Wall clock time and date at job start Mon Mar 30 2020 06:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47013 * 2 1 4 4 N 1.46500 * 109.47207 * 240.00192 * 2 1 3 5 5 C 1.38844 * 120.00197 * 84.99570 * 4 2 1 6 6 C 1.39567 * 119.84190 * 179.97438 * 5 4 2 7 7 C 1.36346 * 120.16049 * 179.97438 * 6 5 4 8 8 C 1.40875 * 119.83881 * 0.02562 * 7 6 5 9 9 C 1.41134 * 120.15959 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00502 * 155.06309 * 9 8 7 11 11 C 1.39873 * 119.99912 * 335.06300 * 9 8 7 12 12 N 1.30903 * 119.99802 * 342.16146 * 11 9 8 13 13 Si 1.86801 * 119.99826 * 162.15737 * 11 9 8 14 14 H 1.48501 * 109.47104 * 94.65864 * 13 11 9 15 15 H 1.48503 * 109.46827 * 214.65152 * 13 11 9 16 16 H 1.48497 * 109.47364 * 334.65229 * 13 11 9 17 17 C 1.40891 * 119.68888 * 359.97438 * 8 7 6 18 18 C 1.36335 * 119.83847 * 0.02562 * 17 8 7 19 19 C 1.50695 * 109.47120 * 119.99712 * 2 1 3 20 20 C 1.38682 * 120.41963 * 259.72254 * 19 2 1 21 21 C 1.38631 * 118.41496 * 179.78303 * 20 19 2 22 22 C 1.38220 * 119.16359 * 0.51277 * 21 20 19 23 23 N 1.31851 * 120.76840 * 359.72464 * 22 21 20 24 24 C 1.31883 * 121.72155 * 0.02562 * 23 22 21 25 25 H 1.08997 * 109.47367 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46929 * 300.00138 * 1 2 3 27 27 H 1.08997 * 109.47430 * 60.00062 * 1 2 3 28 28 H 0.97004 * 119.99115 * 265.00465 * 4 2 1 29 29 H 1.08002 * 119.92244 * 359.73000 * 6 5 4 30 30 H 1.08007 * 120.07793 * 180.02562 * 7 6 5 31 31 H 0.96997 * 119.99782 * 179.97438 * 12 11 9 32 32 H 1.08003 * 120.08159 * 180.02562 * 17 8 7 33 33 H 1.07991 * 119.92401 * 179.97438 * 18 17 8 34 34 H 1.07998 * 120.78947 * 0.02562 * 20 19 2 35 35 H 1.08005 * 120.41142 * 180.21658 * 21 20 19 36 36 H 1.08009 * 119.61714 * 179.70214 * 22 21 20 37 37 H 1.08001 * 119.61880 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1509 0.0021 -2.3922 6 6 2.6170 -0.6590 -3.5296 7 6 2.7492 0.0147 -4.7076 8 6 2.4145 1.3815 -4.7748 9 6 2.5482 2.0853 -5.9908 10 1 1.9492 2.9651 -6.1742 11 6 3.4564 1.6434 -6.9584 12 7 4.4154 0.8164 -6.6267 13 14 3.3007 2.2333 -8.7240 14 1 4.1833 3.4092 -8.9326 15 1 3.7031 1.1423 -9.6476 16 1 1.8921 2.6172 -8.9953 17 6 1.9446 2.0423 -3.6226 18 6 1.8174 1.3561 -2.4514 19 6 2.0323 -0.7103 1.2305 20 6 2.4676 0.0134 2.3305 21 6 2.9169 -0.6825 3.4421 22 6 2.9263 -2.0644 3.4133 23 7 2.5096 -2.7196 2.3478 24 6 2.0709 -2.0909 1.2746 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 2.2490 -1.6318 -1.1525 29 1 2.8773 -1.7058 -3.4756 30 1 3.1096 -0.4983 -5.5871 31 1 5.0450 0.5097 -7.2977 32 1 1.6858 3.0899 -3.6670 33 1 1.4578 1.8613 -1.5673 34 1 2.4530 1.0932 2.3228 35 1 3.2599 -0.1514 4.3178 36 1 3.2795 -2.6138 4.2735 37 1 1.7379 -2.6617 0.4204 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037071432.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:55 Heat of formation + Delta-G solvation = 56.249385 kcal Electronic energy + Delta-G solvation = -19022.257774 eV Core-core repulsion = 16149.876260 eV Total energy + Delta-G solvation = -2872.381515 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.38437 -38.10377 -35.96679 -33.55020 -32.44530 -31.37837 -29.84172 -29.00846 -28.11368 -24.78161 -24.03067 -23.41112 -21.77535 -20.59601 -19.83188 -17.44141 -17.17341 -16.65164 -15.90888 -15.42626 -14.98065 -14.53613 -14.25424 -13.82522 -13.48829 -13.28863 -13.16830 -12.72672 -12.53519 -12.43424 -12.02031 -11.73706 -11.58448 -11.23174 -11.18085 -10.96524 -10.84705 -10.46439 -9.91081 -9.70215 -9.51771 -9.32356 -9.26983 -9.04566 -8.58080 -7.50318 -6.65687 -6.42018 -4.04663 1.00026 1.17227 2.90385 3.08891 3.14704 3.19545 3.33962 3.69961 4.04907 4.19869 4.30536 4.69846 4.74008 4.76010 4.89370 4.99359 5.33694 5.40804 5.52712 5.65012 5.81273 5.82666 5.94487 6.03301 6.18757 6.24371 6.29706 6.41888 6.58142 6.84693 7.04112 7.18508 7.29959 7.56964 7.65005 7.77741 7.86296 8.14083 8.32426 8.45597 8.63228 8.77896 9.05146 9.13766 10.36428 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.043553 B = 0.003559 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.744661 B = 7865.485034 C = 8086.788492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.202 3.798 3 H 0.082 0.918 4 N -0.755 5.755 5 C 0.091 3.909 6 C -0.161 4.161 7 C -0.123 4.123 8 C 0.076 3.924 9 C -0.467 4.467 10 H 0.072 0.928 11 C 0.075 3.925 12 N -0.807 5.807 13 Si 0.902 3.098 14 H -0.273 1.273 15 H -0.278 1.278 16 H -0.263 1.263 17 C -0.190 4.190 18 C -0.159 4.159 19 C -0.129 4.129 20 C -0.070 4.070 21 C -0.171 4.171 22 C 0.088 3.912 23 N -0.484 5.484 24 C 0.105 3.895 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.384 0.616 29 H 0.087 0.913 30 H 0.118 0.882 31 H 0.276 0.724 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.153 0.847 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.443 -2.741 14.619 15.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.095 3.905 3 H 0.100 0.900 4 N -0.390 5.390 5 C -0.005 4.005 6 C -0.183 4.183 7 C -0.143 4.143 8 C 0.074 3.926 9 C -0.498 4.498 10 H 0.091 0.909 11 C -0.140 4.140 12 N -0.434 5.434 13 Si 0.727 3.273 14 H -0.199 1.199 15 H -0.203 1.203 16 H -0.187 1.187 17 C -0.210 4.210 18 C -0.181 4.181 19 C -0.131 4.131 20 C -0.096 4.096 21 C -0.191 4.191 22 C -0.069 4.069 23 N -0.192 5.192 24 C -0.052 4.052 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.218 0.782 29 H 0.105 0.895 30 H 0.136 0.864 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.170 0.830 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.275 -3.617 14.591 15.386 hybrid contribution 0.213 0.868 -0.753 1.169 sum -3.062 -2.749 13.838 14.437 Atomic orbital electron populations 1.22298 0.95696 1.02125 1.01992 1.19410 0.93162 0.96017 0.81921 0.89980 1.43982 1.77310 1.11060 1.06682 1.17301 1.05747 0.91930 0.85520 1.20040 1.07074 0.97926 0.93239 1.20912 1.02665 0.94373 0.96319 1.17492 0.91507 0.91566 0.92082 1.19372 1.19624 1.11233 0.99613 0.90944 1.25801 0.93693 0.94032 1.00524 1.69854 1.10978 1.27471 1.35120 0.86413 0.79616 0.78946 0.82336 1.19863 1.20276 1.18659 1.20558 1.09842 0.97808 0.92777 1.19875 1.08084 0.92710 0.97435 1.21203 0.99460 0.95531 0.96930 1.21503 0.95028 1.00705 0.92367 1.22118 1.01686 0.95884 0.99427 1.22742 0.96089 0.91817 0.96288 1.67692 1.09926 1.41257 1.00319 1.22551 0.95256 0.91533 0.95838 0.92678 0.92800 0.91185 0.78230 0.89525 0.86378 0.91312 0.89129 0.89368 0.84694 0.84831 0.82974 0.82956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.39 37.16 0.35 -1.74 16 2 C 0.20 2.84 2.48 -69.08 -0.17 2.67 16 3 H 0.08 1.21 6.34 -51.93 -0.33 0.88 16 4 N -0.75 -12.69 5.17 -53.16 -0.27 -12.96 16 5 C 0.09 1.94 6.65 -83.69 -0.56 1.38 16 6 C -0.16 -3.72 9.82 -39.77 -0.39 -4.11 16 7 C -0.12 -3.19 8.63 -39.27 -0.34 -3.53 16 8 C 0.08 2.05 5.57 -106.80 -0.59 1.45 16 9 C -0.47 -12.64 9.03 -37.87 -0.34 -12.99 16 10 H 0.07 1.89 7.91 -52.49 -0.41 1.48 16 11 C 0.07 1.93 5.13 -17.34 -0.09 1.84 16 12 N -0.81 -21.41 10.98 55.54 0.61 -20.80 16 13 Si 0.90 19.17 29.60 -169.99 -5.03 14.14 16 14 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 15 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 16 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 17 C -0.19 -4.63 9.74 -39.26 -0.38 -5.01 16 18 C -0.16 -3.47 8.74 -39.77 -0.35 -3.82 16 19 C -0.13 -1.62 4.97 -104.48 -0.52 -2.14 16 20 C -0.07 -0.76 9.82 -39.27 -0.39 -1.14 16 21 C -0.17 -1.64 10.11 -39.44 -0.40 -2.04 16 22 C 0.09 0.93 11.18 -17.55 -0.20 0.73 16 23 N -0.48 -6.33 10.36 -13.25 -0.14 -6.46 16 24 C 0.11 1.36 10.23 -17.55 -0.18 1.18 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 1.01 7.66 -51.93 -0.40 0.62 16 28 H 0.38 5.97 6.89 -40.82 -0.28 5.69 16 29 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 30 H 0.12 3.20 6.18 -52.48 -0.32 2.87 16 31 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 32 H 0.09 2.09 8.06 -52.48 -0.42 1.67 16 33 H 0.09 1.69 6.04 -52.49 -0.32 1.37 16 34 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 36 H 0.15 1.17 8.06 -52.48 -0.42 0.74 16 37 H 0.15 1.83 6.92 -52.49 -0.36 1.47 16 LS Contribution 311.73 15.07 4.70 4.70 Total: -1.00 -29.05 311.73 -9.20 -38.25 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -4.52 Total: 10.39 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: -4.54 Total: -27.26 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.20 Total: -40.22 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.05 -9.20 -38.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037071432.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.502 kcal (2) G-P(sol) polarization free energy of solvation -29.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds