Wall clock time and date at job start Mon Mar 30 2020 06:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47238 * 2 1 4 4 H 1.09002 * 109.46866 * 185.14536 * 3 2 1 5 5 C 1.50695 * 109.47021 * 305.14467 * 3 2 1 6 6 H 1.08003 * 119.99741 * 120.00131 * 5 3 2 7 7 C 1.37871 * 120.00398 * 299.99979 * 5 3 2 8 8 N 1.31518 * 119.99825 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00551 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.46830 * 59.99964 * 9 7 5 11 11 H 1.48498 * 109.47552 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47032 * 300.00304 * 9 7 5 13 13 N 1.46905 * 109.47006 * 65.14700 * 3 2 1 14 14 C 1.46899 * 110.99676 * 85.94666 * 13 3 2 15 15 H 1.08996 * 109.47819 * 326.33754 * 14 13 3 16 16 C 1.53002 * 109.46740 * 86.34341 * 14 13 3 17 17 C 1.50706 * 109.46777 * 206.33601 * 14 13 3 18 18 S 1.76199 * 126.03926 * 314.69758 * 17 14 13 19 19 C 1.70975 * 90.28155 * 179.97438 * 18 17 14 20 20 C 1.50700 * 124.91258 * 180.02562 * 19 18 17 21 21 N 1.29027 * 110.16614 * 0.34486 * 19 18 17 22 22 C 1.31782 * 117.12716 * 359.72764 * 21 19 18 23 23 C 1.50693 * 122.75049 * 180.02562 * 22 21 19 24 24 H 1.08998 * 109.47287 * 174.60358 * 1 2 3 25 25 H 1.09004 * 109.46600 * 54.60478 * 1 2 3 26 26 H 1.08996 * 109.47209 * 294.60445 * 1 2 3 27 27 H 1.09001 * 109.47099 * 119.99968 * 2 1 3 28 28 H 1.09006 * 109.47291 * 239.99685 * 2 1 3 29 29 H 0.97004 * 120.00002 * 180.02562 * 8 7 5 30 30 H 1.00899 * 110.99535 * 321.99653 * 13 3 2 31 31 H 1.08998 * 109.47170 * 59.99640 * 16 14 13 32 32 H 1.08998 * 109.46865 * 179.97438 * 16 14 13 33 33 H 1.08995 * 109.46784 * 299.99176 * 16 14 13 34 34 H 1.08998 * 109.47360 * 270.33704 * 20 19 18 35 35 H 1.08996 * 109.47403 * 30.34079 * 20 19 18 36 36 H 1.08999 * 109.46849 * 150.34381 * 20 19 18 37 37 H 1.09001 * 109.46993 * 270.00046 * 23 22 21 38 38 H 1.09002 * 109.47260 * 29.99067 * 23 22 21 39 39 H 1.08999 * 109.47124 * 149.99981 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1262 1.4438 -0.0922 5 6 1.4364 2.1887 -1.1618 6 1 0.8272 3.0627 -0.9843 7 6 1.6618 1.7558 -2.4512 8 7 2.4032 0.6912 -2.6673 9 14 0.9141 2.6811 -3.8914 10 1 1.4098 4.0810 -3.8912 11 1 1.3033 2.0179 -5.1617 12 1 -0.5656 2.6799 -3.7660 13 7 1.6544 2.0982 1.2568 14 6 2.6433 1.8377 2.3114 15 1 3.0614 0.8398 2.1791 16 6 3.7643 2.8756 2.2269 17 6 1.9756 1.9280 3.6594 18 16 0.8605 3.1884 4.1816 19 6 0.7051 2.4309 5.7065 20 6 -0.1553 2.9351 6.8363 21 7 1.4363 1.3688 5.7521 22 6 2.1302 1.0701 4.6723 23 6 3.0241 -0.1401 4.5865 24 1 -0.3634 -1.0231 -0.0966 25 1 -0.3633 0.5953 -0.8378 26 1 -0.3633 0.4278 0.9343 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 2.5621 0.3868 -3.5745 30 1 0.7320 1.8099 1.5468 31 1 3.3462 3.8735 2.3593 32 1 4.4978 2.6826 3.0097 33 1 4.2472 2.8103 1.2520 34 1 0.4257 3.6141 7.4604 35 1 -1.0170 3.4637 6.4289 36 1 -0.4968 2.0921 7.4370 37 1 4.0278 0.1255 4.9182 38 1 2.6280 -0.9303 5.2243 39 1 3.0631 -0.4906 3.5552 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040518602.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:46 Heat of formation + Delta-G solvation = 10.255752 kcal Electronic energy + Delta-G solvation = -18816.329962 eV Core-core repulsion = 16077.397966 eV Total energy + Delta-G solvation = -2738.931997 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.97163 -38.71481 -35.68785 -33.75642 -32.80585 -30.36296 -29.97805 -28.24717 -27.73540 -25.24099 -23.78277 -22.96302 -20.96635 -19.90636 -18.68639 -18.09465 -16.82946 -16.57760 -16.23097 -15.99794 -15.13518 -14.69011 -14.51971 -14.44027 -14.18687 -14.10321 -13.95062 -13.53762 -13.25057 -13.15428 -12.96589 -12.81693 -12.77522 -12.54694 -12.44983 -12.26891 -12.15824 -11.77987 -11.65542 -11.45025 -10.97923 -10.53498 -10.40388 -10.14793 -9.49127 -9.00261 -8.03673 -6.11224 -0.22850 0.44239 0.89398 1.45636 1.45982 1.53307 1.78808 2.47187 3.18521 3.25679 3.55120 3.80908 4.09248 4.28232 4.35333 4.46145 4.52858 4.59056 4.59430 4.68465 4.71957 4.72557 4.75928 4.85211 4.98415 5.00924 5.10156 5.11248 5.29260 5.38445 5.39409 5.41808 5.67834 5.74181 5.84813 6.32637 6.65919 6.75423 6.82090 6.99081 7.55933 9.01607 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.027648 B = 0.005163 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.474124 B = 5421.440966 C = 5671.163796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.138 4.138 3 C 0.224 3.776 4 H 0.005 0.995 5 C -0.497 4.497 6 H 0.051 0.949 7 C 0.016 3.984 8 N -0.919 5.919 9 Si 0.949 3.051 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.273 1.273 13 N -0.677 5.677 14 C 0.161 3.839 15 H 0.051 0.949 16 C -0.124 4.124 17 C -0.235 4.235 18 S 0.156 5.844 19 C 0.032 3.968 20 C -0.075 4.075 21 N -0.497 5.497 22 C 0.052 3.948 23 C -0.077 4.077 24 H 0.040 0.960 25 H 0.047 0.953 26 H 0.041 0.959 27 H 0.022 0.978 28 H 0.064 0.936 29 H 0.258 0.742 30 H 0.329 0.671 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.633 2.637 16.227 16.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.178 4.178 3 C 0.116 3.884 4 H 0.023 0.977 5 C -0.536 4.536 6 H 0.070 0.930 7 C -0.182 4.182 8 N -0.560 5.560 9 Si 0.776 3.224 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.198 1.198 13 N -0.309 5.309 14 C 0.049 3.951 15 H 0.069 0.931 16 C -0.183 4.183 17 C -0.356 4.356 18 S 0.412 5.588 19 C -0.246 4.246 20 C -0.135 4.135 21 N -0.213 5.213 22 C -0.080 4.080 23 C -0.136 4.136 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.041 0.959 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.148 0.852 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.737 3.765 15.950 16.616 hybrid contribution 0.250 -1.447 -1.053 1.807 sum -2.487 2.319 14.897 15.280 Atomic orbital electron populations 1.21467 0.96265 0.99531 1.00492 1.21960 0.96225 1.00229 0.99343 1.18981 0.94025 0.89133 0.86272 0.97660 1.21198 1.30387 1.11319 0.90721 0.93026 1.25536 0.95940 0.95848 1.00870 1.69996 1.39916 1.25002 1.21050 0.85754 0.78986 0.78795 0.78908 1.20186 1.21365 1.19841 1.60965 1.04051 1.62785 1.03083 1.19862 0.92738 0.98130 0.84355 0.93136 1.21715 0.96832 0.98526 1.01189 1.25843 1.07359 1.00636 1.01773 1.84040 1.40438 1.26289 1.08042 1.27713 1.01044 0.95056 1.00790 1.20597 0.97476 1.02498 0.92886 1.66211 1.09580 1.17376 1.28171 1.20426 1.00044 0.99416 0.88140 1.20398 0.97620 0.92688 1.02892 0.94046 0.93360 0.94029 0.95888 0.91714 0.93244 0.85181 0.92520 0.91357 0.93429 0.88059 0.88305 0.88944 0.89537 0.90209 0.91141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.07 9.40 71.98 0.68 -4.39 16 2 C -0.14 -6.40 5.49 30.59 0.17 -6.23 16 3 C 0.22 10.92 2.14 44.17 0.09 11.01 16 4 H 0.01 0.30 7.21 -2.39 -0.02 0.28 16 5 C -0.50 -26.59 7.25 25.60 0.19 -26.41 16 6 H 0.05 2.81 7.81 -2.91 -0.02 2.78 16 7 C 0.02 0.88 5.28 84.65 0.45 1.33 16 8 N -0.92 -51.75 11.38 21.45 0.24 -51.50 16 9 Si 0.95 43.41 29.54 68.60 2.03 45.44 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 13 N -0.68 -27.98 5.95 -477.14 -2.84 -30.82 16 14 C 0.16 5.72 2.71 44.17 0.12 5.84 16 15 H 0.05 1.88 5.44 -2.39 -0.01 1.86 16 16 C -0.12 -4.17 9.40 71.98 0.68 -3.49 16 17 C -0.23 -7.43 5.11 24.64 0.13 -7.30 16 18 S 0.16 4.25 23.04 -56.49 -1.30 2.94 16 19 C 0.03 0.78 7.39 88.52 0.65 1.44 16 20 C -0.07 -1.14 10.46 71.24 0.75 -0.40 16 21 N -0.50 -14.60 10.53 -179.41 -1.89 -16.49 16 22 C 0.05 1.57 6.74 41.52 0.28 1.85 16 23 C -0.08 -1.96 10.02 71.23 0.71 -1.25 16 24 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.05 2.24 6.85 -2.38 -0.02 2.22 16 26 H 0.04 1.59 6.64 -2.39 -0.02 1.57 16 27 H 0.02 0.97 7.47 -2.39 -0.02 0.96 16 28 H 0.06 3.41 6.22 -2.38 -0.01 3.39 16 29 H 0.26 14.05 8.31 -92.71 -0.77 13.27 16 30 H 0.33 13.36 6.21 -89.69 -0.56 12.81 16 31 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.05 1.76 7.54 -2.39 -0.02 1.74 16 34 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.07 1.87 6.61 -2.39 -0.02 1.85 16 Total: -1.00 -60.14 324.58 1.61 -58.52 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.49 Total: 19.90 kcal Atomic # 6 Polarization: -32.88 SS G_CDS: 4.89 Total: -27.99 kcal Atomic # 7 Polarization: -94.33 SS G_CDS: -4.48 Total: -98.82 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: 4.25 SS G_CDS: -1.30 Total: 2.94 kcal Total: -60.14 1.61 -58.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040518602.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.780 kcal (2) G-P(sol) polarization free energy of solvation -60.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds