Wall clock time and date at job start Mon Mar 30 2020 06:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47239 * 2 1 4 4 N 1.46504 * 109.46894 * 120.00079 * 2 1 3 5 5 C 1.38866 * 119.99739 * 274.99538 * 4 2 1 6 6 C 1.39566 * 119.84047 * 0.25540 * 5 4 2 7 7 C 1.36341 * 120.15728 * 180.25595 * 6 5 4 8 8 C 1.40890 * 119.83675 * 359.49286 * 7 6 5 9 9 C 1.41130 * 120.15869 * 180.27698 * 8 7 6 10 10 H 1.08001 * 120.00266 * 154.52104 * 9 8 7 11 11 C 1.39872 * 119.99649 * 334.53027 * 9 8 7 12 12 N 1.30895 * 119.99806 * 343.06174 * 11 9 8 13 13 Si 1.86802 * 119.99630 * 163.06055 * 11 9 8 14 14 H 1.48503 * 109.47104 * 60.00260 * 13 11 9 15 15 H 1.48504 * 109.46748 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47517 * 299.99898 * 13 11 9 17 17 C 1.40892 * 119.68821 * 0.25538 * 8 7 6 18 18 C 1.36340 * 119.83544 * 359.97438 * 17 8 7 19 19 C 1.50699 * 109.47256 * 239.99614 * 2 1 3 20 20 C 1.38655 * 120.79274 * 279.72408 * 19 2 1 21 21 C 1.38202 * 119.16100 * 179.75367 * 20 19 2 22 22 N 1.31876 * 120.76347 * 0.52834 * 21 20 19 23 23 C 1.31868 * 121.72757 * 359.74421 * 22 21 20 24 24 C 1.38207 * 120.76489 * 359.97438 * 23 22 21 25 25 H 1.09004 * 109.47033 * 299.99965 * 1 2 3 26 26 H 1.08996 * 109.47221 * 59.99985 * 1 2 3 27 27 H 1.09002 * 109.46898 * 180.02562 * 1 2 3 28 28 H 0.96998 * 120.00104 * 95.00054 * 4 2 1 29 29 H 1.07995 * 119.92348 * 0.02562 * 6 5 4 30 30 H 1.07993 * 120.08407 * 179.77024 * 7 6 5 31 31 H 0.97009 * 119.99636 * 180.02562 * 12 11 9 32 32 H 1.07993 * 120.08152 * 180.02562 * 17 8 7 33 33 H 1.08002 * 119.91699 * 180.02562 * 18 17 8 34 34 H 1.07996 * 120.41457 * 359.97438 * 20 19 2 35 35 H 1.08001 * 119.61433 * 180.24658 * 21 20 19 36 36 H 1.08000 * 119.61873 * 179.97438 * 23 22 21 37 37 H 1.07993 * 120.41846 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1510 0.0022 2.3924 6 6 1.8131 1.3550 2.4525 7 6 1.9458 2.0427 3.6223 8 6 2.4151 1.3818 4.7746 9 6 2.5495 2.0858 5.9904 10 1 2.5016 1.5551 6.9299 11 6 2.7445 3.4708 5.9787 12 7 3.1307 4.0680 4.8799 13 14 2.4538 4.4680 7.5313 14 1 3.3597 3.9872 8.6054 15 1 2.7286 5.9015 7.2576 16 1 1.0427 4.3081 7.9655 17 6 2.7493 0.0148 4.7077 18 6 2.6160 -0.6592 3.5300 19 6 2.0324 -0.7105 -1.2304 20 6 2.0794 -2.0953 -1.2810 21 6 2.5413 -2.7120 -2.4282 22 7 2.9439 -1.9989 -3.4620 23 6 2.9185 -0.6806 -3.4472 24 6 2.4640 0.0053 -2.3367 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 2.2490 -1.6318 1.1527 29 1 1.4493 1.8591 1.5695 30 1 1.6876 3.0904 3.6665 31 1 3.2663 5.0286 4.8719 32 1 3.1092 -0.4982 5.5872 33 1 2.8714 -1.7073 3.4773 34 1 1.7556 -2.6846 -0.4358 35 1 2.5772 -3.7903 -2.4771 36 1 3.2568 -0.1305 -4.3128 37 1 2.4452 1.0850 -2.3308 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037071431.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:12 Heat of formation + Delta-G solvation = 55.608045 kcal Electronic energy + Delta-G solvation = -19056.746574 eV Core-core repulsion = 16184.337248 eV Total energy + Delta-G solvation = -2872.409325 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.34704 -38.14541 -36.06779 -33.63699 -32.01359 -31.27962 -29.93868 -29.39255 -28.04789 -24.85266 -24.02121 -23.36009 -21.70954 -20.84592 -19.69771 -17.25074 -17.23288 -16.52484 -15.66925 -15.61131 -14.97236 -14.73558 -14.23510 -13.88273 -13.69945 -13.41138 -13.22068 -12.75102 -12.54693 -12.04028 -11.96262 -11.80729 -11.64758 -11.34434 -11.03265 -10.97810 -10.84987 -10.51399 -9.75834 -9.63751 -9.58535 -9.30471 -9.25176 -9.23906 -8.61238 -7.52986 -6.66140 -6.43821 -4.07016 1.04654 1.16785 2.90595 3.06779 3.12879 3.16150 3.32938 3.72090 4.03669 4.16530 4.36348 4.55042 4.74068 4.75593 5.01718 5.08997 5.34713 5.46963 5.56904 5.67246 5.74225 5.80227 5.89752 6.00384 6.21868 6.25657 6.29051 6.41436 6.60999 6.88291 6.90119 7.16827 7.32773 7.50893 7.65363 7.79605 7.86817 8.11937 8.24392 8.44173 8.63063 8.75512 9.03429 9.11655 10.35570 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.039163 B = 0.003683 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.786668 B = 7600.914408 C = 7879.393575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.196 3.804 3 H 0.086 0.914 4 N -0.754 5.754 5 C 0.091 3.909 6 C -0.164 4.164 7 C -0.124 4.124 8 C 0.076 3.924 9 C -0.468 4.468 10 H 0.072 0.928 11 C 0.075 3.925 12 N -0.808 5.808 13 Si 0.904 3.096 14 H -0.268 1.268 15 H -0.281 1.281 16 H -0.266 1.266 17 C -0.187 4.187 18 C -0.157 4.157 19 C -0.033 4.033 20 C -0.166 4.166 21 C 0.097 3.903 22 N -0.493 5.493 23 C 0.097 3.903 24 C -0.166 4.166 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.384 0.616 29 H 0.089 0.911 30 H 0.118 0.882 31 H 0.277 0.723 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.133 0.867 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.124 -6.234 -11.632 13.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.089 3.911 3 H 0.104 0.896 4 N -0.390 5.390 5 C -0.006 4.006 6 C -0.186 4.186 7 C -0.144 4.144 8 C 0.073 3.927 9 C -0.499 4.499 10 H 0.090 0.910 11 C -0.140 4.140 12 N -0.436 5.436 13 Si 0.729 3.271 14 H -0.193 1.193 15 H -0.206 1.206 16 H -0.191 1.191 17 C -0.207 4.207 18 C -0.179 4.179 19 C -0.042 4.042 20 C -0.186 4.186 21 C -0.059 4.059 22 N -0.202 5.202 23 C -0.059 4.059 24 C -0.186 4.186 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.217 0.783 29 H 0.107 0.893 30 H 0.136 0.864 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.151 0.849 35 H 0.171 0.829 36 H 0.172 0.828 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.803 -6.263 -12.531 14.287 hybrid contribution -0.232 0.632 1.438 1.588 sum -3.035 -5.630 -11.093 12.805 Atomic orbital electron populations 1.22287 0.95475 1.02100 1.02190 1.19521 0.93361 0.96231 0.82017 0.89649 1.43950 1.77339 1.11020 1.06659 1.17306 1.06121 0.91833 0.85303 1.20111 1.07928 0.92480 0.98033 1.20937 1.01263 0.99864 0.92304 1.17495 0.90814 0.90952 0.93398 1.19349 1.45029 0.91888 0.93645 0.90973 1.25790 0.92544 0.98401 0.97291 1.69838 1.33972 1.11321 1.28419 0.86452 0.79890 0.78379 0.82397 1.19267 1.20567 1.19081 1.20553 1.08080 0.96042 0.96007 1.19796 1.07546 0.97514 0.93015 1.20638 0.93919 0.94056 0.95605 1.21962 1.01853 0.94941 0.99823 1.22718 0.94258 1.00214 0.88745 1.67657 1.15238 1.08130 1.29166 1.22723 0.95539 0.90209 0.97447 1.22065 1.00689 1.01626 0.94247 0.91073 0.92661 0.92705 0.78277 0.89298 0.86382 0.91255 0.89034 0.89632 0.84892 0.82898 0.82815 0.84620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.38 37.16 0.35 -1.77 16 2 C 0.20 2.79 2.50 -69.08 -0.17 2.61 16 3 H 0.09 1.32 6.36 -51.93 -0.33 0.99 16 4 N -0.75 -12.53 5.18 -53.15 -0.28 -12.80 16 5 C 0.09 1.91 6.65 -83.68 -0.56 1.35 16 6 C -0.16 -3.70 8.73 -39.77 -0.35 -4.05 16 7 C -0.12 -3.18 8.63 -39.26 -0.34 -3.52 16 8 C 0.08 2.04 5.57 -106.79 -0.59 1.44 16 9 C -0.47 -12.61 9.03 -37.87 -0.34 -12.96 16 10 H 0.07 1.88 7.90 -52.49 -0.41 1.46 16 11 C 0.07 1.92 5.15 -17.34 -0.09 1.83 16 12 N -0.81 -21.26 10.96 55.54 0.61 -20.65 16 13 Si 0.90 19.09 29.59 -169.99 -5.03 14.06 16 14 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 15 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 16 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 17 C -0.19 -4.57 9.74 -39.26 -0.38 -4.95 16 18 C -0.16 -3.45 9.82 -39.77 -0.39 -3.84 16 19 C -0.03 -0.42 4.98 -104.31 -0.52 -0.94 16 20 C -0.17 -1.90 9.16 -39.44 -0.36 -2.27 16 21 C 0.10 1.09 11.18 -17.55 -0.20 0.89 16 22 N -0.49 -6.14 10.36 -13.25 -0.14 -6.27 16 23 C 0.10 1.08 11.18 -17.55 -0.20 0.89 16 24 C -0.17 -1.90 9.78 -39.44 -0.39 -2.28 16 25 H 0.07 1.06 7.63 -51.93 -0.40 0.66 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.38 5.74 6.93 -40.82 -0.28 5.46 16 29 H 0.09 1.81 6.03 -52.49 -0.32 1.49 16 30 H 0.12 3.15 6.19 -52.49 -0.32 2.83 16 31 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 32 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 33 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.13 1.35 7.00 -52.49 -0.37 0.98 16 35 H 0.15 1.29 8.06 -52.49 -0.42 0.86 16 36 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 311.79 15.07 4.70 4.70 Total: -1.00 -28.85 311.79 -9.19 -38.04 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -4.53 Total: 10.48 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: -4.52 Total: -27.55 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.20 Total: -39.72 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.85 -9.19 -38.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037071431.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.645 kcal (2) G-P(sol) polarization free energy of solvation -28.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds