Wall clock time and date at job start Mon Mar 30 2020 06:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47239 * 2 1 4 4 N 1.46504 * 109.46894 * 120.00079 * 2 1 3 5 5 C 1.38866 * 119.99739 * 274.99538 * 4 2 1 6 6 C 1.39566 * 119.84047 * 0.25540 * 5 4 2 7 7 C 1.36341 * 120.15728 * 180.25595 * 6 5 4 8 8 C 1.40890 * 119.83675 * 359.49286 * 7 6 5 9 9 C 1.41130 * 120.15869 * 180.27698 * 8 7 6 10 10 H 1.08001 * 120.00266 * 154.52104 * 9 8 7 11 11 C 1.39872 * 119.99649 * 334.53027 * 9 8 7 12 12 N 1.30895 * 119.99806 * 343.06174 * 11 9 8 13 13 Si 1.86802 * 119.99630 * 163.06055 * 11 9 8 14 14 H 1.48503 * 109.47104 * 60.00260 * 13 11 9 15 15 H 1.48504 * 109.46748 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47517 * 299.99898 * 13 11 9 17 17 C 1.40892 * 119.68821 * 0.25538 * 8 7 6 18 18 C 1.36340 * 119.83544 * 359.97438 * 17 8 7 19 19 C 1.50699 * 109.47256 * 239.99614 * 2 1 3 20 20 C 1.38655 * 120.79274 * 279.72408 * 19 2 1 21 21 C 1.38202 * 119.16100 * 179.75367 * 20 19 2 22 22 N 1.31876 * 120.76347 * 0.52834 * 21 20 19 23 23 C 1.31868 * 121.72757 * 359.74421 * 22 21 20 24 24 C 1.38207 * 120.76489 * 359.97438 * 23 22 21 25 25 H 1.09004 * 109.47033 * 299.99965 * 1 2 3 26 26 H 1.08996 * 109.47221 * 59.99985 * 1 2 3 27 27 H 1.09002 * 109.46898 * 180.02562 * 1 2 3 28 28 H 0.96998 * 120.00104 * 95.00054 * 4 2 1 29 29 H 1.07995 * 119.92348 * 0.02562 * 6 5 4 30 30 H 1.07993 * 120.08407 * 179.77024 * 7 6 5 31 31 H 0.97009 * 119.99636 * 180.02562 * 12 11 9 32 32 H 1.07993 * 120.08152 * 180.02562 * 17 8 7 33 33 H 1.08002 * 119.91699 * 180.02562 * 18 17 8 34 34 H 1.07996 * 120.41457 * 359.97438 * 20 19 2 35 35 H 1.08001 * 119.61433 * 180.24658 * 21 20 19 36 36 H 1.08000 * 119.61873 * 179.97438 * 23 22 21 37 37 H 1.07993 * 120.41846 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1510 0.0022 2.3924 6 6 1.8131 1.3550 2.4525 7 6 1.9458 2.0427 3.6223 8 6 2.4151 1.3818 4.7746 9 6 2.5495 2.0858 5.9904 10 1 2.5016 1.5551 6.9299 11 6 2.7445 3.4708 5.9787 12 7 3.1307 4.0680 4.8799 13 14 2.4538 4.4680 7.5313 14 1 3.3597 3.9872 8.6054 15 1 2.7286 5.9015 7.2576 16 1 1.0427 4.3081 7.9655 17 6 2.7493 0.0148 4.7077 18 6 2.6160 -0.6592 3.5300 19 6 2.0324 -0.7105 -1.2304 20 6 2.0794 -2.0953 -1.2810 21 6 2.5413 -2.7120 -2.4282 22 7 2.9439 -1.9989 -3.4620 23 6 2.9185 -0.6806 -3.4472 24 6 2.4640 0.0053 -2.3367 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 2.2490 -1.6318 1.1527 29 1 1.4493 1.8591 1.5695 30 1 1.6876 3.0904 3.6665 31 1 3.2663 5.0286 4.8719 32 1 3.1092 -0.4982 5.5872 33 1 2.8714 -1.7073 3.4773 34 1 1.7556 -2.6846 -0.4358 35 1 2.5772 -3.7903 -2.4771 36 1 3.2568 -0.1305 -4.3128 37 1 2.4452 1.0850 -2.3308 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037071431.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:12 Heat of formation + Delta-G solvation = 40.204465 kcal Electronic energy + Delta-G solvation = -19057.414523 eV Core-core repulsion = 16184.337248 eV Total energy + Delta-G solvation = -2873.077275 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.27458 -39.78680 -37.50079 -35.34436 -33.40284 -32.14325 -31.46072 -30.98851 -29.67513 -26.44896 -25.16070 -24.34447 -23.26750 -22.45562 -21.17742 -19.15041 -18.47493 -17.63027 -17.02104 -16.66626 -16.47660 -16.05178 -15.62138 -15.17298 -14.74756 -14.66123 -14.47717 -14.23537 -14.18938 -13.69392 -13.55036 -13.23208 -12.91213 -12.73487 -12.68623 -12.44637 -12.28000 -12.14100 -11.58290 -11.14609 -11.09464 -10.62130 -10.48766 -10.27420 -10.07839 -9.39491 -8.53931 -8.17817 -6.01430 0.20837 0.24971 1.11828 1.19671 1.40563 1.51121 1.60078 2.27788 2.74239 2.85598 2.93996 3.50857 3.61878 3.84955 3.88468 4.14095 4.24182 4.30324 4.40266 4.49143 4.51214 4.69506 4.73849 4.86114 4.92454 5.02160 5.04766 5.14613 5.25166 5.28916 5.40154 5.45949 5.70014 5.77043 5.80998 5.96365 6.19281 6.39372 6.66213 6.86048 7.02316 7.09083 7.12225 7.28551 8.48966 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.039163 B = 0.003683 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.786668 B = 7600.914408 C = 7879.393575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.196 3.804 3 H 0.074 0.926 4 N -0.743 5.743 5 C 0.115 3.885 6 C -0.171 4.171 7 C -0.143 4.143 8 C 0.036 3.964 9 C -0.508 4.508 10 H 0.067 0.933 11 C 0.033 3.967 12 N -0.842 5.842 13 Si 0.975 3.025 14 H -0.263 1.263 15 H -0.270 1.270 16 H -0.263 1.263 17 C -0.196 4.196 18 C -0.165 4.165 19 C -0.047 4.047 20 C -0.168 4.168 21 C 0.093 3.907 22 N -0.513 5.513 23 C 0.093 3.907 24 C -0.171 4.171 25 H 0.050 0.950 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.395 0.605 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.282 0.718 32 H 0.095 0.905 33 H 0.117 0.883 34 H 0.146 0.854 35 H 0.178 0.822 36 H 0.179 0.821 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.339 -7.235 -12.989 15.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.090 3.910 3 H 0.092 0.908 4 N -0.379 5.379 5 C 0.016 3.984 6 C -0.193 4.193 7 C -0.163 4.163 8 C 0.034 3.966 9 C -0.539 4.539 10 H 0.085 0.915 11 C -0.179 4.179 12 N -0.470 5.470 13 Si 0.797 3.203 14 H -0.188 1.188 15 H -0.195 1.195 16 H -0.188 1.188 17 C -0.216 4.216 18 C -0.187 4.187 19 C -0.056 4.056 20 C -0.188 4.188 21 C -0.063 4.063 22 N -0.222 5.222 23 C -0.063 4.063 24 C -0.191 4.191 25 H 0.069 0.931 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.231 0.769 29 H 0.126 0.874 30 H 0.117 0.883 31 H 0.092 0.908 32 H 0.114 0.886 33 H 0.135 0.865 34 H 0.163 0.837 35 H 0.195 0.805 36 H 0.196 0.804 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.023 -7.299 -13.931 16.015 hybrid contribution -0.167 0.784 1.648 1.833 sum -3.190 -6.514 -12.282 14.264 Atomic orbital electron populations 1.22204 0.94405 1.02649 1.02164 1.19574 0.94079 0.95611 0.81762 0.90848 1.43983 1.76417 1.11530 1.05968 1.17380 1.03077 0.91334 0.86623 1.20269 1.07993 0.93351 0.97726 1.20871 1.02613 0.99327 0.93459 1.17811 0.92580 0.92261 0.93980 1.19584 1.47400 0.93241 0.93724 0.91492 1.26580 0.91737 0.98950 1.00629 1.69904 1.34905 1.11785 1.30408 0.85362 0.79711 0.76999 0.78216 1.18760 1.19467 1.18765 1.20753 1.07993 0.95561 0.97307 1.20092 1.07231 0.98999 0.92381 1.20518 0.95218 0.94646 0.95170 1.22112 1.01691 0.94573 1.00460 1.23141 0.93459 1.01460 0.88226 1.67715 1.15801 1.08848 1.29863 1.23147 0.94931 0.90059 0.98145 1.22266 1.00296 1.02482 0.94027 0.93099 0.90695 0.91855 0.76900 0.87390 0.88337 0.90779 0.88646 0.86527 0.83654 0.80457 0.80382 0.83243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.74 9.38 71.98 0.68 -3.06 16 2 C 0.20 5.16 2.50 44.25 0.11 5.27 16 3 H 0.07 2.14 6.36 -2.39 -0.02 2.13 16 4 N -0.74 -22.98 5.18 -322.07 -1.67 -24.65 16 5 C 0.11 4.68 6.65 38.67 0.26 4.94 16 6 C -0.17 -7.75 8.73 22.15 0.19 -7.56 16 7 C -0.14 -7.57 8.63 22.48 0.19 -7.38 16 8 C 0.04 2.02 5.57 -21.27 -0.12 1.90 16 9 C -0.51 -28.50 9.03 23.38 0.21 -28.29 16 10 H 0.07 3.64 7.90 -2.91 -0.02 3.62 16 11 C 0.03 1.73 5.15 85.23 0.44 2.17 16 12 N -0.84 -45.74 10.96 21.82 0.24 -45.50 16 13 Si 0.98 39.98 29.59 68.60 2.03 42.01 16 14 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 15 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 16 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 17 C -0.20 -9.71 9.74 22.48 0.22 -9.49 16 18 C -0.16 -7.06 9.82 22.15 0.22 -6.84 16 19 C -0.05 -1.06 4.98 -19.66 -0.10 -1.16 16 20 C -0.17 -3.39 9.16 22.36 0.20 -3.18 16 21 C 0.09 1.82 11.18 84.68 0.95 2.77 16 22 N -0.51 -11.47 10.36 -195.84 -2.03 -13.50 16 23 C 0.09 1.84 11.18 84.68 0.95 2.78 16 24 C -0.17 -3.48 9.78 22.36 0.22 -3.26 16 25 H 0.05 1.44 7.63 -2.38 -0.02 1.42 16 26 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 28 H 0.40 10.61 6.93 -92.71 -0.64 9.97 16 29 H 0.11 4.36 6.03 -2.91 -0.02 4.35 16 30 H 0.10 5.53 6.19 -2.91 -0.02 5.51 16 31 H 0.28 13.98 8.30 -92.70 -0.77 13.21 16 32 H 0.10 4.50 8.06 -2.91 -0.02 4.48 16 33 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 34 H 0.15 2.48 7.00 -2.91 -0.02 2.46 16 35 H 0.18 2.42 8.06 -2.91 -0.02 2.39 16 36 H 0.18 2.45 8.06 -2.91 -0.02 2.42 16 37 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -63.49 311.79 3.63 -59.86 By element: Atomic # 1 Polarization: 31.73 SS G_CDS: 0.44 Total: 32.17 kcal Atomic # 6 Polarization: -55.02 SS G_CDS: 4.62 Total: -50.40 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -3.46 Total: -83.64 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.01 kcal Total: -63.49 3.63 -59.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037071431.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.068 kcal (2) G-P(sol) polarization free energy of solvation -63.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds