Wall clock time and date at job start Mon Mar 30 2020 07:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38035 * 120.06386 * 2 1 4 4 C 1.38297 * 120.12533 * 179.69921 * 3 2 1 5 5 C 1.38356 * 120.23898 * 0.02579 * 4 3 2 6 6 C 1.37993 * 120.12045 * 0.02562 * 5 4 3 7 7 C 1.39323 * 120.05870 * 179.72609 * 2 1 3 8 8 C 1.48394 * 120.12029 * 0.25061 * 7 2 1 9 9 C 1.39355 * 120.11612 * 56.03696 * 8 7 2 10 10 C 1.37998 * 119.87582 * 179.97438 * 9 8 7 11 11 C 1.38352 * 120.12127 * 0.02562 * 10 9 8 12 12 C 1.38298 * 120.24246 * 0.02562 * 11 10 9 13 13 C 1.50694 * 119.93870 * 180.02562 * 12 11 10 14 14 H 1.09002 * 109.47045 * 205.00219 * 13 12 11 15 15 O 1.42895 * 109.47131 * 324.99885 * 13 12 11 16 16 C 1.50698 * 109.47220 * 85.00012 * 13 12 11 17 17 H 1.08001 * 119.99878 * 359.97438 * 16 13 12 18 18 C 1.37880 * 119.99777 * 179.97438 * 16 13 12 19 19 N 1.31509 * 120.00126 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99654 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.47149 * 60.00263 * 20 18 16 22 22 H 1.48504 * 109.46863 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47454 * 299.99706 * 20 18 16 24 24 C 1.38048 * 120.11943 * 359.67790 * 12 11 10 25 25 H 1.09004 * 109.47290 * 95.35709 * 1 2 3 26 26 H 1.08998 * 109.47560 * 215.36271 * 1 2 3 27 27 H 1.09001 * 109.46842 * 335.35863 * 1 2 3 28 28 H 1.08001 * 119.94194 * 359.72856 * 3 2 1 29 29 H 1.07998 * 119.88454 * 179.97438 * 4 3 2 30 30 H 1.08002 * 119.93689 * 179.97438 * 5 4 3 31 31 H 1.08002 * 120.05657 * 179.97438 * 6 5 4 32 32 H 1.08001 * 120.06785 * 359.97231 * 9 8 7 33 33 H 1.08006 * 119.93927 * 180.02562 * 10 9 8 34 34 H 1.07995 * 119.87551 * 180.02562 * 11 10 9 35 35 H 0.96701 * 114.00205 * 60.00217 * 15 13 12 36 36 H 0.97002 * 119.99727 * 180.02562 * 19 18 16 37 37 H 1.08001 * 120.06046 * 180.31960 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1947 0.0000 4 6 3.5815 1.1961 0.0063 5 6 4.2795 0.0016 0.0121 6 6 3.5984 -1.1985 0.0110 7 6 2.2049 -1.2058 0.0058 8 6 1.4669 -2.4933 0.0063 9 6 0.5387 -2.7676 -0.9963 10 6 -0.1443 -3.9667 -0.9913 11 6 0.0906 -4.8954 0.0070 12 6 1.0098 -4.6278 1.0050 13 6 1.2607 -5.6445 2.0886 14 1 1.6326 -5.1404 2.9807 15 8 0.0412 -6.3219 2.3978 16 6 2.2837 -6.6436 1.6129 17 1 2.7093 -6.5518 0.6246 18 6 2.6763 -7.6749 2.4396 19 7 2.1585 -7.7864 3.6433 20 14 3.9439 -8.9138 1.8497 21 1 5.2112 -8.2101 1.5273 22 1 4.1921 -9.9149 2.9181 23 1 3.4364 -9.6011 0.6350 24 6 1.7032 -3.4341 1.0062 25 1 -0.3634 -0.0959 -1.0232 26 1 -0.3634 -0.8380 0.5947 27 1 -0.3633 0.9341 0.4285 28 1 1.6586 2.1300 -0.0044 29 1 4.1186 2.1331 0.0058 30 1 5.3595 0.0085 0.0165 31 1 4.1443 -2.1304 0.0151 32 1 0.3542 -2.0432 -1.7758 33 1 -0.8636 -4.1806 -1.7681 34 1 -0.4459 -5.8326 0.0068 35 1 -0.3477 -6.7936 1.6485 36 1 2.4350 -8.5117 4.2250 37 1 2.4246 -3.2283 1.7831 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535685501.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:58 Heat of formation + Delta-G solvation = -31.346162 kcal Electronic energy + Delta-G solvation = -19348.372201 eV Core-core repulsion = 16439.899508 eV Total energy + Delta-G solvation = -2908.472694 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.94454 -39.54920 -37.34865 -34.35064 -33.97640 -33.09082 -32.22757 -29.96612 -28.55531 -27.73158 -25.08276 -24.32561 -22.51969 -22.44087 -21.00253 -19.14642 -18.08669 -17.09013 -16.74043 -16.48300 -16.39150 -15.97459 -15.93245 -15.10370 -14.82539 -14.42392 -14.26146 -14.12536 -13.93807 -13.69708 -13.34239 -13.13200 -13.01540 -12.81788 -12.76118 -12.48298 -12.32579 -12.13428 -11.89642 -11.64812 -11.25107 -10.78828 -10.37270 -10.05976 -9.64711 -9.53284 -9.11360 -8.17028 -6.45037 0.07750 0.48471 0.59222 0.79111 1.38287 1.39877 1.48577 2.35854 2.79849 2.98926 3.08081 3.69173 3.99235 4.02409 4.11398 4.12310 4.23230 4.23881 4.37477 4.46274 4.58629 4.61073 4.77066 4.80539 4.83570 4.92394 5.02854 5.15372 5.19733 5.32172 5.35309 5.51976 5.58413 5.60669 5.61419 5.65302 5.79859 5.95551 6.02207 6.12698 6.19160 6.64712 7.26072 7.44527 8.85987 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.022518 B = 0.004940 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.164571 B = 5666.122190 C = 6349.551395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.083 4.083 3 C -0.124 4.124 4 C -0.118 4.118 5 C -0.131 4.131 6 C -0.124 4.124 7 C -0.063 4.063 8 C -0.048 4.048 9 C -0.119 4.119 10 C -0.111 4.111 11 C -0.127 4.127 12 C -0.092 4.092 13 C 0.262 3.738 14 H 0.025 0.975 15 O -0.575 6.575 16 C -0.575 4.575 17 H 0.054 0.946 18 C 0.029 3.971 19 N -0.899 5.899 20 Si 0.961 3.039 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.265 1.265 24 C -0.124 4.124 25 H 0.084 0.916 26 H 0.051 0.949 27 H 0.082 0.918 28 H 0.150 0.850 29 H 0.151 0.849 30 H 0.140 0.860 31 H 0.111 0.889 32 H 0.144 0.856 33 H 0.153 0.847 34 H 0.123 0.877 35 H 0.358 0.642 36 H 0.264 0.736 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.150 16.683 -10.935 19.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.083 4.083 3 C -0.141 4.141 4 C -0.135 4.135 5 C -0.149 4.149 6 C -0.142 4.142 7 C -0.063 4.063 8 C -0.048 4.048 9 C -0.136 4.136 10 C -0.129 4.129 11 C -0.145 4.145 12 C -0.093 4.093 13 C 0.204 3.796 14 H 0.043 0.957 15 O -0.380 6.380 16 C -0.613 4.613 17 H 0.072 0.928 18 C -0.174 4.174 19 N -0.535 5.535 20 Si 0.785 3.215 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.190 1.190 24 C -0.142 4.142 25 H 0.103 0.897 26 H 0.070 0.930 27 H 0.101 0.899 28 H 0.167 0.833 29 H 0.169 0.831 30 H 0.158 0.842 31 H 0.129 0.871 32 H 0.161 0.839 33 H 0.171 0.829 34 H 0.141 0.859 35 H 0.204 0.796 36 H 0.073 0.927 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.043 16.843 -10.162 19.699 hybrid contribution 0.835 -1.410 -0.158 1.646 sum -0.208 15.433 -10.319 18.566 Atomic orbital electron populations 1.20863 0.90034 1.02943 1.03066 1.20211 0.97053 0.92001 0.99051 1.21313 0.94662 0.97646 1.00525 1.21537 0.94430 0.98683 0.98892 1.21331 1.00935 0.92006 1.00596 1.21370 0.93439 0.98987 1.00434 1.18836 0.93218 0.91942 1.02311 1.18809 0.97445 0.93080 0.95476 1.21291 0.96306 0.97767 0.98264 1.21322 0.99985 0.93272 0.98309 1.21096 0.98477 1.00235 0.94675 1.20974 0.95533 0.95061 0.97713 1.18184 0.82932 0.88000 0.90462 0.95683 1.86531 1.40719 1.70413 1.40365 1.21769 1.25596 1.12482 1.01409 0.92787 1.25905 0.97481 0.99495 0.94540 1.70197 1.42741 1.32020 1.08579 0.85587 0.79212 0.78406 0.78260 1.19550 1.20553 1.18998 1.20958 1.00250 0.93651 0.99340 0.89726 0.92989 0.89903 0.83267 0.83150 0.84193 0.87128 0.83868 0.82892 0.85915 0.79602 0.92701 0.88209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.33 8.58 71.24 0.61 -1.72 16 2 C -0.08 -2.04 5.88 -19.65 -0.12 -2.16 16 3 C -0.12 -2.47 9.67 22.24 0.21 -2.25 16 4 C -0.12 -2.26 10.04 22.31 0.22 -2.04 16 5 C -0.13 -2.98 10.03 22.24 0.22 -2.76 16 6 C -0.12 -3.60 9.61 22.48 0.22 -3.38 16 7 C -0.06 -1.89 5.41 -20.04 -0.11 -2.00 16 8 C -0.05 -1.64 4.51 -20.04 -0.09 -1.73 16 9 C -0.12 -3.47 8.28 22.48 0.19 -3.28 16 10 C -0.11 -3.33 10.03 22.24 0.22 -3.11 16 11 C -0.13 -4.78 9.32 22.31 0.21 -4.57 16 12 C -0.09 -4.14 4.94 -19.90 -0.10 -4.24 16 13 C 0.26 14.12 3.06 29.10 0.09 14.21 16 14 H 0.03 1.53 8.05 -2.39 -0.02 1.51 16 15 O -0.58 -30.95 12.53 -148.98 -1.87 -32.82 16 16 C -0.58 -32.58 8.75 25.60 0.22 -32.36 16 17 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 18 C 0.03 1.62 5.40 84.66 0.46 2.08 16 19 N -0.90 -54.38 12.84 21.45 0.28 -54.10 16 20 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 24 C -0.12 -5.14 9.24 22.48 0.21 -4.93 16 25 H 0.08 1.47 7.57 -2.39 -0.02 1.45 16 26 H 0.05 1.30 7.01 -2.39 -0.02 1.29 16 27 H 0.08 1.34 8.05 -2.39 -0.02 1.32 16 28 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 29 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 30 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 31 H 0.11 3.39 8.06 -2.91 -0.02 3.37 16 32 H 0.14 3.30 7.33 -2.91 -0.02 3.28 16 33 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 34 H 0.12 4.37 6.60 -2.91 -0.02 4.35 16 35 H 0.36 16.72 7.38 -74.06 -0.55 16.18 16 36 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 37 H 0.10 4.34 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -68.73 315.37 3.63 -65.10 By element: Atomic # 1 Polarization: 29.55 SS G_CDS: 0.53 Total: 30.07 kcal Atomic # 6 Polarization: -56.91 SS G_CDS: 2.67 Total: -54.23 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: 0.28 Total: -54.10 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: -1.87 Total: -32.82 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -68.73 3.63 -65.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535685501.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.753 kcal (2) G-P(sol) polarization free energy of solvation -68.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds