Wall clock time and date at job start Mon Mar 30 2020 07:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86795 * 119.99927 * 2 1 4 4 H 1.48499 * 109.46848 * 269.99784 * 3 2 1 5 5 H 1.48496 * 109.47388 * 29.99589 * 3 2 1 6 6 H 1.48505 * 109.47168 * 150.00130 * 3 2 1 7 7 C 1.37875 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99817 * 173.91226 * 7 2 1 9 9 C 1.50702 * 120.00104 * 353.91786 * 7 2 1 10 10 C 1.52997 * 115.55368 * 84.88885 * 9 7 2 11 11 S 1.81398 * 109.47060 * 39.92880 * 10 9 7 12 12 C 1.81403 * 102.99846 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47030 * 180.02562 * 12 11 10 14 14 H 1.08998 * 115.56854 * 29.41245 * 13 12 11 15 15 C 1.53184 * 117.51848 * 243.64126 * 13 12 11 16 16 C 1.52131 * 59.77828 * 252.52211 * 15 13 12 17 17 C 1.54036 * 121.47800 * 249.14791 * 16 15 13 18 18 C 1.55190 * 101.82830 * 195.69697 * 17 16 15 19 19 O 1.44453 * 103.63306 * 36.32393 * 18 17 16 20 20 C 1.43990 * 107.04894 * 320.43700 * 19 18 17 21 21 C 1.53004 * 117.51271 * 230.58715 * 9 7 2 22 22 C 1.52998 * 60.00005 * 107.48166 * 21 9 7 23 23 H 0.96997 * 119.99605 * 355.01804 * 1 2 3 24 24 H 1.08999 * 109.46910 * 279.93525 * 10 9 7 25 25 H 1.08999 * 109.47312 * 159.93082 * 10 9 7 26 26 H 1.08999 * 109.47263 * 60.00227 * 12 11 10 27 27 H 1.09004 * 109.47157 * 300.00191 * 12 11 10 28 28 H 1.08994 * 117.52502 * 359.95069 * 15 13 12 29 29 H 1.09004 * 117.52266 * 145.10232 * 15 13 12 30 30 H 1.09007 * 110.95353 * 313.82438 * 17 16 15 31 31 H 1.08992 * 110.95921 * 77.55548 * 17 16 15 32 32 H 1.08995 * 110.58592 * 277.78768 * 18 17 16 33 33 H 1.08993 * 110.71575 * 154.92658 * 18 17 16 34 34 H 1.09001 * 109.97152 * 266.93468 * 20 19 18 35 35 H 1.09002 * 110.00661 * 145.68397 * 20 19 18 36 36 H 1.09004 * 117.49419 * 214.96725 * 21 9 7 37 37 H 1.08991 * 117.50119 * 359.97438 * 21 9 7 38 38 H 1.09000 * 117.49613 * 252.51457 * 22 21 9 39 39 H 1.09001 * 117.50680 * 107.48462 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0800 -1.1968 -0.0987 9 6 1.2574 -2.4954 0.1394 10 6 0.6978 -3.0771 -1.1604 11 16 1.9033 -2.8436 -2.4956 12 6 1.0732 -3.5835 -3.9288 13 6 1.9763 -3.4657 -5.1582 14 1 3.0474 -3.4627 -4.9565 15 6 1.4736 -2.6117 -6.3264 16 6 1.5049 -4.1282 -6.4442 17 6 2.4908 -4.8414 -7.3887 18 6 1.8793 -6.2654 -7.4704 19 8 0.4549 -6.0262 -7.4462 20 6 0.2211 -4.9645 -6.5021 21 6 1.7472 -3.4818 1.2016 22 6 0.4438 -2.7100 1.4173 23 1 -0.4849 0.8369 0.0730 24 1 -0.2310 -2.5674 -1.4162 25 1 0.5037 -4.1415 -1.0282 26 1 0.1351 -3.0608 -4.1152 27 1 0.8693 -4.6353 -3.7276 28 1 0.4995 -2.1348 -6.2191 29 1 2.2143 -2.0472 -6.8929 30 1 2.5040 -4.3660 -8.3696 31 1 3.4914 -4.8708 -6.9578 32 1 2.1825 -6.8626 -6.6105 33 1 2.1698 -6.7570 -8.3988 34 1 0.0040 -5.3817 -5.5188 35 1 -0.6117 -4.3454 -6.8358 36 1 1.6707 -4.5451 0.9743 37 1 2.6102 -3.1898 1.7998 38 1 0.4493 -1.9101 2.1576 39 1 -0.4901 -3.2655 1.3320 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902543901.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:52 Heat of formation + Delta-G solvation = -18.938761 kcal Electronic energy + Delta-G solvation = -18039.393586 eV Core-core repulsion = 15266.902869 eV Total energy + Delta-G solvation = -2772.490717 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.124 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.92211 -38.40830 -37.51449 -33.95993 -31.71824 -29.78065 -29.28628 -28.00178 -27.27668 -23.57838 -22.92569 -22.35066 -21.07998 -20.19243 -18.16244 -17.31066 -17.03646 -16.76961 -16.53323 -16.02811 -15.71159 -15.39976 -14.99359 -14.90187 -14.58884 -14.00645 -13.83704 -13.75219 -13.32047 -13.03611 -12.84796 -12.80413 -12.56171 -12.37417 -12.34228 -12.00164 -11.89545 -11.53541 -11.06323 -11.03158 -10.70784 -10.56595 -10.51069 -10.37632 -9.85083 -8.28874 -8.07098 -6.15403 0.95604 1.41929 1.44585 1.52566 2.05655 2.46851 2.66710 2.95026 3.23238 3.29497 3.48156 3.68562 3.74153 3.94518 4.20207 4.23118 4.31775 4.32309 4.40854 4.49763 4.53705 4.64717 4.68272 4.68560 4.74627 4.77590 4.86231 4.88085 4.95856 5.00916 5.04988 5.08770 5.18820 5.22448 5.56113 5.62554 5.80430 5.84406 6.40108 6.86024 7.51310 9.00954 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.025330 B = 0.004438 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.140434 B = 6306.983688 C = 6907.333938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.036 3.964 3 Si 0.938 3.062 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.487 4.487 8 H 0.047 0.953 9 C 0.025 3.975 10 C -0.021 4.021 11 S -0.251 6.251 12 C -0.065 4.065 13 C -0.118 4.118 14 H 0.110 0.890 15 C -0.149 4.149 16 C -0.149 4.149 17 C -0.116 4.116 18 C 0.044 3.956 19 O -0.398 6.398 20 C 0.079 3.921 21 C -0.185 4.185 22 C -0.154 4.154 23 H 0.258 0.742 24 H 0.051 0.949 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.112 0.888 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.112 0.888 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.569 -9.699 -13.395 16.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.164 4.164 3 Si 0.764 3.236 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.526 4.526 8 H 0.065 0.935 9 C 0.023 3.977 10 C -0.170 4.170 11 S -0.022 6.022 12 C -0.213 4.213 13 C -0.137 4.137 14 H 0.128 0.872 15 C -0.186 4.186 16 C -0.151 4.151 17 C -0.153 4.153 18 C -0.032 4.032 19 O -0.318 6.318 20 C 0.003 3.997 21 C -0.222 4.222 22 C -0.194 4.194 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.099 0.901 28 H 0.116 0.884 29 H 0.130 0.870 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.082 0.918 33 H 0.130 0.870 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.242 -9.220 -13.542 16.700 hybrid contribution -0.960 0.719 0.559 1.323 sum 2.281 -8.501 -12.983 15.685 Atomic orbital electron populations 1.70096 1.06844 1.27142 1.50160 1.25460 0.95356 1.01286 0.94326 0.85875 0.79049 0.80571 0.78084 1.20471 1.20928 1.19595 1.20426 0.92257 0.89953 1.49916 0.93524 1.18619 0.99058 0.94292 0.85690 1.22784 0.97824 1.00026 0.96365 1.87103 1.30351 1.79716 1.04999 1.22894 1.00479 1.02545 0.95344 1.21817 0.99298 1.05443 0.87191 0.87153 1.23129 1.03463 0.91704 1.00336 1.22336 0.98154 0.95660 0.98913 1.22647 0.98412 0.94917 0.99312 1.23746 0.79712 0.96503 1.03267 1.88883 1.25190 1.54862 1.62852 1.22552 0.96095 0.88028 0.93058 1.23068 0.97430 0.96488 1.05181 1.22477 0.93565 1.01255 1.02091 0.93309 0.92982 0.91610 0.91074 0.90058 0.88413 0.86972 0.89009 0.88969 0.91810 0.86963 0.92169 0.89118 0.88993 0.90393 0.91975 0.90588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.09 12.93 21.45 0.28 -50.81 16 2 C 0.04 1.98 5.39 84.65 0.46 2.43 16 3 Si 0.94 43.81 29.54 68.60 2.03 45.83 16 4 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.49 -26.36 7.55 25.60 0.19 -26.17 16 8 H 0.05 2.61 7.82 -2.91 -0.02 2.58 16 9 C 0.02 1.19 1.65 -52.93 -0.09 1.11 16 10 C -0.02 -0.94 6.05 71.98 0.44 -0.51 16 11 S -0.25 -10.25 20.53 -56.49 -1.16 -11.41 16 12 C -0.06 -1.97 5.42 71.98 0.39 -1.58 16 13 C -0.12 -3.02 5.62 -11.01 -0.06 -3.09 16 14 H 0.11 2.93 8.06 -2.39 -0.02 2.91 16 15 C -0.15 -3.31 9.95 30.37 0.30 -3.01 16 16 C -0.15 -3.11 2.44 -52.29 -0.13 -3.24 16 17 C -0.12 -1.91 6.94 31.70 0.22 -1.69 16 18 C 0.04 0.74 7.73 72.73 0.56 1.30 16 19 O -0.40 -9.25 11.53 -148.98 -1.72 -10.97 16 20 C 0.08 1.74 7.12 72.09 0.51 2.25 16 21 C -0.18 -7.76 9.88 30.59 0.30 -7.46 16 22 C -0.15 -7.08 9.46 30.59 0.29 -6.79 16 23 H 0.26 14.03 8.32 -92.71 -0.77 13.26 16 24 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 25 H 0.07 2.55 7.95 -2.39 -0.02 2.54 16 26 H 0.07 2.20 7.88 -2.39 -0.02 2.19 16 27 H 0.08 2.29 7.41 -2.39 -0.02 2.28 16 28 H 0.10 2.20 8.04 -2.39 -0.02 2.18 16 29 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 30 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.09 1.36 8.13 -2.39 -0.02 1.34 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.06 1.36 6.92 -2.39 -0.02 1.34 16 35 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.09 3.36 8.08 -2.39 -0.02 3.34 16 37 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 38 H 0.06 3.08 8.14 -2.39 -0.02 3.06 16 39 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -60.10 332.94 3.82 -56.28 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 1.00 Total: 17.50 kcal Atomic # 6 Polarization: -49.82 SS G_CDS: 3.39 Total: -46.43 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 0.28 Total: -50.81 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: -1.72 Total: -10.97 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: -10.25 SS G_CDS: -1.16 Total: -11.41 kcal Total: -60.10 3.82 -56.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902543901.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.341 kcal (2) G-P(sol) polarization free energy of solvation -60.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds