Wall clock time and date at job start Mon Mar 30 2020 06:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46890 * 2 1 4 4 N 1.46501 * 109.46874 * 119.99513 * 2 1 3 5 5 C 1.38863 * 119.99996 * 275.27406 * 4 2 1 6 6 C 1.39562 * 119.84117 * 359.45958 * 5 4 2 7 7 C 1.36338 * 120.16007 * 179.71686 * 6 5 4 8 8 C 1.40892 * 119.83609 * 0.54988 * 7 6 5 9 9 C 1.41132 * 120.15481 * 179.70293 * 8 7 6 10 10 H 1.08005 * 119.99471 * 204.62988 * 9 8 7 11 11 C 1.39860 * 120.00294 * 24.62511 * 9 8 7 12 12 N 1.30905 * 119.99899 * 17.95908 * 11 9 8 13 13 Si 1.86804 * 120.00112 * 197.95617 * 11 9 8 14 14 H 1.48498 * 109.47220 * 59.99776 * 13 11 9 15 15 H 1.48503 * 109.47334 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.46938 * 300.00195 * 13 11 9 17 17 C 1.40888 * 119.68466 * 359.71935 * 8 7 6 18 18 C 1.36333 * 119.83748 * 0.02562 * 17 8 7 19 19 C 1.50693 * 109.47458 * 239.99607 * 2 1 3 20 20 C 1.38674 * 120.42035 * 99.99973 * 19 2 1 21 21 C 1.38624 * 118.42128 * 180.02562 * 20 19 2 22 22 C 1.38221 * 119.16236 * 359.97438 * 21 20 19 23 23 N 1.31854 * 120.76359 * 0.02562 * 22 21 20 24 24 C 1.31881 * 121.72367 * 359.69923 * 23 22 21 25 25 H 1.08999 * 109.47028 * 60.00668 * 1 2 3 26 26 H 1.09002 * 109.46890 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47261 * 300.00455 * 1 2 3 28 28 H 0.97001 * 120.00270 * 95.00512 * 4 2 1 29 29 H 1.08001 * 119.92084 * 359.96904 * 6 5 4 30 30 H 1.08001 * 120.08348 * 180.26919 * 7 6 5 31 31 H 0.97004 * 119.99851 * 180.02562 * 12 11 9 32 32 H 1.08004 * 120.07606 * 179.97438 * 17 8 7 33 33 H 1.08004 * 119.91980 * 179.97438 * 18 17 8 34 34 H 1.08002 * 120.78666 * 359.97438 * 20 19 2 35 35 H 1.08001 * 120.42037 * 180.02562 * 21 20 19 36 36 H 1.08003 * 119.61942 * 179.97438 * 22 21 20 37 37 H 1.08012 * 119.61629 * 180.31497 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1455 0.0009 2.3938 6 6 1.8179 1.3563 2.4512 7 6 1.9349 2.0401 3.6249 8 6 2.3987 1.3779 4.7788 9 6 2.5283 2.0808 5.9958 10 1 3.2228 1.7355 6.7474 11 6 1.7574 3.2243 6.2284 12 7 0.6880 3.4505 5.5082 13 14 2.2539 4.4290 7.5670 14 1 3.6085 4.9628 7.2751 15 1 1.2792 5.5485 7.6119 16 1 2.2683 3.7330 8.8788 17 6 2.7328 0.0109 4.7118 18 6 2.6059 -0.6615 3.5326 19 6 2.0324 -0.7104 -1.2303 20 6 2.4623 0.0130 -2.3326 21 6 2.9157 -0.6828 -3.4425 22 6 2.9248 -2.0647 -3.4137 23 7 2.5085 -2.7198 -2.3478 24 6 2.0756 -2.0909 -1.2725 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 2.2491 -1.6317 1.1528 29 1 1.4671 1.8638 1.5648 30 1 1.6769 3.0880 3.6690 31 1 0.1536 4.2438 5.6693 32 1 3.0894 -0.5029 5.5924 33 1 2.8621 -1.7094 3.4797 34 1 2.4434 1.0928 -2.3267 35 1 3.2584 -0.1519 -4.3183 36 1 3.2762 -2.6142 -4.2745 37 1 1.7472 -2.6616 -0.4163 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037071433.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:59 Heat of formation + Delta-G solvation = 56.288802 kcal Electronic energy + Delta-G solvation = -19065.083085 eV Core-core repulsion = 16192.703280 eV Total energy + Delta-G solvation = -2872.379805 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.38274 -38.09987 -35.95375 -33.57117 -32.44522 -31.35654 -29.69152 -29.22458 -28.02430 -24.77541 -24.01510 -23.41143 -21.70535 -20.79792 -19.66049 -17.41466 -17.22237 -16.66044 -15.99774 -15.29152 -14.94808 -14.58059 -14.24661 -13.82306 -13.48062 -13.27319 -13.16379 -12.71514 -12.53023 -12.43390 -11.96981 -11.80664 -11.47098 -11.38245 -11.03250 -11.01061 -10.79224 -10.48561 -9.90597 -9.71887 -9.52407 -9.31917 -9.26015 -9.05303 -8.56468 -7.50673 -6.65852 -6.42150 -4.04690 1.00160 1.17339 2.91975 3.09012 3.13590 3.16978 3.34816 3.70030 4.04556 4.20299 4.30639 4.70334 4.74318 4.76441 4.90042 4.99703 5.35476 5.41750 5.55903 5.66330 5.82663 5.85094 5.95766 6.05675 6.20556 6.25921 6.32005 6.46460 6.58492 6.91094 6.92337 7.18713 7.34372 7.53324 7.67376 7.81788 7.85978 8.13738 8.27047 8.46650 8.65536 8.77465 9.04977 9.13679 10.36123 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.041280 B = 0.003659 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.125711 B = 7650.457591 C = 7904.584659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.203 3.797 3 H 0.083 0.917 4 N -0.755 5.755 5 C 0.091 3.909 6 C -0.163 4.163 7 C -0.125 4.125 8 C 0.076 3.924 9 C -0.468 4.468 10 H 0.072 0.928 11 C 0.075 3.925 12 N -0.807 5.807 13 Si 0.903 3.097 14 H -0.266 1.266 15 H -0.281 1.281 16 H -0.268 1.268 17 C -0.187 4.187 18 C -0.156 4.156 19 C -0.128 4.128 20 C -0.070 4.070 21 C -0.171 4.171 22 C 0.087 3.913 23 N -0.484 5.484 24 C 0.105 3.895 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.383 0.617 29 H 0.089 0.911 30 H 0.118 0.882 31 H 0.277 0.723 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.153 0.847 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.042 -4.266 -14.203 14.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.095 3.905 3 H 0.101 0.899 4 N -0.391 5.391 5 C -0.005 4.005 6 C -0.185 4.185 7 C -0.145 4.145 8 C 0.073 3.927 9 C -0.499 4.499 10 H 0.090 0.910 11 C -0.140 4.140 12 N -0.434 5.434 13 Si 0.728 3.272 14 H -0.191 1.191 15 H -0.206 1.206 16 H -0.193 1.193 17 C -0.207 4.207 18 C -0.178 4.178 19 C -0.130 4.130 20 C -0.096 4.096 21 C -0.191 4.191 22 C -0.070 4.070 23 N -0.192 5.192 24 C -0.052 4.052 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.217 0.783 29 H 0.107 0.893 30 H 0.136 0.864 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.170 0.830 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.798 -4.855 -14.297 15.120 hybrid contribution 0.157 1.184 0.578 1.327 sum 0.954 -3.672 -13.719 14.234 Atomic orbital electron populations 1.22306 0.95621 1.02105 1.02164 1.19415 0.93219 0.96010 0.81845 0.89918 1.43974 1.77382 1.11084 1.06618 1.17299 1.05829 0.92010 0.85379 1.20104 1.07884 0.92649 0.97883 1.20934 1.02808 0.99759 0.91019 1.17493 0.91649 0.90510 0.93031 1.19347 1.20576 1.08264 1.01695 0.90977 1.25789 0.93427 0.97984 0.96808 1.69847 1.10966 1.25388 1.37220 0.86465 0.79360 0.79899 0.81472 1.19087 1.20582 1.19267 1.20544 1.09734 0.94599 0.95858 1.19803 1.07495 0.97563 0.92984 1.21202 0.99356 0.95519 0.96938 1.21505 0.95014 1.00735 0.92366 1.22115 1.01666 0.95880 0.99437 1.22738 0.96125 0.91816 0.96303 1.67689 1.09982 1.41259 1.00285 1.22547 0.95306 0.91536 0.95833 0.92788 0.92725 0.91017 0.78319 0.89313 0.86398 0.91268 0.89056 0.89594 0.84673 0.84836 0.82987 0.82968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.39 37.16 0.35 -1.88 16 2 C 0.20 2.91 2.48 -69.08 -0.17 2.74 16 3 H 0.08 1.25 6.33 -51.93 -0.33 0.92 16 4 N -0.75 -12.68 5.17 -53.16 -0.27 -12.96 16 5 C 0.09 1.93 6.65 -83.69 -0.56 1.37 16 6 C -0.16 -3.71 8.74 -39.77 -0.35 -4.05 16 7 C -0.13 -3.23 8.64 -39.26 -0.34 -3.57 16 8 C 0.08 2.04 5.57 -106.79 -0.60 1.44 16 9 C -0.47 -12.65 9.03 -37.88 -0.34 -12.99 16 10 H 0.07 1.89 7.91 -52.48 -0.41 1.47 16 11 C 0.08 1.93 5.13 -17.34 -0.09 1.84 16 12 N -0.81 -21.23 10.96 55.54 0.61 -20.62 16 13 Si 0.90 19.14 29.60 -169.99 -5.03 14.10 16 14 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 15 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 16 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 17 C -0.19 -4.61 9.74 -39.27 -0.38 -4.99 16 18 C -0.16 -3.47 9.82 -39.77 -0.39 -3.86 16 19 C -0.13 -1.62 4.97 -104.49 -0.52 -2.14 16 20 C -0.07 -0.76 9.82 -39.28 -0.39 -1.15 16 21 C -0.17 -1.64 10.11 -39.45 -0.40 -2.03 16 22 C 0.09 0.92 11.18 -17.55 -0.20 0.72 16 23 N -0.48 -6.28 10.36 -13.25 -0.14 -6.42 16 24 C 0.10 1.35 10.23 -17.55 -0.18 1.17 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 1.13 7.68 -51.93 -0.40 0.74 16 28 H 0.38 5.86 6.88 -40.82 -0.28 5.58 16 29 H 0.09 1.81 6.06 -52.49 -0.32 1.49 16 30 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 31 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 32 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16 33 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 34 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.15 1.15 8.06 -52.48 -0.42 0.73 16 37 H 0.15 1.82 6.91 -52.48 -0.36 1.46 16 LS Contribution 311.72 15.07 4.70 4.70 Total: -1.00 -28.85 311.72 -9.20 -38.05 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -4.52 Total: 10.52 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: -4.54 Total: -27.38 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.20 Total: -40.00 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.85 -9.20 -38.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037071433.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.344 kcal (2) G-P(sol) polarization free energy of solvation -28.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds