Wall clock time and date at job start Mon Mar 30 2020 07:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86795 * 119.99927 * 2 1 4 4 H 1.48499 * 109.46848 * 269.99784 * 3 2 1 5 5 H 1.48496 * 109.47388 * 29.99589 * 3 2 1 6 6 H 1.48505 * 109.47168 * 150.00130 * 3 2 1 7 7 C 1.37875 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99817 * 173.91226 * 7 2 1 9 9 C 1.50702 * 120.00104 * 353.91786 * 7 2 1 10 10 C 1.52997 * 115.55368 * 84.88885 * 9 7 2 11 11 S 1.81398 * 109.47060 * 39.92880 * 10 9 7 12 12 C 1.81403 * 102.99846 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47030 * 180.02562 * 12 11 10 14 14 H 1.08998 * 115.56854 * 29.41245 * 13 12 11 15 15 C 1.53184 * 117.51848 * 243.64126 * 13 12 11 16 16 C 1.52131 * 59.77828 * 252.52211 * 15 13 12 17 17 C 1.54036 * 121.47800 * 249.14791 * 16 15 13 18 18 C 1.55190 * 101.82830 * 195.69697 * 17 16 15 19 19 O 1.44453 * 103.63306 * 36.32393 * 18 17 16 20 20 C 1.43990 * 107.04894 * 320.43700 * 19 18 17 21 21 C 1.53004 * 117.51271 * 230.58715 * 9 7 2 22 22 C 1.52998 * 60.00005 * 107.48166 * 21 9 7 23 23 H 0.96997 * 119.99605 * 355.01804 * 1 2 3 24 24 H 1.08999 * 109.46910 * 279.93525 * 10 9 7 25 25 H 1.08999 * 109.47312 * 159.93082 * 10 9 7 26 26 H 1.08999 * 109.47263 * 60.00227 * 12 11 10 27 27 H 1.09004 * 109.47157 * 300.00191 * 12 11 10 28 28 H 1.08994 * 117.52502 * 359.95069 * 15 13 12 29 29 H 1.09004 * 117.52266 * 145.10232 * 15 13 12 30 30 H 1.09007 * 110.95353 * 313.82438 * 17 16 15 31 31 H 1.08992 * 110.95921 * 77.55548 * 17 16 15 32 32 H 1.08995 * 110.58592 * 277.78768 * 18 17 16 33 33 H 1.08993 * 110.71575 * 154.92658 * 18 17 16 34 34 H 1.09001 * 109.97152 * 266.93468 * 20 19 18 35 35 H 1.09002 * 110.00661 * 145.68397 * 20 19 18 36 36 H 1.09004 * 117.49419 * 214.96725 * 21 9 7 37 37 H 1.08991 * 117.50119 * 359.97438 * 21 9 7 38 38 H 1.09000 * 117.49613 * 252.51457 * 22 21 9 39 39 H 1.09001 * 117.50680 * 107.48462 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0800 -1.1968 -0.0987 9 6 1.2574 -2.4954 0.1394 10 6 0.6978 -3.0771 -1.1604 11 16 1.9033 -2.8436 -2.4956 12 6 1.0732 -3.5835 -3.9288 13 6 1.9763 -3.4657 -5.1582 14 1 3.0474 -3.4627 -4.9565 15 6 1.4736 -2.6117 -6.3264 16 6 1.5049 -4.1282 -6.4442 17 6 2.4908 -4.8414 -7.3887 18 6 1.8793 -6.2654 -7.4704 19 8 0.4549 -6.0262 -7.4462 20 6 0.2211 -4.9645 -6.5021 21 6 1.7472 -3.4818 1.2016 22 6 0.4438 -2.7100 1.4173 23 1 -0.4849 0.8369 0.0730 24 1 -0.2310 -2.5674 -1.4162 25 1 0.5037 -4.1415 -1.0282 26 1 0.1351 -3.0608 -4.1152 27 1 0.8693 -4.6353 -3.7276 28 1 0.4995 -2.1348 -6.2191 29 1 2.2143 -2.0472 -6.8929 30 1 2.5040 -4.3660 -8.3696 31 1 3.4914 -4.8708 -6.9578 32 1 2.1825 -6.8626 -6.6105 33 1 2.1698 -6.7570 -8.3988 34 1 0.0040 -5.3817 -5.5188 35 1 -0.6117 -4.3454 -6.8358 36 1 1.6707 -4.5451 0.9743 37 1 2.6102 -3.1898 1.7998 38 1 0.4493 -1.9101 2.1576 39 1 -0.4901 -3.2655 1.3320 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902543901.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:52 Heat of formation + Delta-G solvation = -5.450925 kcal Electronic energy + Delta-G solvation = -18038.808710 eV Core-core repulsion = 15266.902869 eV Total energy + Delta-G solvation = -2771.905841 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.124 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.01200 -36.60789 -36.50874 -31.91520 -30.83216 -28.60393 -27.66121 -26.95493 -25.26903 -22.78577 -21.28781 -21.12507 -19.43469 -19.02088 -16.45141 -16.21673 -16.08120 -15.30199 -15.10573 -14.61080 -14.31074 -13.79148 -13.59166 -13.53802 -13.22711 -13.02636 -12.54681 -12.24463 -11.91845 -11.59598 -11.55824 -11.31540 -11.01667 -10.93759 -10.85773 -10.47827 -10.20014 -10.08395 -9.90697 -9.73039 -9.54555 -9.08741 -8.76209 -8.41390 -8.01792 -6.63706 -6.02184 -4.06014 2.45531 3.33213 3.39871 3.43433 3.62299 3.65836 3.78999 4.21420 4.45036 4.61161 4.74764 4.77513 5.01275 5.26885 5.27251 5.32800 5.35366 5.48702 5.56080 5.57755 5.60373 5.73739 5.76685 5.78616 5.84073 5.96628 5.99416 6.17749 6.27790 6.42490 6.49877 6.68526 6.71741 6.82630 7.04796 7.36064 7.47168 7.90439 8.39735 8.93479 9.59126 11.07097 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.025330 B = 0.004438 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.140434 B = 6306.983688 C = 6907.333938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.078 3.922 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.481 4.481 8 H 0.062 0.938 9 C 0.056 3.944 10 C -0.032 4.032 11 S -0.207 6.207 12 C -0.087 4.087 13 C -0.101 4.101 14 H 0.114 0.886 15 C -0.151 4.151 16 C -0.165 4.165 17 C -0.118 4.118 18 C 0.049 3.951 19 O -0.380 6.380 20 C 0.083 3.917 21 C -0.207 4.207 22 C -0.152 4.152 23 H 0.259 0.741 24 H 0.076 0.924 25 H 0.045 0.955 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.955 -8.785 -12.064 15.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.126 4.126 3 Si 0.715 3.285 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.520 4.520 8 H 0.080 0.920 9 C 0.054 3.946 10 C -0.181 4.181 11 S 0.022 5.978 12 C -0.235 4.235 13 C -0.120 4.120 14 H 0.132 0.868 15 C -0.188 4.188 16 C -0.167 4.167 17 C -0.156 4.156 18 C -0.028 4.028 19 O -0.299 6.299 20 C 0.007 3.993 21 C -0.245 4.245 22 C -0.192 4.192 23 H 0.069 0.931 24 H 0.095 0.905 25 H 0.063 0.937 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.615 -8.305 -12.228 15.012 hybrid contribution -0.783 0.506 0.208 0.955 sum 1.832 -7.800 -12.020 14.446 Atomic orbital electron populations 1.70011 1.05914 1.26741 1.48868 1.24885 0.94693 0.98767 0.94234 0.86676 0.80003 0.83573 0.78291 1.20418 1.21351 1.19883 1.20295 0.92824 0.88405 1.50438 0.91986 1.18471 0.97854 0.94007 0.84260 1.23001 0.98884 0.99416 0.96774 1.87107 1.29533 1.78341 1.02823 1.22961 1.00847 1.02661 0.97062 1.21910 0.99940 1.02778 0.87375 0.86791 1.23033 1.03278 0.91071 1.01411 1.22328 0.97849 0.95899 1.00602 1.22590 0.98483 0.95290 0.99233 1.23538 0.81072 0.96219 1.01936 1.88896 1.23465 1.54732 1.62810 1.22511 0.95746 0.87902 0.93179 1.23065 0.98492 0.95567 1.07346 1.22561 0.92205 1.01245 1.03145 0.93130 0.90507 0.93662 0.90816 0.91142 0.88237 0.88319 0.90199 0.89994 0.92035 0.89100 0.91756 0.89629 0.91678 0.90256 0.89831 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.49 12.93 55.43 0.72 -23.78 16 2 C 0.08 2.10 5.39 -17.82 -0.10 2.00 16 3 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.48 -12.90 7.55 -34.44 -0.26 -13.16 16 8 H 0.06 1.71 7.82 -52.48 -0.41 1.30 16 9 C 0.06 1.35 1.65 -155.66 -0.26 1.09 16 10 C -0.03 -0.71 6.05 37.16 0.22 -0.49 16 11 S -0.21 -4.26 20.53 -107.50 -2.21 -6.47 16 12 C -0.09 -1.38 5.42 37.16 0.20 -1.17 16 13 C -0.10 -1.37 5.62 -90.96 -0.51 -1.88 16 14 H 0.11 1.59 8.06 -51.93 -0.42 1.17 16 15 C -0.15 -1.81 9.95 -27.08 -0.27 -2.08 16 16 C -0.16 -1.90 2.44 -154.68 -0.38 -2.28 16 17 C -0.12 -1.15 6.94 -25.03 -0.17 -1.32 16 18 C 0.05 0.48 7.73 38.32 0.30 0.78 16 19 O -0.38 -4.80 11.53 -35.23 -0.41 -5.21 16 20 C 0.08 0.99 7.12 37.33 0.27 1.25 16 21 C -0.21 -4.50 9.88 -26.73 -0.26 -4.76 16 22 C -0.15 -3.51 9.46 -26.73 -0.25 -3.76 16 23 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 24 H 0.08 1.83 8.14 -51.92 -0.42 1.40 16 25 H 0.04 0.90 7.95 -51.92 -0.41 0.49 16 26 H 0.07 1.17 7.88 -51.92 -0.41 0.76 16 27 H 0.07 1.05 7.41 -51.92 -0.38 0.66 16 28 H 0.10 1.19 8.04 -51.93 -0.42 0.78 16 29 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 31 H 0.08 0.73 8.13 -51.93 -0.42 0.30 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.77 6.92 -51.93 -0.36 0.41 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 1.27 8.08 -51.93 -0.42 0.86 16 37 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 38 H 0.08 2.05 8.14 -51.93 -0.42 1.62 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 332.94 15.07 5.02 5.02 Total: -1.00 -28.35 332.94 -9.97 -38.32 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -6.59 Total: 1.73 kcal Atomic # 6 Polarization: -24.31 SS G_CDS: -1.47 Total: -25.78 kcal Atomic # 7 Polarization: -24.49 SS G_CDS: 0.72 Total: -23.78 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.41 Total: -5.21 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -4.26 SS G_CDS: -2.21 Total: -6.47 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.35 -9.97 -38.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902543901.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.864 kcal (2) G-P(sol) polarization free energy of solvation -28.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds