Wall clock time and date at job start Mon Mar 30 2020 07:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99983 * 2 1 4 4 H 1.48506 * 109.47133 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47409 * 300.00722 * 3 2 1 6 6 H 1.48497 * 109.46872 * 60.00534 * 3 2 1 7 7 C 1.37882 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00081 * 173.91437 * 7 2 1 9 9 C 1.50695 * 119.99619 * 353.91411 * 7 2 1 10 10 C 1.53006 * 115.55175 * 84.88910 * 9 7 2 11 11 S 1.81397 * 109.46785 * 39.93464 * 10 9 7 12 12 C 1.81406 * 102.99658 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.46950 * 179.97438 * 12 11 10 14 14 H 1.09002 * 115.59638 * 330.81998 * 13 12 11 15 15 C 1.53186 * 117.52150 * 116.64170 * 13 12 11 16 16 C 1.52107 * 59.77033 * 107.42311 * 15 13 12 17 17 C 1.53710 * 121.73284 * 248.89872 * 16 15 13 18 18 C 1.54696 * 103.69298 * 216.53279 * 17 16 15 19 19 O 1.44502 * 104.86909 * 336.15436 * 18 17 16 20 20 C 1.44633 * 105.46193 * 39.97909 * 19 18 17 21 21 C 1.53002 * 117.51788 * 230.58735 * 9 7 2 22 22 C 1.53006 * 60.00158 * 107.48269 * 21 9 7 23 23 H 0.96999 * 119.99677 * 354.96647 * 1 2 3 24 24 H 1.08989 * 109.46790 * 279.93025 * 10 9 7 25 25 H 1.09003 * 109.46703 * 159.93241 * 10 9 7 26 26 H 1.09003 * 109.46899 * 59.99793 * 12 11 10 27 27 H 1.09001 * 109.47239 * 299.99770 * 12 11 10 28 28 H 1.08994 * 117.52095 * 359.97438 * 15 13 12 29 29 H 1.08999 * 117.56334 * 214.82250 * 15 13 12 30 30 H 1.08997 * 110.58401 * 335.08843 * 17 16 15 31 31 H 1.09000 * 110.57736 * 97.98702 * 17 16 15 32 32 H 1.09003 * 110.36035 * 95.00266 * 18 17 16 33 33 H 1.09007 * 110.36433 * 217.30759 * 18 17 16 34 34 H 1.08998 * 110.42106 * 201.57737 * 20 19 18 35 35 H 1.09002 * 110.41655 * 79.11646 * 20 19 18 36 36 H 1.08995 * 117.50416 * 214.97093 * 21 9 7 37 37 H 1.09008 * 117.49670 * 359.97438 * 21 9 7 38 38 H 1.08998 * 117.50079 * 252.51576 * 22 21 9 39 39 H 1.09001 * 117.49691 * 107.48594 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3966 -1.2123 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0800 -1.1966 -0.0997 9 6 1.2575 -2.4955 0.1373 10 6 0.6978 -3.0761 -1.1631 11 16 1.9034 -2.8414 -2.4980 12 6 1.0732 -3.5802 -3.9319 13 6 1.9758 -3.4602 -5.1614 14 1 2.6513 -2.6048 -5.1680 15 6 2.4719 -4.7589 -5.8047 16 6 1.4094 -3.9188 -6.4967 17 6 -0.0424 -4.4047 -6.6345 18 6 -0.4714 -3.8862 -8.0274 19 8 0.3983 -2.7622 -8.2887 20 6 1.7005 -3.1608 -7.8014 21 6 1.7472 -3.4828 1.1985 22 6 0.4438 -2.7112 1.4150 23 1 -0.4849 0.8368 0.0737 24 1 -0.2310 -2.5662 -1.4184 25 1 0.5037 -4.1406 -1.0317 26 1 0.1351 -3.0572 -4.1178 27 1 0.8693 -4.6320 -3.7316 28 1 2.1555 -5.6983 -5.3515 29 1 3.4735 -4.7582 -6.2348 30 1 -0.0870 -5.4932 -6.6004 31 1 -0.6676 -3.9699 -5.8546 32 1 -0.3274 -4.6603 -8.7811 33 1 -1.5125 -3.5636 -8.0079 34 1 2.3168 -2.2841 -7.6025 35 1 2.1913 -3.8164 -8.5207 36 1 1.6707 -4.5459 0.9704 37 1 2.6104 -3.1913 1.7970 38 1 0.4493 -1.9119 2.1560 39 1 -0.4901 -3.2667 1.3291 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902543900.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:49 Heat of formation + Delta-G solvation = -19.179018 kcal Electronic energy + Delta-G solvation = -18050.323340 eV Core-core repulsion = 15277.822205 eV Total energy + Delta-G solvation = -2772.501135 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.124 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.88713 -38.41012 -37.51359 -33.97133 -31.38670 -30.32281 -29.36867 -27.61338 -27.21074 -23.70272 -22.92416 -22.35811 -21.09080 -20.07072 -18.16621 -17.21016 -17.13654 -16.71333 -16.51040 -16.17100 -15.61784 -15.46631 -15.14641 -14.77285 -14.60182 -14.16150 -13.79594 -13.53167 -13.26237 -13.01362 -12.83595 -12.80533 -12.57246 -12.40331 -12.31989 -12.00511 -11.86232 -11.52687 -11.09383 -10.96254 -10.78726 -10.61629 -10.47429 -10.35084 -9.85179 -8.29359 -8.08487 -6.16530 0.96819 1.38895 1.43103 1.52526 2.06659 2.45490 2.66551 3.04535 3.22027 3.35463 3.48240 3.72558 3.77918 3.94329 4.21073 4.22567 4.29398 4.32407 4.40248 4.52127 4.60588 4.64332 4.67508 4.68301 4.76108 4.78049 4.83363 4.89684 4.95774 5.00965 5.02891 5.13142 5.21290 5.22380 5.56215 5.62636 5.79694 5.82455 6.39403 6.85461 7.50247 8.99820 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.021723 B = 0.004641 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.656800 B = 6031.712565 C = 6623.815355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.035 3.965 3 Si 0.938 3.062 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.279 1.279 7 C -0.485 4.485 8 H 0.047 0.953 9 C 0.023 3.977 10 C -0.020 4.020 11 S -0.256 6.256 12 C -0.057 4.057 13 C -0.132 4.132 14 H 0.098 0.902 15 C -0.131 4.131 16 C -0.153 4.153 17 C -0.122 4.122 18 C 0.044 3.956 19 O -0.403 6.403 20 C 0.079 3.921 21 C -0.183 4.183 22 C -0.154 4.154 23 H 0.258 0.742 24 H 0.049 0.951 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.085 0.915 28 H 0.109 0.891 29 H 0.115 0.885 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.809 -11.660 -13.643 17.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.166 4.166 3 Si 0.764 3.236 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.205 1.205 7 C -0.524 4.524 8 H 0.065 0.935 9 C 0.022 3.978 10 C -0.168 4.168 11 S -0.027 6.027 12 C -0.206 4.206 13 C -0.151 4.151 14 H 0.117 0.883 15 C -0.168 4.168 16 C -0.155 4.155 17 C -0.160 4.160 18 C -0.032 4.032 19 O -0.323 6.323 20 C 0.003 3.997 21 C -0.220 4.220 22 C -0.194 4.194 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.103 0.897 28 H 0.128 0.872 29 H 0.133 0.867 30 H 0.118 0.882 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.585 -10.862 -13.776 17.614 hybrid contribution -1.055 0.619 0.505 1.323 sum 0.530 -10.243 -13.271 16.773 Atomic orbital electron populations 1.70097 1.06858 1.27079 1.50321 1.25471 0.95360 1.01328 0.94400 0.85815 0.79446 0.80928 0.77393 1.19426 1.21166 1.20493 1.20468 0.92264 0.89964 1.49660 0.93520 1.18630 0.99146 0.94327 0.85744 1.22768 0.97681 1.00066 0.96305 1.87134 1.30471 1.79807 1.05274 1.22839 1.00175 1.02663 0.94876 1.21802 1.01890 1.00492 0.90890 0.88343 1.23132 0.98615 0.94217 1.00823 1.22377 0.96161 1.03554 0.93455 1.22437 0.93117 1.02393 0.98032 1.23597 0.95360 0.88821 0.95413 1.89141 1.20923 1.39416 1.82803 1.22923 0.85652 0.99029 0.92101 1.23068 0.97380 0.96503 1.05036 1.22478 0.93613 1.01273 1.02021 0.93324 0.93221 0.91424 0.91748 0.89661 0.87226 0.86686 0.88162 0.91515 0.90146 0.88546 0.89436 0.89458 0.88868 0.90371 0.92020 0.90543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.96 12.93 21.45 0.28 -51.68 16 2 C 0.03 1.93 5.39 84.66 0.46 2.38 16 3 Si 0.94 44.62 29.55 68.60 2.03 46.64 16 4 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 6 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 7 C -0.48 -26.58 7.55 25.60 0.19 -26.39 16 8 H 0.05 2.65 7.82 -2.91 -0.02 2.63 16 9 C 0.02 1.11 1.65 -52.92 -0.09 1.02 16 10 C -0.02 -0.87 6.05 71.98 0.44 -0.44 16 11 S -0.26 -10.68 20.53 -56.49 -1.16 -11.84 16 12 C -0.06 -1.80 5.40 71.98 0.39 -1.41 16 13 C -0.13 -3.49 5.63 -11.02 -0.06 -3.55 16 14 H 0.10 2.94 8.06 -2.39 -0.02 2.92 16 15 C -0.13 -2.49 9.96 30.36 0.30 -2.19 16 16 C -0.15 -3.22 2.50 -52.30 -0.13 -3.35 16 17 C -0.12 -2.30 6.49 31.41 0.20 -2.10 16 18 C 0.04 0.80 7.65 72.56 0.56 1.36 16 19 O -0.40 -10.02 11.65 -148.98 -1.74 -11.76 16 20 C 0.08 1.63 7.44 72.21 0.54 2.17 16 21 C -0.18 -7.69 9.88 30.60 0.30 -7.39 16 22 C -0.15 -7.11 9.47 30.60 0.29 -6.82 16 23 H 0.26 14.21 8.32 -92.71 -0.77 13.44 16 24 H 0.05 2.43 8.14 -2.40 -0.02 2.41 16 25 H 0.07 2.63 7.95 -2.39 -0.02 2.61 16 26 H 0.06 2.14 7.40 -2.39 -0.02 2.12 16 27 H 0.08 2.34 7.88 -2.39 -0.02 2.32 16 28 H 0.11 1.86 8.04 -2.39 -0.02 1.84 16 29 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.07 1.45 6.90 -2.39 -0.02 1.44 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.09 1.85 8.12 -2.39 -0.02 1.83 16 35 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.09 3.38 8.08 -2.39 -0.02 3.36 16 37 H 0.08 3.28 8.14 -2.38 -0.02 3.26 16 38 H 0.06 3.07 8.14 -2.39 -0.02 3.05 16 39 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -62.45 332.88 3.80 -58.65 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 1.00 Total: 16.69 kcal Atomic # 6 Polarization: -50.08 SS G_CDS: 3.38 Total: -46.70 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: 0.28 Total: -51.68 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -1.74 Total: -11.76 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 16 Polarization: -10.68 SS G_CDS: -1.16 Total: -11.84 kcal Total: -62.45 3.80 -58.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902543900.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.471 kcal (2) G-P(sol) polarization free energy of solvation -62.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds