1.02974 1.22933 1.00951 1.02564 0.96715 1.21906 1.00803 0.98766 0.90425 0.86668 1.23022 0.97898 0.95431 1.02799 1.22319 0.95193 1.04099 0.94829 1.22383 0.94206 1.01098 0.98184 1.23413 0.95417 0.88980 0.95108 1.89170 1.19838 1.37734 1.82513 1.22793 0.86076 0.98735 0.91783 1.23064 0.98480 0.95551 1.07354 1.22563 0.92192 1.01253 1.03172 0.93176 0.90545 0.93720 0.90619 0.91474 0.88446 0.88382 0.90394 0.90072 0.92399 0.89124 0.88885 0.91884 0.91697 0.90254 0.89832 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.74 12.93 55.43 0.72 -24.02 16 2 C 0.08 2.11 5.39 -17.82 -0.10 2.01 16 3 Si 0.89 21.42 29.55 -169.99 -5.02 16.40 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.48 -12.98 7.55 -34.44 -0.26 -13.24 16 8 H 0.06 1.75 7.82 -52.49 -0.41 1.34 16 9 C 0.06 1.35 1.65 -155.65 -0.26 1.10 16 10 C -0.03 -0.71 6.05 37.16 0.22 -0.49 16 11 S -0.21 -4.34 20.53 -107.50 -2.21 -6.55 16 12 C -0.08 -1.34 5.40 37.15 0.20 -1.14 16 13 C -0.10 -1.39 5.63 -90.98 -0.51 -1.90 16 14 H 0.12 1.71 8.06 -51.93 -0.42 1.29 16 15 C -0.15 -1.71 9.96 -27.09 -0.27 -1.98 16 16 C -0.16 -1.89 2.50 -154.69 -0.39 -2.28 16 17 C -0.12 -1.29 6.49 -25.47 -0.17 -1.45 16 18 C 0.05 0.49 7.65 38.05 0.29 0.78 16 19 O -0.37 -4.92 11.65 -35.23 -0.41 -5.33 16 20 C 0.08 0.93 7.44 37.51 0.28 1.21 16 21 C -0.21 -4.51 9.88 -26.73 -0.26 -4.77 16 22 C -0.15 -3.53 9.47 -26.72 -0.25 -3.78 16 23 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 24 H 0.08 1.84 8.14 -51.93 -0.42 1.41 16 25 H 0.04 0.90 7.95 -51.92 -0.41 0.49 16 26 H 0.08 1.26 7.40 -51.92 -0.38 0.87 16 27 H 0.07 0.99 7.88 -51.92 -0.41 0.58 16 28 H 0.10 1.02 8.04 -51.93 -0.42 0.61 16 29 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.94 6.90 -51.93 -0.36 0.58 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.83 8.14 -51.92 -0.42 0.40 16 34 H 0.09 1.02 8.12 -51.93 -0.42 0.60 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 1.27 8.08 -51.93 -0.42 0.85 16 37 H 0.08 1.71 8.14 -51.92 -0.42 1.29 16 38 H 0.08 2.06 8.14 -51.93 -0.42 1.63 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 332.88 15.07 5.02 5.02 Total: -1.00 -28.87 332.88 -9.97 -38.84 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -6.59 Total: 1.58 kcal Atomic # 6 Polarization: -24.47 SS G_CDS: -1.47 Total: -25.94 kcal Atomic # 7 Polarization: -24.74 SS G_CDS: 0.72 Total: -24.02 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: -0.41 Total: -5.33 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -4.34 SS G_CDS: -2.21 Total: -6.55 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.87 -9.97 -38.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902543900.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.898 kcal (2) G-P(sol) polarization free energy of solvation -28.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds