Wall clock time and date at job start Mon Mar 30 2020 06:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47035 * 2 1 4 4 H 1.08997 * 109.47012 * 305.93074 * 3 2 1 5 5 C 1.50699 * 109.47006 * 185.93175 * 3 2 1 6 6 H 1.08001 * 119.99532 * 244.48323 * 5 3 2 7 7 C 1.37867 * 120.00126 * 64.48444 * 5 3 2 8 8 N 1.31518 * 120.00119 * 192.25033 * 7 5 3 9 9 Si 1.86800 * 120.00308 * 12.24968 * 7 5 3 10 10 H 1.48506 * 109.47163 * 95.24142 * 9 7 5 11 11 H 1.48493 * 109.47577 * 215.24830 * 9 7 5 12 12 H 1.48498 * 109.46925 * 335.24806 * 9 7 5 13 13 N 1.46902 * 109.47113 * 65.93010 * 3 2 1 14 14 C 1.46901 * 111.00004 * 207.52650 * 13 3 2 15 15 H 1.08996 * 109.47307 * 326.01253 * 14 13 3 16 16 C 1.52999 * 109.46897 * 86.01655 * 14 13 3 17 17 C 1.50699 * 109.46728 * 206.01520 * 14 13 3 18 18 S 1.76200 * 126.04179 * 314.68803 * 17 14 13 19 19 C 1.70975 * 90.28443 * 179.97438 * 18 17 14 20 20 C 1.50700 * 124.91693 * 180.02562 * 19 18 17 21 21 N 1.29027 * 110.16586 * 0.34920 * 19 18 17 22 22 C 1.31779 * 117.12600 * 359.72447 * 21 19 18 23 23 C 1.50697 * 122.74974 * 179.97438 * 22 21 19 24 24 H 1.08996 * 109.46517 * 299.29533 * 1 2 3 25 25 H 1.09000 * 109.46939 * 59.29595 * 1 2 3 26 26 H 1.09006 * 109.46574 * 179.29816 * 1 2 3 27 27 H 1.09004 * 109.47256 * 240.00445 * 2 1 3 28 28 H 1.08997 * 109.47367 * 120.00050 * 2 1 3 29 29 H 0.96997 * 120.00410 * 180.02562 * 8 7 5 30 30 H 1.00900 * 111.00054 * 331.48095 * 13 3 2 31 31 H 1.09001 * 109.47582 * 63.98989 * 16 14 13 32 32 H 1.09004 * 109.46548 * 183.98563 * 16 14 13 33 33 H 1.08996 * 109.47438 * 303.98282 * 16 14 13 34 34 H 1.08998 * 109.47267 * 270.34263 * 20 19 18 35 35 H 1.09005 * 109.46853 * 30.34579 * 20 19 18 36 36 H 1.08994 * 109.46960 * 150.34358 * 20 19 18 37 37 H 1.08997 * 109.47434 * 270.00070 * 23 22 21 38 38 H 1.09006 * 109.47107 * 30.00135 * 23 22 21 39 39 H 1.09001 * 109.47086 * 149.99854 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5926 1.9860 -0.8321 5 6 3.5399 1.4450 -0.1468 6 1 4.1602 1.8196 0.6540 7 6 4.1201 0.9693 -1.3034 8 7 5.4153 0.7448 -1.3452 9 14 3.0667 0.6437 -2.8114 10 1 3.1044 1.8279 -3.7067 11 1 3.5920 -0.5414 -3.5357 12 1 1.6662 0.3858 -2.3904 13 7 1.6707 2.0925 1.2646 14 6 1.5308 3.5442 1.0891 15 1 2.2505 3.8917 0.3479 16 6 0.1128 3.8661 0.6131 17 6 1.7889 4.2361 2.4028 18 16 1.1439 3.7572 3.9710 19 6 1.9590 5.0633 4.7146 20 6 1.9154 5.3814 6.1870 21 7 2.6114 5.7412 3.8316 22 6 2.5419 5.3254 2.5831 23 6 3.2527 6.0215 1.4512 24 1 -0.3632 0.5028 0.8962 25 1 -0.3633 0.5247 -0.8836 26 1 -0.3633 -1.0277 -0.0126 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 5.8236 0.4104 -2.1590 30 1 0.8264 1.6911 1.6443 31 1 -0.6027 3.5831 1.3852 32 1 0.0299 4.9347 0.4151 33 1 -0.0990 3.3099 -0.3000 34 1 1.0809 6.0528 6.3891 35 1 1.7858 4.4596 6.7542 36 1 2.8480 5.8618 6.4827 37 1 2.5998 6.7839 1.0262 38 1 4.1621 6.4904 1.8270 39 1 3.5104 5.2938 0.6817 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040518603.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:50 Heat of formation + Delta-G solvation = 33.227692 kcal Electronic energy + Delta-G solvation = -18850.826395 eV Core-core repulsion = 16112.890537 eV Total energy + Delta-G solvation = -2737.935859 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.65191 -37.28362 -34.11005 -32.27287 -31.77063 -29.20952 -28.83818 -26.78766 -26.66274 -22.86723 -22.51201 -21.52152 -19.90606 -18.44961 -17.38438 -16.77128 -15.36530 -15.09813 -14.79677 -14.19935 -14.08254 -13.40687 -13.30146 -13.22488 -12.98006 -12.71349 -12.62041 -12.38563 -12.09658 -12.04095 -11.86993 -11.71002 -11.45339 -11.14716 -10.88394 -10.67841 -10.43480 -10.29808 -10.08481 -9.53180 -9.29559 -9.23065 -8.83627 -8.51525 -8.20500 -7.45968 -6.06425 -4.00896 1.06675 1.68591 2.13422 3.10028 3.24529 3.34325 3.36613 4.32587 4.40764 4.88380 5.16038 5.19908 5.25101 5.41538 5.42330 5.44539 5.59716 5.70210 5.76065 5.82398 5.83057 5.90279 5.97177 6.03731 6.05659 6.22794 6.25142 6.42013 6.47377 6.60758 6.65462 6.71455 6.89104 7.17611 7.73866 7.88173 8.07858 8.17437 8.72319 9.10197 9.58634 11.06910 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.023427 B = 0.005960 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.918232 B = 4696.668412 C = 5162.508266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.131 4.131 3 C 0.195 3.805 4 H 0.000 1.000 5 C -0.500 4.500 6 H 0.079 0.921 7 C 0.072 3.928 8 N -0.895 5.895 9 Si 0.857 3.143 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.251 1.251 13 N -0.667 5.667 14 C 0.159 3.841 15 H 0.108 0.892 16 C -0.176 4.176 17 C -0.171 4.171 18 S 0.122 5.878 19 C 0.020 3.980 20 C -0.071 4.071 21 N -0.469 5.469 22 C 0.049 3.951 23 C -0.078 4.078 24 H 0.045 0.955 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.262 0.738 30 H 0.320 0.680 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.460 6.906 8.527 15.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.170 4.170 3 C 0.087 3.913 4 H 0.018 0.982 5 C -0.538 4.538 6 H 0.097 0.903 7 C -0.130 4.130 8 N -0.533 5.533 9 Si 0.684 3.316 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.175 1.175 13 N -0.298 5.298 14 C 0.046 3.954 15 H 0.126 0.874 16 C -0.236 4.236 17 C -0.293 4.293 18 S 0.377 5.623 19 C -0.258 4.258 20 C -0.131 4.131 21 N -0.184 5.184 22 C -0.082 4.082 23 C -0.137 4.137 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.139 0.861 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.004 6.518 9.204 15.757 hybrid contribution -0.745 0.166 -2.068 2.204 sum -11.748 6.684 7.136 15.285 Atomic orbital electron populations 1.21927 0.98579 1.00436 1.00395 1.22171 0.92483 1.00101 1.02203 1.19560 0.96833 0.89489 0.85440 0.98243 1.20988 0.89058 1.41260 1.02520 0.90255 1.24915 0.94674 0.94960 0.98451 1.69950 1.10518 1.45095 1.27718 0.87339 0.82317 0.77983 0.83974 1.20927 1.21371 1.17542 1.60633 1.37965 1.00441 1.30717 1.19931 0.96015 0.89468 0.90021 0.87432 1.22548 0.97412 1.02077 1.01542 1.25847 1.04342 1.00241 0.98825 1.83698 1.48004 1.30022 1.00584 1.26758 1.01181 0.97085 1.00784 1.20328 1.03892 1.02487 0.86388 1.66071 1.20914 1.30755 1.00701 1.20052 1.00206 0.95859 0.92041 1.20361 0.99316 0.99904 0.94107 0.93557 0.93713 0.93678 0.91901 0.91801 0.92798 0.86133 0.92885 0.92312 0.91807 0.90271 0.90458 0.89754 0.91406 0.91054 0.89845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 9.75 37.16 0.36 -2.21 16 2 C -0.13 -2.71 4.69 -26.73 -0.13 -2.83 16 3 C 0.20 4.34 1.35 -68.86 -0.09 4.25 16 4 H 0.00 0.00 5.92 -51.93 -0.31 -0.31 16 5 C -0.50 -13.66 9.09 -34.44 -0.31 -13.98 16 6 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 7 C 0.07 2.01 5.37 -17.82 -0.10 1.92 16 8 N -0.89 -27.03 13.96 55.43 0.77 -26.26 16 9 Si 0.86 20.52 25.71 -169.99 -4.37 16.15 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.25 -5.56 5.32 56.52 0.30 -5.26 16 13 N -0.67 -13.07 5.95 -102.17 -0.61 -13.68 16 14 C 0.16 2.80 2.69 -68.87 -0.19 2.62 16 15 H 0.11 2.11 5.99 -51.93 -0.31 1.80 16 16 C -0.18 -2.58 9.13 37.16 0.34 -2.24 16 17 C -0.17 -2.93 5.47 -35.92 -0.20 -3.12 16 18 S 0.12 1.79 23.08 -107.50 -2.48 -0.69 16 19 C 0.02 0.29 7.39 -13.46 -0.10 0.19 16 20 C -0.07 -0.72 10.46 36.01 0.38 -0.34 16 21 N -0.47 -7.98 10.53 -8.06 -0.08 -8.07 16 22 C 0.05 0.86 6.74 -84.23 -0.57 0.29 16 23 C -0.08 -1.19 10.02 36.00 0.36 -0.83 16 24 H 0.05 0.69 6.51 -51.93 -0.34 0.35 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 1.38 4.69 -51.93 -0.24 1.14 16 28 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.32 5.64 6.26 -39.29 -0.25 5.39 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.95 7.50 -51.93 -0.39 0.56 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.08 1.36 6.61 -51.93 -0.34 1.02 16 LS Contribution 322.16 15.07 4.85 4.85 Total: -1.00 -30.80 322.16 -8.22 -39.02 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -6.07 Total: 4.96 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -0.24 Total: -16.28 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: 0.08 Total: -48.01 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.37 Total: 16.15 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.48 Total: -0.69 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.80 -8.22 -39.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040518603.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.249 kcal (2) G-P(sol) polarization free energy of solvation -30.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds