Wall clock time and date at job start Mon Mar 30 2020 06:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46890 * 2 1 4 4 N 1.46501 * 109.46874 * 119.99513 * 2 1 3 5 5 C 1.38863 * 119.99996 * 275.27406 * 4 2 1 6 6 C 1.39562 * 119.84117 * 359.45958 * 5 4 2 7 7 C 1.36338 * 120.16007 * 179.71686 * 6 5 4 8 8 C 1.40892 * 119.83609 * 0.54988 * 7 6 5 9 9 C 1.41132 * 120.15481 * 179.70293 * 8 7 6 10 10 H 1.08005 * 119.99471 * 204.62988 * 9 8 7 11 11 C 1.39860 * 120.00294 * 24.62511 * 9 8 7 12 12 N 1.30905 * 119.99899 * 17.95908 * 11 9 8 13 13 Si 1.86804 * 120.00112 * 197.95617 * 11 9 8 14 14 H 1.48498 * 109.47220 * 59.99776 * 13 11 9 15 15 H 1.48503 * 109.47334 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.46938 * 300.00195 * 13 11 9 17 17 C 1.40888 * 119.68466 * 359.71935 * 8 7 6 18 18 C 1.36333 * 119.83748 * 0.02562 * 17 8 7 19 19 C 1.50693 * 109.47458 * 239.99607 * 2 1 3 20 20 C 1.38674 * 120.42035 * 99.99973 * 19 2 1 21 21 C 1.38624 * 118.42128 * 180.02562 * 20 19 2 22 22 C 1.38221 * 119.16236 * 359.97438 * 21 20 19 23 23 N 1.31854 * 120.76359 * 0.02562 * 22 21 20 24 24 C 1.31881 * 121.72367 * 359.69923 * 23 22 21 25 25 H 1.08999 * 109.47028 * 60.00668 * 1 2 3 26 26 H 1.09002 * 109.46890 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47261 * 300.00455 * 1 2 3 28 28 H 0.97001 * 120.00270 * 95.00512 * 4 2 1 29 29 H 1.08001 * 119.92084 * 359.96904 * 6 5 4 30 30 H 1.08001 * 120.08348 * 180.26919 * 7 6 5 31 31 H 0.97004 * 119.99851 * 180.02562 * 12 11 9 32 32 H 1.08004 * 120.07606 * 179.97438 * 17 8 7 33 33 H 1.08004 * 119.91980 * 179.97438 * 18 17 8 34 34 H 1.08002 * 120.78666 * 359.97438 * 20 19 2 35 35 H 1.08001 * 120.42037 * 180.02562 * 21 20 19 36 36 H 1.08003 * 119.61942 * 179.97438 * 22 21 20 37 37 H 1.08012 * 119.61629 * 180.31497 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1455 0.0009 2.3938 6 6 1.8179 1.3563 2.4512 7 6 1.9349 2.0401 3.6249 8 6 2.3987 1.3779 4.7788 9 6 2.5283 2.0808 5.9958 10 1 3.2228 1.7355 6.7474 11 6 1.7574 3.2243 6.2284 12 7 0.6880 3.4505 5.5082 13 14 2.2539 4.4290 7.5670 14 1 3.6085 4.9628 7.2751 15 1 1.2792 5.5485 7.6119 16 1 2.2683 3.7330 8.8788 17 6 2.7328 0.0109 4.7118 18 6 2.6059 -0.6615 3.5326 19 6 2.0324 -0.7104 -1.2303 20 6 2.4623 0.0130 -2.3326 21 6 2.9157 -0.6828 -3.4425 22 6 2.9248 -2.0647 -3.4137 23 7 2.5085 -2.7198 -2.3478 24 6 2.0756 -2.0909 -1.2725 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 2.2491 -1.6317 1.1528 29 1 1.4671 1.8638 1.5648 30 1 1.6769 3.0880 3.6690 31 1 0.1536 4.2438 5.6693 32 1 3.0894 -0.5029 5.5924 33 1 2.8621 -1.7094 3.4797 34 1 2.4434 1.0928 -2.3267 35 1 3.2584 -0.1519 -4.3183 36 1 3.2762 -2.6142 -4.2745 37 1 1.7472 -2.6616 -0.4163 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037071433.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:58 Heat of formation + Delta-G solvation = 40.704636 kcal Electronic energy + Delta-G solvation = -19065.758865 eV Core-core repulsion = 16192.703280 eV Total energy + Delta-G solvation = -2873.055585 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.30324 -39.76415 -37.41021 -35.29014 -33.52321 -32.59604 -31.40201 -30.56949 -29.64923 -26.41327 -25.07207 -24.43819 -23.26105 -22.43250 -21.15563 -19.14730 -18.45679 -17.82630 -17.22678 -16.71963 -16.47019 -15.88173 -15.39328 -15.17041 -14.74024 -14.71247 -14.26345 -14.16583 -13.96534 -13.72937 -13.54345 -13.44578 -12.96635 -12.87449 -12.72700 -12.37004 -12.25254 -12.14285 -11.57281 -11.17010 -11.08996 -10.75309 -10.38831 -10.33596 -9.93118 -9.38712 -8.54395 -8.17596 -5.99996 0.14577 0.33041 1.12523 1.20342 1.40764 1.51307 1.60795 2.28065 2.75023 2.84725 2.94863 3.44433 3.75715 3.86621 3.95590 4.04774 4.13051 4.36048 4.42924 4.50382 4.52131 4.61435 4.75527 4.84866 4.95319 5.04651 5.15217 5.18597 5.23738 5.28847 5.39110 5.46491 5.70394 5.76231 5.81826 5.97078 6.19798 6.40365 6.67195 6.86847 7.01434 7.09558 7.12370 7.29001 8.48831 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.041280 B = 0.003659 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.125711 B = 7650.457591 C = 7904.584659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.204 3.796 3 H 0.077 0.923 4 N -0.745 5.745 5 C 0.115 3.885 6 C -0.170 4.170 7 C -0.144 4.144 8 C 0.037 3.963 9 C -0.508 4.508 10 H 0.066 0.934 11 C 0.033 3.967 12 N -0.840 5.840 13 Si 0.975 3.025 14 H -0.263 1.263 15 H -0.270 1.270 16 H -0.263 1.263 17 C -0.197 4.197 18 C -0.166 4.166 19 C -0.139 4.139 20 C -0.075 4.075 21 C -0.162 4.162 22 C 0.082 3.918 23 N -0.509 5.509 24 C 0.092 3.908 25 H 0.075 0.925 26 H 0.058 0.942 27 H 0.046 0.954 28 H 0.393 0.607 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.282 0.718 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.153 0.847 35 H 0.169 0.831 36 H 0.181 0.819 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.492 -4.528 -16.374 17.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.097 3.903 3 H 0.095 0.905 4 N -0.381 5.381 5 C 0.016 3.984 6 C -0.192 4.192 7 C -0.164 4.164 8 C 0.034 3.966 9 C -0.539 4.539 10 H 0.085 0.915 11 C -0.179 4.179 12 N -0.468 5.468 13 Si 0.797 3.203 14 H -0.188 1.188 15 H -0.194 1.194 16 H -0.188 1.188 17 C -0.217 4.217 18 C -0.188 4.188 19 C -0.142 4.142 20 C -0.101 4.101 21 C -0.181 4.181 22 C -0.075 4.075 23 N -0.218 5.218 24 C -0.065 4.065 25 H 0.094 0.906 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.229 0.771 29 H 0.127 0.873 30 H 0.118 0.882 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.133 0.867 34 H 0.170 0.830 35 H 0.186 0.814 36 H 0.198 0.802 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.242 -5.152 -16.507 17.337 hybrid contribution 0.030 1.109 0.999 1.493 sum 1.272 -4.043 -15.509 16.077 Atomic orbital electron populations 1.22225 0.95039 1.02324 1.01995 1.19475 0.93572 0.95654 0.81586 0.90526 1.44039 1.76430 1.11552 1.06035 1.17381 1.02841 0.91557 0.86644 1.20263 1.07842 0.93445 0.97651 1.20877 1.04117 0.99273 0.92098 1.17809 0.93491 0.91729 0.93577 1.19574 1.21837 1.10264 1.02262 0.91543 1.26581 0.92924 0.99159 0.99218 1.69910 1.11797 1.26119 1.38944 0.85367 0.79045 0.77523 0.78377 1.18792 1.19405 1.18782 1.20734 1.09699 0.94186 0.97110 1.20089 1.07299 0.98941 0.92474 1.20989 1.00975 0.95466 0.96763 1.21814 0.94354 1.01783 0.92172 1.22479 1.00107 0.95589 0.99958 1.23324 0.95038 0.92756 0.96353 1.67706 1.10959 1.42089 1.01019 1.22570 0.95982 0.91688 0.96226 0.90586 0.92320 0.93503 0.77144 0.87273 0.88235 0.90743 0.88729 0.86732 0.82955 0.81398 0.80182 0.83040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.06 9.39 71.98 0.68 -3.38 16 2 C 0.20 5.49 2.48 44.24 0.11 5.60 16 3 H 0.08 2.18 6.33 -2.39 -0.02 2.17 16 4 N -0.75 -23.89 5.17 -322.09 -1.66 -25.55 16 5 C 0.11 4.77 6.65 38.67 0.26 5.02 16 6 C -0.17 -7.75 8.74 22.15 0.19 -7.56 16 7 C -0.14 -7.66 8.64 22.48 0.19 -7.46 16 8 C 0.04 2.04 5.57 -21.27 -0.12 1.93 16 9 C -0.51 -28.65 9.03 23.37 0.21 -28.44 16 10 H 0.07 3.64 7.91 -2.91 -0.02 3.62 16 11 C 0.03 1.75 5.13 85.22 0.44 2.19 16 12 N -0.84 -45.62 10.96 21.81 0.24 -45.38 16 13 Si 0.98 40.09 29.60 68.60 2.03 42.12 16 14 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 15 H -0.27 -10.46 7.11 99.48 0.71 -9.76 16 16 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 17 C -0.20 -9.91 9.74 22.47 0.22 -9.69 16 18 C -0.17 -7.27 9.82 22.15 0.22 -7.05 16 19 C -0.14 -3.22 4.97 -19.78 -0.10 -3.32 16 20 C -0.07 -1.40 9.82 22.47 0.22 -1.18 16 21 C -0.16 -2.47 10.11 22.36 0.23 -2.24 16 22 C 0.08 1.46 11.18 84.69 0.95 2.41 16 23 N -0.51 -12.12 10.36 -195.84 -2.03 -14.15 16 24 C 0.09 2.20 10.23 84.67 0.87 3.07 16 25 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.05 1.44 7.68 -2.39 -0.02 1.42 16 28 H 0.39 11.30 6.88 -92.71 -0.64 10.66 16 29 H 0.11 4.42 6.06 -2.91 -0.02 4.40 16 30 H 0.10 5.59 6.16 -2.91 -0.02 5.57 16 31 H 0.28 13.98 8.30 -92.71 -0.77 13.21 16 32 H 0.09 4.54 8.06 -2.91 -0.02 4.51 16 33 H 0.11 4.29 8.06 -2.91 -0.02 4.27 16 34 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 35 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 36 H 0.18 2.03 8.06 -2.91 -0.02 2.01 16 37 H 0.15 3.44 6.91 -2.90 -0.02 3.42 16 Total: -1.00 -64.21 311.72 3.58 -60.63 By element: Atomic # 1 Polarization: 32.00 SS G_CDS: 0.45 Total: 32.44 kcal Atomic # 6 Polarization: -54.66 SS G_CDS: 4.56 Total: -50.10 kcal Atomic # 7 Polarization: -81.64 SS G_CDS: -3.45 Total: -85.09 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.12 kcal Total: -64.21 3.58 -60.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037071433.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.337 kcal (2) G-P(sol) polarization free energy of solvation -64.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds