Wall clock time and date at job start Mon Mar 30 2020 06:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47238 * 2 1 4 4 H 1.09002 * 109.46866 * 185.14536 * 3 2 1 5 5 C 1.50695 * 109.47021 * 305.14467 * 3 2 1 6 6 H 1.08003 * 119.99741 * 120.00131 * 5 3 2 7 7 C 1.37871 * 120.00398 * 299.99979 * 5 3 2 8 8 N 1.31518 * 119.99825 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00551 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.46830 * 59.99964 * 9 7 5 11 11 H 1.48498 * 109.47552 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47032 * 300.00304 * 9 7 5 13 13 N 1.46905 * 109.47006 * 65.14700 * 3 2 1 14 14 C 1.46899 * 110.99676 * 85.94666 * 13 3 2 15 15 H 1.08996 * 109.47819 * 326.33754 * 14 13 3 16 16 C 1.53002 * 109.46740 * 86.34341 * 14 13 3 17 17 C 1.50706 * 109.46777 * 206.33601 * 14 13 3 18 18 S 1.76199 * 126.03926 * 314.69758 * 17 14 13 19 19 C 1.70975 * 90.28155 * 179.97438 * 18 17 14 20 20 C 1.50700 * 124.91258 * 180.02562 * 19 18 17 21 21 N 1.29027 * 110.16614 * 0.34486 * 19 18 17 22 22 C 1.31782 * 117.12716 * 359.72764 * 21 19 18 23 23 C 1.50693 * 122.75049 * 180.02562 * 22 21 19 24 24 H 1.08998 * 109.47287 * 174.60358 * 1 2 3 25 25 H 1.09004 * 109.46600 * 54.60478 * 1 2 3 26 26 H 1.08996 * 109.47209 * 294.60445 * 1 2 3 27 27 H 1.09001 * 109.47099 * 119.99968 * 2 1 3 28 28 H 1.09006 * 109.47291 * 239.99685 * 2 1 3 29 29 H 0.97004 * 120.00002 * 180.02562 * 8 7 5 30 30 H 1.00899 * 110.99535 * 321.99653 * 13 3 2 31 31 H 1.08998 * 109.47170 * 59.99640 * 16 14 13 32 32 H 1.08998 * 109.46865 * 179.97438 * 16 14 13 33 33 H 1.08995 * 109.46784 * 299.99176 * 16 14 13 34 34 H 1.08998 * 109.47360 * 270.33704 * 20 19 18 35 35 H 1.08996 * 109.47403 * 30.34079 * 20 19 18 36 36 H 1.08999 * 109.46849 * 150.34381 * 20 19 18 37 37 H 1.09001 * 109.46993 * 270.00046 * 23 22 21 38 38 H 1.09002 * 109.47260 * 29.99067 * 23 22 21 39 39 H 1.08999 * 109.47124 * 149.99981 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1262 1.4438 -0.0922 5 6 1.4364 2.1887 -1.1618 6 1 0.8272 3.0627 -0.9843 7 6 1.6618 1.7558 -2.4512 8 7 2.4032 0.6912 -2.6673 9 14 0.9141 2.6811 -3.8914 10 1 1.4098 4.0810 -3.8912 11 1 1.3033 2.0179 -5.1617 12 1 -0.5656 2.6799 -3.7660 13 7 1.6544 2.0982 1.2568 14 6 2.6433 1.8377 2.3114 15 1 3.0614 0.8398 2.1791 16 6 3.7643 2.8756 2.2269 17 6 1.9756 1.9280 3.6594 18 16 0.8605 3.1884 4.1816 19 6 0.7051 2.4309 5.7065 20 6 -0.1553 2.9351 6.8363 21 7 1.4363 1.3688 5.7521 22 6 2.1302 1.0701 4.6723 23 6 3.0241 -0.1401 4.5865 24 1 -0.3634 -1.0231 -0.0966 25 1 -0.3633 0.5953 -0.8378 26 1 -0.3633 0.4278 0.9343 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 2.5621 0.3868 -3.5745 30 1 0.7320 1.8099 1.5468 31 1 3.3462 3.8735 2.3593 32 1 4.4978 2.6826 3.0097 33 1 4.2472 2.8103 1.2520 34 1 0.4257 3.6141 7.4604 35 1 -1.0170 3.4637 6.4289 36 1 -0.4968 2.0921 7.4370 37 1 4.0278 0.1255 4.9182 38 1 2.6280 -0.9303 5.2243 39 1 3.0631 -0.4906 3.5552 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040518602.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:46 Heat of formation + Delta-G solvation = 26.962722 kcal Electronic energy + Delta-G solvation = -18815.605494 eV Core-core repulsion = 16077.397966 eV Total energy + Delta-G solvation = -2738.207528 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.80719 -37.06721 -34.10327 -32.29841 -31.14946 -29.23518 -28.54860 -26.91030 -25.93606 -23.37126 -22.71657 -21.54644 -19.17315 -18.64675 -17.48899 -16.24573 -15.15278 -15.06710 -14.94147 -14.50854 -13.62378 -13.40350 -13.25731 -12.94352 -12.88721 -12.76291 -12.47266 -12.21576 -12.10657 -11.95717 -11.63781 -11.37828 -11.11729 -10.93066 -10.80535 -10.67906 -10.53573 -9.97808 -9.87292 -9.60661 -9.36032 -9.05712 -8.92515 -8.36939 -8.33245 -7.31235 -5.98638 -4.00046 0.91104 1.56520 2.03652 2.93657 3.33759 3.38276 3.41487 4.19263 4.43244 4.98963 5.08330 5.17269 5.31631 5.33244 5.35848 5.47741 5.65998 5.72811 5.77382 5.86139 5.97136 6.05018 6.26845 6.32487 6.33700 6.44390 6.46132 6.54772 6.71205 6.88531 7.23989 7.25441 7.49241 7.67473 7.87086 7.92576 8.25063 8.47546 8.57656 9.04877 9.63430 11.08399 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.027648 B = 0.005163 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.474124 B = 5421.440966 C = 5671.163796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.145 4.145 3 C 0.216 3.784 4 H 0.036 0.964 5 C -0.488 4.488 6 H 0.061 0.939 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.677 5.677 14 C 0.156 3.844 15 H 0.059 0.941 16 C -0.131 4.131 17 C -0.205 4.205 18 S 0.153 5.847 19 C 0.016 3.984 20 C -0.072 4.072 21 N -0.473 5.473 22 C 0.051 3.949 23 C -0.076 4.076 24 H 0.023 0.977 25 H 0.070 0.930 26 H 0.025 0.975 27 H 0.009 0.991 28 H 0.094 0.906 29 H 0.260 0.740 30 H 0.329 0.671 31 H 0.057 0.943 32 H 0.045 0.955 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.620 2.108 14.622 14.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.185 4.185 3 C 0.108 3.892 4 H 0.054 0.946 5 C -0.527 4.527 6 H 0.079 0.921 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.309 5.309 14 C 0.044 3.956 15 H 0.077 0.923 16 C -0.189 4.189 17 C -0.327 4.327 18 S 0.409 5.591 19 C -0.261 4.261 20 C -0.132 4.132 21 N -0.188 5.188 22 C -0.081 4.081 23 C -0.136 4.136 24 H 0.042 0.958 25 H 0.089 0.911 26 H 0.044 0.956 27 H 0.028 0.972 28 H 0.112 0.888 29 H 0.069 0.931 30 H 0.147 0.853 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.722 3.227 14.338 14.797 hybrid contribution -0.055 -1.305 -0.680 1.473 sum -1.777 1.921 13.658 13.906 Atomic orbital electron populations 1.21592 0.97710 0.98747 1.00667 1.22113 0.95031 1.01110 1.00213 1.19266 0.96100 0.88552 0.85241 0.94645 1.20984 1.30617 1.11500 0.89563 0.92075 1.24896 0.95529 0.95149 0.98687 1.69869 1.38950 1.23921 1.20810 0.86631 0.79548 0.79990 0.81636 1.20352 1.21532 1.20412 1.61090 1.03370 1.63185 1.03251 1.19986 0.93182 0.98337 0.84139 0.92310 1.21781 0.96708 0.98807 1.01601 1.26096 1.05364 0.98908 1.02316 1.84096 1.40896 1.26733 1.07391 1.26919 1.02375 0.96331 1.00492 1.20347 0.97229 1.01696 0.93952 1.66102 1.08367 1.16224 1.28147 1.20095 1.00423 0.99310 0.88278 1.20342 0.97108 0.93118 1.03013 0.95752 0.91134 0.95615 0.97206 0.88787 0.93060 0.85269 0.92396 0.93595 0.91368 0.90074 0.90329 0.89774 0.90984 0.91042 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 9.40 37.16 0.35 -2.43 16 2 C -0.15 -3.34 5.49 -26.73 -0.15 -3.49 16 3 C 0.22 5.16 2.14 -68.86 -0.15 5.01 16 4 H 0.04 0.93 7.21 -51.93 -0.37 0.56 16 5 C -0.49 -12.86 7.25 -34.45 -0.25 -13.11 16 6 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 7 C 0.06 1.55 5.28 -17.82 -0.09 1.46 16 8 N -0.90 -24.78 11.38 55.43 0.63 -24.15 16 9 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 13 N -0.68 -13.93 5.95 -102.17 -0.61 -14.54 16 14 C 0.16 2.78 2.71 -68.86 -0.19 2.59 16 15 H 0.06 1.08 5.44 -51.93 -0.28 0.80 16 16 C -0.13 -2.19 9.40 37.16 0.35 -1.84 16 17 C -0.21 -3.35 5.11 -35.92 -0.18 -3.53 16 18 S 0.15 2.21 23.04 -107.50 -2.48 -0.26 16 19 C 0.02 0.22 7.39 -13.46 -0.10 0.13 16 20 C -0.07 -0.67 10.46 36.01 0.38 -0.30 16 21 N -0.47 -7.42 10.53 -8.06 -0.08 -7.51 16 22 C 0.05 0.81 6.74 -84.23 -0.57 0.24 16 23 C -0.08 -1.03 10.02 36.00 0.36 -0.67 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 1.65 6.85 -51.93 -0.36 1.29 16 26 H 0.02 0.50 6.64 -51.93 -0.34 0.16 16 27 H 0.01 0.20 7.47 -51.93 -0.39 -0.19 16 28 H 0.09 2.43 6.22 -51.93 -0.32 2.10 16 29 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.33 6.73 6.21 -39.29 -0.24 6.49 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 1.23 7.54 -51.93 -0.39 0.84 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.04 6.61 -51.93 -0.34 0.69 16 LS Contribution 324.58 15.07 4.89 4.89 Total: -1.00 -28.21 324.58 -8.88 -37.09 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -5.97 Total: 4.38 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -0.24 Total: -15.95 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: -0.06 Total: -46.20 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -2.48 Total: -0.26 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.21 -8.88 -37.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040518602.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.050 kcal (2) G-P(sol) polarization free energy of solvation -28.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds