Wall clock time and date at job start Mon Mar 30 2020 07:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38035 * 120.06386 * 2 1 4 4 C 1.38297 * 120.12533 * 179.69921 * 3 2 1 5 5 C 1.38356 * 120.23898 * 0.02579 * 4 3 2 6 6 C 1.37993 * 120.12045 * 0.02562 * 5 4 3 7 7 C 1.39323 * 120.05870 * 179.72609 * 2 1 3 8 8 C 1.48394 * 120.12029 * 0.25061 * 7 2 1 9 9 C 1.39355 * 120.11612 * 56.03696 * 8 7 2 10 10 C 1.37998 * 119.87582 * 179.97438 * 9 8 7 11 11 C 1.38352 * 120.12127 * 0.02562 * 10 9 8 12 12 C 1.38298 * 120.24246 * 0.02562 * 11 10 9 13 13 C 1.50694 * 119.93870 * 180.02562 * 12 11 10 14 14 H 1.09002 * 109.47045 * 205.00219 * 13 12 11 15 15 O 1.42895 * 109.47131 * 324.99885 * 13 12 11 16 16 C 1.50698 * 109.47220 * 85.00012 * 13 12 11 17 17 H 1.08001 * 119.99878 * 359.97438 * 16 13 12 18 18 C 1.37880 * 119.99777 * 179.97438 * 16 13 12 19 19 N 1.31509 * 120.00126 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99654 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.47149 * 60.00263 * 20 18 16 22 22 H 1.48504 * 109.46863 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47454 * 299.99706 * 20 18 16 24 24 C 1.38048 * 120.11943 * 359.67790 * 12 11 10 25 25 H 1.09004 * 109.47290 * 95.35709 * 1 2 3 26 26 H 1.08998 * 109.47560 * 215.36271 * 1 2 3 27 27 H 1.09001 * 109.46842 * 335.35863 * 1 2 3 28 28 H 1.08001 * 119.94194 * 359.72856 * 3 2 1 29 29 H 1.07998 * 119.88454 * 179.97438 * 4 3 2 30 30 H 1.08002 * 119.93689 * 179.97438 * 5 4 3 31 31 H 1.08002 * 120.05657 * 179.97438 * 6 5 4 32 32 H 1.08001 * 120.06785 * 359.97231 * 9 8 7 33 33 H 1.08006 * 119.93927 * 180.02562 * 10 9 8 34 34 H 1.07995 * 119.87551 * 180.02562 * 11 10 9 35 35 H 0.96701 * 114.00205 * 60.00217 * 15 13 12 36 36 H 0.97002 * 119.99727 * 180.02562 * 19 18 16 37 37 H 1.08001 * 120.06046 * 180.31960 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1947 0.0000 4 6 3.5815 1.1961 0.0063 5 6 4.2795 0.0016 0.0121 6 6 3.5984 -1.1985 0.0110 7 6 2.2049 -1.2058 0.0058 8 6 1.4669 -2.4933 0.0063 9 6 0.5387 -2.7676 -0.9963 10 6 -0.1443 -3.9667 -0.9913 11 6 0.0906 -4.8954 0.0070 12 6 1.0098 -4.6278 1.0050 13 6 1.2607 -5.6445 2.0886 14 1 1.6326 -5.1404 2.9807 15 8 0.0412 -6.3219 2.3978 16 6 2.2837 -6.6436 1.6129 17 1 2.7093 -6.5518 0.6246 18 6 2.6763 -7.6749 2.4396 19 7 2.1585 -7.7864 3.6433 20 14 3.9439 -8.9138 1.8497 21 1 5.2112 -8.2101 1.5273 22 1 4.1921 -9.9149 2.9181 23 1 3.4364 -9.6011 0.6350 24 6 1.7032 -3.4341 1.0062 25 1 -0.3634 -0.0959 -1.0232 26 1 -0.3634 -0.8380 0.5947 27 1 -0.3633 0.9341 0.4285 28 1 1.6586 2.1300 -0.0044 29 1 4.1186 2.1331 0.0058 30 1 5.3595 0.0085 0.0165 31 1 4.1443 -2.1304 0.0151 32 1 0.3542 -2.0432 -1.7758 33 1 -0.8636 -4.1806 -1.7681 34 1 -0.4459 -5.8326 0.0068 35 1 -0.3477 -6.7936 1.6485 36 1 2.4350 -8.5117 4.2250 37 1 2.4246 -3.2283 1.7831 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535685501.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:59 Heat of formation + Delta-G solvation = -14.397518 kcal Electronic energy + Delta-G solvation = -19347.637253 eV Core-core repulsion = 16439.899508 eV Total energy + Delta-G solvation = -2907.737745 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.75946 -38.23567 -35.51611 -32.92433 -32.22449 -31.95449 -30.67378 -28.76295 -26.82613 -26.54675 -23.30735 -23.06579 -21.39045 -21.14775 -19.64614 -17.09118 -16.70843 -15.90962 -15.31022 -15.10924 -14.68728 -14.56756 -14.50225 -13.77561 -13.50687 -13.15491 -12.91058 -12.86829 -12.43619 -12.29396 -12.02614 -11.90935 -11.42590 -11.39026 -11.03097 -10.93880 -10.92606 -10.75410 -10.42004 -10.21885 -9.31624 -8.90781 -8.70171 -8.64442 -8.39730 -8.06283 -7.77702 -6.05667 -4.25133 1.20820 1.45888 2.01134 2.06693 3.27001 3.32148 3.34582 3.82215 4.29545 4.44436 4.83611 4.91614 4.97118 5.13284 5.20582 5.33465 5.40832 5.49535 5.55950 5.69855 5.74026 5.80533 5.89113 5.97419 6.06835 6.15494 6.25160 6.33093 6.39935 6.52950 6.59935 6.67366 6.71546 6.96677 7.05813 7.09800 7.13836 7.57637 7.72048 7.81436 8.08153 8.77281 9.28207 9.50827 10.97684 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.022518 B = 0.004940 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.164571 B = 5666.122190 C = 6349.551395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.076 4.076 3 C -0.124 4.124 4 C -0.124 4.124 5 C -0.126 4.126 6 C -0.103 4.103 7 C -0.034 4.034 8 C -0.058 4.058 9 C -0.128 4.128 10 C -0.123 4.123 11 C -0.113 4.113 12 C -0.066 4.066 13 C 0.258 3.742 14 H 0.067 0.933 15 O -0.560 6.560 16 C -0.565 4.565 17 H 0.057 0.943 18 C 0.080 3.920 19 N -0.859 5.859 20 Si 0.892 3.108 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.275 1.275 24 C -0.103 4.103 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.126 0.874 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.345 0.655 36 H 0.263 0.737 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.104 14.609 -8.484 16.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.076 4.076 3 C -0.142 4.142 4 C -0.142 4.142 5 C -0.144 4.144 6 C -0.121 4.121 7 C -0.034 4.034 8 C -0.058 4.058 9 C -0.146 4.146 10 C -0.141 4.141 11 C -0.131 4.131 12 C -0.066 4.066 13 C 0.201 3.799 14 H 0.085 0.915 15 O -0.363 6.363 16 C -0.602 4.602 17 H 0.076 0.924 18 C -0.126 4.126 19 N -0.494 5.494 20 Si 0.719 3.281 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.121 4.121 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.138 0.862 31 H 0.144 0.856 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.190 0.810 36 H 0.072 0.928 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.994 14.764 -7.695 16.679 hybrid contribution 0.827 -0.930 -0.898 1.534 sum -0.167 13.834 -8.592 16.286 Atomic orbital electron populations 1.20841 0.91161 1.02702 1.02344 1.19966 0.96082 0.92175 0.99371 1.20925 0.94238 0.97156 1.01872 1.21110 0.94241 0.97887 1.00971 1.21058 0.99762 0.92401 1.01191 1.21319 0.93355 0.98400 0.99053 1.18794 0.92857 0.92001 0.99704 1.18627 0.97635 0.92999 0.96497 1.20896 0.97721 0.97441 0.98520 1.20947 1.00129 0.94258 0.98810 1.20978 0.98752 0.99040 0.94358 1.21360 0.92843 0.95071 0.97348 1.18507 0.83338 0.87417 0.90674 0.91516 1.86614 1.40631 1.69875 1.39195 1.21488 1.25253 1.11889 1.01598 0.92440 1.25044 0.95513 0.97502 0.94562 1.70062 1.40972 1.31109 1.07279 0.86678 0.81915 0.80978 0.78503 1.20078 1.21108 1.20050 1.21026 0.99848 0.92921 0.98270 0.91288 0.90812 0.92032 0.86290 0.86413 0.86163 0.85634 0.87048 0.86792 0.86397 0.80987 0.92758 0.86363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 8.58 36.01 0.31 -1.02 16 2 C -0.08 -1.02 5.88 -104.29 -0.61 -1.63 16 3 C -0.12 -1.45 9.67 -39.63 -0.38 -1.83 16 4 C -0.12 -1.40 10.04 -39.52 -0.40 -1.80 16 5 C -0.13 -1.54 10.03 -39.63 -0.40 -1.94 16 6 C -0.10 -1.49 9.61 -39.26 -0.38 -1.87 16 7 C -0.03 -0.51 5.41 -104.90 -0.57 -1.08 16 8 C -0.06 -0.98 4.51 -104.90 -0.47 -1.45 16 9 C -0.13 -2.00 8.28 -39.25 -0.33 -2.32 16 10 C -0.12 -1.98 10.03 -39.63 -0.40 -2.38 16 11 C -0.11 -2.13 9.32 -39.52 -0.37 -2.50 16 12 C -0.07 -1.40 4.94 -104.67 -0.52 -1.92 16 13 C 0.26 6.54 3.06 -29.04 -0.09 6.45 16 14 H 0.07 1.85 8.05 -51.93 -0.42 1.43 16 15 O -0.56 -14.33 12.53 -35.23 -0.44 -14.77 16 16 C -0.56 -15.35 8.75 -34.44 -0.30 -15.65 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 18 C 0.08 2.22 5.40 -17.82 -0.10 2.12 16 19 N -0.86 -25.05 12.84 55.43 0.71 -24.34 16 20 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 C -0.10 -2.01 9.24 -39.25 -0.36 -2.37 16 25 H 0.07 0.72 7.57 -51.93 -0.39 0.33 16 26 H 0.07 0.98 7.01 -51.93 -0.36 0.61 16 27 H 0.06 0.60 8.05 -51.93 -0.42 0.18 16 28 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 29 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 31 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 32 H 0.11 1.50 7.33 -52.49 -0.38 1.11 16 33 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 34 H 0.12 2.09 6.60 -52.49 -0.35 1.74 16 35 H 0.35 7.74 7.38 45.56 0.34 8.08 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 315.37 15.07 4.75 4.75 Total: -1.00 -30.40 315.37 -9.42 -39.82 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -4.07 Total: 9.71 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: -5.36 Total: -31.18 kcal Atomic # 7 Polarization: -25.05 SS G_CDS: 0.71 Total: -24.34 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.44 Total: -14.77 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.40 -9.42 -39.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535685501.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.427 kcal (2) G-P(sol) polarization free energy of solvation -30.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds