Wall clock time and date at job start Mon Mar 30 2020 06:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47035 * 2 1 4 4 H 1.08997 * 109.47012 * 305.93074 * 3 2 1 5 5 C 1.50699 * 109.47006 * 185.93175 * 3 2 1 6 6 H 1.08001 * 119.99532 * 244.48323 * 5 3 2 7 7 C 1.37867 * 120.00126 * 64.48444 * 5 3 2 8 8 N 1.31518 * 120.00119 * 192.25033 * 7 5 3 9 9 Si 1.86800 * 120.00308 * 12.24968 * 7 5 3 10 10 H 1.48506 * 109.47163 * 95.24142 * 9 7 5 11 11 H 1.48493 * 109.47577 * 215.24830 * 9 7 5 12 12 H 1.48498 * 109.46925 * 335.24806 * 9 7 5 13 13 N 1.46902 * 109.47113 * 65.93010 * 3 2 1 14 14 C 1.46901 * 111.00004 * 207.52650 * 13 3 2 15 15 H 1.08996 * 109.47307 * 326.01253 * 14 13 3 16 16 C 1.52999 * 109.46897 * 86.01655 * 14 13 3 17 17 C 1.50699 * 109.46728 * 206.01520 * 14 13 3 18 18 S 1.76200 * 126.04179 * 314.68803 * 17 14 13 19 19 C 1.70975 * 90.28443 * 179.97438 * 18 17 14 20 20 C 1.50700 * 124.91693 * 180.02562 * 19 18 17 21 21 N 1.29027 * 110.16586 * 0.34920 * 19 18 17 22 22 C 1.31779 * 117.12600 * 359.72447 * 21 19 18 23 23 C 1.50697 * 122.74974 * 179.97438 * 22 21 19 24 24 H 1.08996 * 109.46517 * 299.29533 * 1 2 3 25 25 H 1.09000 * 109.46939 * 59.29595 * 1 2 3 26 26 H 1.09006 * 109.46574 * 179.29816 * 1 2 3 27 27 H 1.09004 * 109.47256 * 240.00445 * 2 1 3 28 28 H 1.08997 * 109.47367 * 120.00050 * 2 1 3 29 29 H 0.96997 * 120.00410 * 180.02562 * 8 7 5 30 30 H 1.00900 * 111.00054 * 331.48095 * 13 3 2 31 31 H 1.09001 * 109.47582 * 63.98989 * 16 14 13 32 32 H 1.09004 * 109.46548 * 183.98563 * 16 14 13 33 33 H 1.08996 * 109.47438 * 303.98282 * 16 14 13 34 34 H 1.08998 * 109.47267 * 270.34263 * 20 19 18 35 35 H 1.09005 * 109.46853 * 30.34579 * 20 19 18 36 36 H 1.08994 * 109.46960 * 150.34358 * 20 19 18 37 37 H 1.08997 * 109.47434 * 270.00070 * 23 22 21 38 38 H 1.09006 * 109.47107 * 30.00135 * 23 22 21 39 39 H 1.09001 * 109.47086 * 149.99854 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5926 1.9860 -0.8321 5 6 3.5399 1.4450 -0.1468 6 1 4.1602 1.8196 0.6540 7 6 4.1201 0.9693 -1.3034 8 7 5.4153 0.7448 -1.3452 9 14 3.0667 0.6437 -2.8114 10 1 3.1044 1.8279 -3.7067 11 1 3.5920 -0.5414 -3.5357 12 1 1.6662 0.3858 -2.3904 13 7 1.6707 2.0925 1.2646 14 6 1.5308 3.5442 1.0891 15 1 2.2505 3.8917 0.3479 16 6 0.1128 3.8661 0.6131 17 6 1.7889 4.2361 2.4028 18 16 1.1439 3.7572 3.9710 19 6 1.9590 5.0633 4.7146 20 6 1.9154 5.3814 6.1870 21 7 2.6114 5.7412 3.8316 22 6 2.5419 5.3254 2.5831 23 6 3.2527 6.0215 1.4512 24 1 -0.3632 0.5028 0.8962 25 1 -0.3633 0.5247 -0.8836 26 1 -0.3633 -1.0277 -0.0126 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 5.8236 0.4104 -2.1590 30 1 0.8264 1.6911 1.6443 31 1 -0.6027 3.5831 1.3852 32 1 0.0299 4.9347 0.4151 33 1 -0.0990 3.3099 -0.3000 34 1 1.0809 6.0528 6.3891 35 1 1.7858 4.4596 6.7542 36 1 2.8480 5.8618 6.4827 37 1 2.5998 6.7839 1.0262 38 1 4.1621 6.4904 1.8270 39 1 3.5104 5.2938 0.6817 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040518603.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:49 Heat of formation + Delta-G solvation = 12.127745 kcal Electronic energy + Delta-G solvation = -18851.741358 eV Core-core repulsion = 16112.890537 eV Total energy + Delta-G solvation = -2738.850821 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.89318 -38.83990 -35.61246 -34.10635 -33.15403 -30.52109 -30.05560 -28.48715 -28.00007 -24.50404 -23.72285 -22.85612 -21.63589 -19.74629 -18.82152 -18.63445 -16.79428 -16.70738 -16.05574 -15.90754 -15.51562 -14.86505 -14.62658 -14.48901 -14.23420 -14.10714 -13.84773 -13.66652 -13.53197 -13.36886 -13.16598 -12.82711 -12.76334 -12.62873 -12.51665 -12.25281 -12.11071 -11.80678 -11.72552 -11.25700 -11.14959 -10.66438 -10.52343 -10.06088 -9.43586 -9.04372 -8.24644 -6.23622 -0.14409 0.50985 0.90601 1.34129 1.37929 1.47033 1.84671 2.37029 3.08488 3.22697 3.45842 3.92097 4.12642 4.14531 4.35715 4.36693 4.41104 4.44689 4.50441 4.59653 4.68512 4.72520 4.76114 4.81018 4.85728 4.98702 5.05032 5.09354 5.11995 5.18336 5.20248 5.31131 5.42540 5.51181 5.80157 6.07925 6.49568 6.82464 6.86366 6.92760 7.40316 8.93069 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.023427 B = 0.005960 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.918232 B = 4696.668412 C = 5162.508266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.203 3.797 4 H 0.005 0.995 5 C -0.499 4.499 6 H 0.023 0.977 7 C 0.012 3.988 8 N -0.950 5.950 9 Si 0.925 3.075 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.217 1.217 13 N -0.678 5.678 14 C 0.161 3.839 15 H 0.077 0.923 16 C -0.167 4.167 17 C -0.202 4.202 18 S 0.154 5.846 19 C 0.023 3.977 20 C -0.072 4.072 21 N -0.499 5.499 22 C 0.034 3.966 23 C -0.075 4.075 24 H 0.063 0.937 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.262 0.738 30 H 0.335 0.665 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.796 6.931 9.134 18.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C 0.094 3.906 4 H 0.022 0.978 5 C -0.538 4.538 6 H 0.042 0.958 7 C -0.185 4.185 8 N -0.591 5.591 9 Si 0.749 3.251 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.139 1.139 13 N -0.310 5.310 14 C 0.048 3.952 15 H 0.095 0.905 16 C -0.226 4.226 17 C -0.324 4.324 18 S 0.410 5.590 19 C -0.254 4.254 20 C -0.132 4.132 21 N -0.215 5.215 22 C -0.097 4.097 23 C -0.134 4.134 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.155 0.845 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.089 0.911 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.380 6.549 9.834 18.612 hybrid contribution 0.383 0.215 -2.060 2.106 sum -13.997 6.764 7.774 17.382 Atomic orbital electron populations 1.21842 0.94661 1.02331 1.01645 1.22051 0.95928 0.97973 1.01055 1.19326 0.93273 0.91188 0.86840 0.97796 1.21218 0.91738 1.39980 1.00847 0.95846 1.25785 0.95851 0.94926 1.01910 1.70121 1.12962 1.47289 1.28719 0.86240 0.82123 0.77545 0.79188 1.20737 1.21621 1.13919 1.60410 1.39230 1.01759 1.29635 1.19828 0.97303 0.88023 0.90020 0.90465 1.22438 0.95298 1.02979 1.01857 1.25841 1.05797 1.00819 0.99954 1.83442 1.47345 1.29582 0.98659 1.27616 0.99355 0.96085 1.02368 1.20570 1.05063 1.04176 0.83432 1.66139 1.22498 1.32023 1.00826 1.20327 1.00281 0.96325 0.92730 1.20334 0.99775 0.99813 0.93468 0.91797 0.93010 0.91501 0.93324 0.92884 0.92867 0.84506 0.91247 0.91062 0.91741 0.87876 0.88327 0.89423 0.89239 0.91061 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.27 9.75 71.98 0.70 -3.57 16 2 C -0.13 -5.19 4.69 30.60 0.14 -5.05 16 3 C 0.20 8.94 1.35 44.17 0.06 9.00 16 4 H 0.00 0.20 5.92 -2.39 -0.01 0.18 16 5 C -0.50 -28.37 9.09 25.60 0.23 -28.14 16 6 H 0.02 1.55 8.06 -2.91 -0.02 1.52 16 7 C 0.01 0.69 5.37 84.65 0.45 1.14 16 8 N -0.95 -60.03 13.96 21.44 0.30 -59.73 16 9 Si 0.93 42.64 25.71 68.60 1.76 44.40 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 12 H -0.22 -8.72 5.32 99.48 0.53 -8.19 16 13 N -0.68 -26.26 5.95 -477.16 -2.84 -29.10 16 14 C 0.16 5.64 2.69 44.17 0.12 5.76 16 15 H 0.08 3.15 5.99 -2.39 -0.01 3.14 16 16 C -0.17 -4.50 9.13 71.98 0.66 -3.84 16 17 C -0.20 -6.87 5.47 24.64 0.13 -6.74 16 18 S 0.15 4.25 23.08 -56.49 -1.30 2.95 16 19 C 0.02 0.65 7.39 88.52 0.65 1.30 16 20 C -0.07 -1.26 10.46 71.24 0.75 -0.52 16 21 N -0.50 -16.69 10.53 -179.41 -1.89 -18.58 16 22 C 0.03 1.20 6.74 41.52 0.28 1.48 16 23 C -0.07 -2.37 10.02 71.23 0.71 -1.66 16 24 H 0.06 1.62 6.51 -2.39 -0.02 1.61 16 25 H 0.05 1.44 8.14 -2.39 -0.02 1.43 16 26 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 27 H 0.05 2.04 4.69 -2.39 -0.01 2.02 16 28 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 30 H 0.33 11.10 6.26 -89.69 -0.56 10.54 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.06 1.73 7.50 -2.39 -0.02 1.71 16 34 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.09 2.36 8.14 -2.39 -0.02 2.35 16 38 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 39 H 0.06 2.25 6.61 -2.39 -0.02 2.23 16 Total: -1.00 -70.13 322.16 1.23 -68.90 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 0.30 Total: 21.97 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: 4.90 Total: -30.82 kcal Atomic # 7 Polarization: -102.97 SS G_CDS: -4.43 Total: -107.40 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 1.76 Total: 44.40 kcal Atomic # 16 Polarization: 4.25 SS G_CDS: -1.30 Total: 2.95 kcal Total: -70.13 1.23 -68.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040518603.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.026 kcal (2) G-P(sol) polarization free energy of solvation -70.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds