Wall clock time and date at job start Mon Mar 30 2020 06:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47013 * 2 1 4 4 N 1.46500 * 109.47207 * 240.00192 * 2 1 3 5 5 C 1.38844 * 120.00197 * 84.99570 * 4 2 1 6 6 C 1.39567 * 119.84190 * 179.97438 * 5 4 2 7 7 C 1.36346 * 120.16049 * 179.97438 * 6 5 4 8 8 C 1.40875 * 119.83881 * 0.02562 * 7 6 5 9 9 C 1.41134 * 120.15959 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00502 * 155.06309 * 9 8 7 11 11 C 1.39873 * 119.99912 * 335.06300 * 9 8 7 12 12 N 1.30903 * 119.99802 * 342.16146 * 11 9 8 13 13 Si 1.86801 * 119.99826 * 162.15737 * 11 9 8 14 14 H 1.48501 * 109.47104 * 94.65864 * 13 11 9 15 15 H 1.48503 * 109.46827 * 214.65152 * 13 11 9 16 16 H 1.48497 * 109.47364 * 334.65229 * 13 11 9 17 17 C 1.40891 * 119.68888 * 359.97438 * 8 7 6 18 18 C 1.36335 * 119.83847 * 0.02562 * 17 8 7 19 19 C 1.50695 * 109.47120 * 119.99712 * 2 1 3 20 20 C 1.38682 * 120.41963 * 259.72254 * 19 2 1 21 21 C 1.38631 * 118.41496 * 179.78303 * 20 19 2 22 22 C 1.38220 * 119.16359 * 0.51277 * 21 20 19 23 23 N 1.31851 * 120.76840 * 359.72464 * 22 21 20 24 24 C 1.31883 * 121.72155 * 0.02562 * 23 22 21 25 25 H 1.08997 * 109.47367 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46929 * 300.00138 * 1 2 3 27 27 H 1.08997 * 109.47430 * 60.00062 * 1 2 3 28 28 H 0.97004 * 119.99115 * 265.00465 * 4 2 1 29 29 H 1.08002 * 119.92244 * 359.73000 * 6 5 4 30 30 H 1.08007 * 120.07793 * 180.02562 * 7 6 5 31 31 H 0.96997 * 119.99782 * 179.97438 * 12 11 9 32 32 H 1.08003 * 120.08159 * 180.02562 * 17 8 7 33 33 H 1.07991 * 119.92401 * 179.97438 * 18 17 8 34 34 H 1.07998 * 120.78947 * 0.02562 * 20 19 2 35 35 H 1.08005 * 120.41142 * 180.21658 * 21 20 19 36 36 H 1.08009 * 119.61714 * 179.70214 * 22 21 20 37 37 H 1.08001 * 119.61880 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1509 0.0021 -2.3922 6 6 2.6170 -0.6590 -3.5296 7 6 2.7492 0.0147 -4.7076 8 6 2.4145 1.3815 -4.7748 9 6 2.5482 2.0853 -5.9908 10 1 1.9492 2.9651 -6.1742 11 6 3.4564 1.6434 -6.9584 12 7 4.4154 0.8164 -6.6267 13 14 3.3007 2.2333 -8.7240 14 1 4.1833 3.4092 -8.9326 15 1 3.7031 1.1423 -9.6476 16 1 1.8921 2.6172 -8.9953 17 6 1.9446 2.0423 -3.6226 18 6 1.8174 1.3561 -2.4514 19 6 2.0323 -0.7103 1.2305 20 6 2.4676 0.0134 2.3305 21 6 2.9169 -0.6825 3.4421 22 6 2.9263 -2.0644 3.4133 23 7 2.5096 -2.7196 2.3478 24 6 2.0709 -2.0909 1.2746 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 2.2490 -1.6318 -1.1525 29 1 2.8773 -1.7058 -3.4756 30 1 3.1096 -0.4983 -5.5871 31 1 5.0450 0.5097 -7.2977 32 1 1.6858 3.0899 -3.6670 33 1 1.4578 1.8613 -1.5673 34 1 2.4530 1.0932 2.3228 35 1 3.2599 -0.1514 4.3178 36 1 3.2795 -2.6138 4.2735 37 1 1.7379 -2.6617 0.4204 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037071432.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:55 Heat of formation + Delta-G solvation = 40.447409 kcal Electronic energy + Delta-G solvation = -19022.943000 eV Core-core repulsion = 16149.876260 eV Total energy + Delta-G solvation = -2873.066740 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.29941 -39.76376 -37.41409 -35.26071 -33.53420 -32.63097 -31.42814 -30.42630 -29.72313 -26.40950 -25.07999 -24.43017 -23.29236 -22.29097 -21.28996 -19.13788 -18.36636 -17.84222 -17.15239 -16.95583 -16.36931 -15.85731 -15.39866 -15.16519 -14.75002 -14.70840 -14.23406 -14.13879 -13.96262 -13.81973 -13.51947 -13.33061 -13.08799 -12.74476 -12.70056 -12.54753 -12.16928 -12.12892 -11.54472 -11.19171 -11.08567 -10.74751 -10.38495 -10.34146 -9.93233 -9.38508 -8.54633 -8.17290 -6.00138 0.14637 0.33395 1.11311 1.20252 1.40615 1.53089 1.59832 2.27891 2.74938 2.85729 2.94538 3.44837 3.75956 3.86560 3.95962 4.04877 4.13494 4.37626 4.44212 4.46550 4.54768 4.62432 4.77430 4.85439 4.96403 5.03812 5.17949 5.19531 5.24349 5.31892 5.38620 5.44668 5.74618 5.75457 5.79984 5.93358 6.19899 6.41959 6.68055 6.87859 7.01671 7.09588 7.10388 7.28167 8.48892 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.043553 B = 0.003559 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.744661 B = 7865.485034 C = 8086.788492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.203 3.797 3 H 0.080 0.920 4 N -0.747 5.747 5 C 0.116 3.884 6 C -0.175 4.175 7 C -0.142 4.142 8 C 0.037 3.963 9 C -0.506 4.506 10 H 0.068 0.932 11 C 0.032 3.968 12 N -0.842 5.842 13 Si 0.975 3.025 14 H -0.265 1.265 15 H -0.269 1.269 16 H -0.261 1.261 17 C -0.197 4.197 18 C -0.162 4.162 19 C -0.141 4.141 20 C -0.074 4.074 21 C -0.162 4.162 22 C 0.081 3.919 23 N -0.510 5.510 24 C 0.090 3.910 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.052 0.948 28 H 0.391 0.609 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.282 0.718 32 H 0.096 0.904 33 H 0.120 0.880 34 H 0.155 0.845 35 H 0.169 0.831 36 H 0.180 0.820 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.652 -2.462 16.910 17.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.097 3.903 3 H 0.098 0.902 4 N -0.382 5.382 5 C 0.017 3.983 6 C -0.197 4.197 7 C -0.162 4.162 8 C 0.034 3.966 9 C -0.538 4.538 10 H 0.086 0.914 11 C -0.180 4.180 12 N -0.470 5.470 13 Si 0.797 3.203 14 H -0.190 1.190 15 H -0.194 1.194 16 H -0.185 1.185 17 C -0.217 4.217 18 C -0.184 4.184 19 C -0.143 4.143 20 C -0.100 4.100 21 C -0.182 4.182 22 C -0.076 4.076 23 N -0.219 5.219 24 C -0.066 4.066 25 H 0.075 0.925 26 H 0.095 0.905 27 H 0.071 0.929 28 H 0.226 0.774 29 H 0.122 0.878 30 H 0.116 0.884 31 H 0.092 0.908 32 H 0.115 0.885 33 H 0.137 0.863 34 H 0.173 0.827 35 H 0.186 0.814 36 H 0.197 0.803 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.499 -3.355 16.932 17.612 hybrid contribution 0.257 0.706 -1.155 1.378 sum -3.242 -2.648 15.776 16.322 Atomic orbital electron populations 1.22221 0.94630 1.02363 1.02280 1.19523 0.93863 0.95673 0.81291 0.90218 1.44083 1.76385 1.11457 1.06244 1.17375 1.02655 0.91851 0.86402 1.20225 1.07514 0.98865 0.93142 1.20830 1.04038 0.94511 0.96832 1.17804 0.93426 0.92241 0.93151 1.19601 1.20943 1.12080 1.01145 0.91396 1.26607 0.92827 0.94091 1.04482 1.69921 1.11741 1.28826 1.36561 0.85306 0.79540 0.78663 0.76814 1.19036 1.19394 1.18493 1.20777 1.09423 0.98353 0.93137 1.20136 1.07645 0.93006 0.97660 1.21033 1.00950 0.95406 0.96929 1.21831 0.94268 1.01848 0.92094 1.22487 1.00123 0.95543 1.00023 1.23319 0.95116 0.92828 0.96313 1.67698 1.10946 1.42174 1.01098 1.22571 0.96039 0.91826 0.96179 0.92524 0.90455 0.92883 0.77373 0.87819 0.88438 0.90816 0.88535 0.86253 0.82719 0.81378 0.80272 0.83184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.66 9.39 71.98 0.68 -2.99 16 2 C 0.20 5.23 2.48 44.24 0.11 5.34 16 3 H 0.08 2.12 6.34 -2.39 -0.02 2.11 16 4 N -0.75 -23.93 5.17 -322.10 -1.66 -25.60 16 5 C 0.12 4.82 6.65 38.68 0.26 5.08 16 6 C -0.18 -8.18 9.82 22.15 0.22 -7.96 16 7 C -0.14 -7.67 8.63 22.47 0.19 -7.48 16 8 C 0.04 2.03 5.57 -21.27 -0.12 1.91 16 9 C -0.51 -28.52 9.03 23.38 0.21 -28.31 16 10 H 0.07 3.70 7.91 -2.91 -0.02 3.68 16 11 C 0.03 1.68 5.13 85.23 0.44 2.12 16 12 N -0.84 -46.30 10.98 21.82 0.24 -46.06 16 13 Si 0.98 40.28 29.60 68.60 2.03 42.31 16 14 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 15 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 16 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 17 C -0.20 -9.73 9.74 22.48 0.22 -9.51 16 18 C -0.16 -6.93 8.74 22.15 0.19 -6.74 16 19 C -0.14 -3.21 4.97 -19.77 -0.10 -3.31 16 20 C -0.07 -1.36 9.82 22.47 0.22 -1.14 16 21 C -0.16 -2.47 10.11 22.36 0.23 -2.24 16 22 C 0.08 1.47 11.18 84.69 0.95 2.42 16 23 N -0.51 -12.39 10.36 -195.84 -2.03 -14.42 16 24 C 0.09 2.19 10.23 84.67 0.87 3.06 16 25 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.05 1.43 7.66 -2.39 -0.02 1.41 16 28 H 0.39 11.64 6.89 -92.71 -0.64 11.00 16 29 H 0.10 4.36 8.06 -2.91 -0.02 4.33 16 30 H 0.10 5.57 6.18 -2.91 -0.02 5.55 16 31 H 0.28 14.10 8.30 -92.71 -0.77 13.33 16 32 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 33 H 0.12 4.29 6.04 -2.92 -0.02 4.27 16 34 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 35 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 36 H 0.18 2.10 8.06 -2.91 -0.02 2.08 16 37 H 0.15 3.49 6.92 -2.91 -0.02 3.47 16 Total: -1.00 -64.77 311.73 3.58 -61.20 By element: Atomic # 1 Polarization: 31.88 SS G_CDS: 0.44 Total: 32.33 kcal Atomic # 6 Polarization: -54.31 SS G_CDS: 4.56 Total: -49.75 kcal Atomic # 7 Polarization: -82.63 SS G_CDS: -3.45 Total: -86.08 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.31 kcal Total: -64.77 3.58 -61.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037071432.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.643 kcal (2) G-P(sol) polarization free energy of solvation -64.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds